[Seqinr-commits] r1534 - pkg/man

[noreply at r-forge.r-project.org]

Author: lobry
Date: 2009-01-23 01:16:24 +0100 (Fri, 23 Jan 2009)
New Revision: 1534

Added:
   pkg/man/identifiler.Rd
Log:
new dataset identifiler

Added: pkg/man/identifiler.Rd
===================================================================
--- pkg/man/identifiler.Rd	                        (rev 0)
+++ pkg/man/identifiler.Rd	2009-01-23 00:16:24 UTC (rev 1534)
@@ -0,0 +1,27 @@
+\name{identifiler}
+\alias{identifiler}
+\docType{data}
+\title{Identifiler allele names}
+\description{
+Names of the alleles in the Applied Biosystem identifiler allelic ladder.
+}
+\usage{data(identifiler)}
+\format{
+  A list with 4 components for the four fluorochromes.
+  \describe{
+    \item{FAM}{a list of 4 loci}
+    \item{VIC}{a list of 5 loci}
+    \item{NED}{a list of 4 loci}
+    \item{PET}{a list of 3 loci}
+  }
+}
+
+\examples{
+data(identifiler)
+op <- par(no.readonly = TRUE)
+par(mar = c(3,8,4,2)+0.1)
+allcount <- unlist(lapply(identifiler, function(x) lapply(x, length)))
+barplot(allcount[order(allcount)], horiz = TRUE, las = 1,
+main = "Allele count per locus", col = "lightblue")
+par(op)
+}