[Seqinr-commits] r1618 - pkg/inst/doc/src/appendix

Wed Jun 24 11:07:30 CEST 2009

Author: lobry
Date: 2009-06-24 11:07:29 +0200 (Wed, 24 Jun 2009)
New Revision: 1618

Modified:
pkg/inst/doc/src/appendix/releasenotes.rnw
Log:

Modified: pkg/inst/doc/src/appendix/releasenotes.rnw
===================================================================
--- pkg/inst/doc/src/appendix/releasenotes.rnw	2009-06-24 09:06:59 UTC (rev 1617)
+++ pkg/inst/doc/src/appendix/releasenotes.rnw	2009-06-24 09:07:29 UTC (rev 1618)
@@ -20,12 +20,27 @@

\begin{itemize}

+\item Configuration files to be imported by the \texttt{readBins()}
+function may have trailling tabulations, as for instance in the
+test file \texttt{Prototype\_PowerPlex\_EP01\_Bins.txt} for allele
+9 at locus \texttt{D3S1358} and for allele 14 at locus \texttt{D12S391}.
+This was a source of trouble during importation. This is now fixed
+and the above mentioned file is used as a quality control. A warning
+is now issued if the number of columns in the data.frame corresponding
+to a locus is not 4 as expected.
+
\item Configuration files to be imported by the \texttt{readPanels()}
function may have more than one tabulation separator between
two data items in a way that could be different from one
-line to another one. This was a source of trouble during importation.
+line to another one. There is an example of such a case in the
+test file \texttt{Prototype\_PowerPlex\_EP01\_Pa.txt} where
+locus \texttt{D10S1248} and \texttt{D22S1045} are followed by a
+single tabulation when all remaining loci are followed by two
+tabulations.
+This was a source of trouble during importation.
This is now fixed by preprocessing the input so that
all consecutive tabulations are replaced by a single one.
+The above mentioned test file is now used as a quality control.

\end{itemize}