[Seqinr-commits] r1901 - www/src/appendix

[noreply at r-forge.r-project.org]

Author: jeanlobry
Date: 2016-06-02 16:11:38 +0200 (Thu, 02 Jun 2016)
New Revision: 1901

Modified:
   www/src/appendix/releasenotes.rnw
   www/src/appendix/releasenotes.tex
Log:
using gzcon in read.fasta

Modified: www/src/appendix/releasenotes.rnw
===================================================================
--- www/src/appendix/releasenotes.rnw	2016-06-02 14:01:59 UTC (rev 1900)
+++ www/src/appendix/releasenotes.rnw	2016-06-02 14:11:38 UTC (rev 1901)
@@ -33,6 +33,15 @@
 fixed and the \texttt{dontrun} directive has been removed to
 detect automatically any further problem.
 
+\item As pointed out by e-mail on 25-MAY-2016 by Haruo Suzuki the
+\texttt{read.fasta()} function can import sequences directly from
+\textit{local} gzipped files. A new \texttt{smallAA.fasta.gz} file
+has been added to document this in the examples of the
+\texttt{read.fasta()} function. This is however no more true if
+you try to read directly the sequences from a compressed file
+accessed via its URL. A workaround now given in the manual
+is to use a construct like \texttt{read.fasta(gzcon(url(myurl)))}.
+
 \end{itemize}
 
 \section*{3.0 series}

Modified: www/src/appendix/releasenotes.tex
===================================================================
--- www/src/appendix/releasenotes.tex	2016-06-02 14:01:59 UTC (rev 1900)
+++ www/src/appendix/releasenotes.tex	2016-06-02 14:11:38 UTC (rev 1901)
@@ -69,6 +69,15 @@
 fixed and the \texttt{dontrun} directive has been removed to
 detect automatically any further problem.
 
+\item As pointed out by e-mail on 25-MAY-2016 by Haruo Suzuki the
+\texttt{read.fasta()} function can import sequences directly from
+\textit{local} gzipped files. A new \texttt{smallAA.fasta.gz} file
+has been added to document this in the examples of the
+\texttt{read.fasta()} function. This is however no more true if
+you try to read directly the sequences from a compressed file
+accessed via its URL. A workaround now given in the manual
+is to use a construct like \texttt{read.fasta(gzcon(url(myurl)))}.
+
 \end{itemize}
 
 \section*{3.0 series}
@@ -1094,7 +1103,7 @@
 There were two compilation steps:
 
 \begin{itemize}
-  \item \Rlogo{} compilation time was: Thu Jun  2 12:44:22 2016
+  \item \Rlogo{} compilation time was: Thu Jun  2 16:09:38 2016
   \item \LaTeX{} compilation time was: \today
 \end{itemize}