[Rprotobuf-commits] r945 - in papers/jss: . JSSemails
noreply at r-forge.r-project.org
noreply at r-forge.r-project.org
Mon Apr 13 21:51:21 CEST 2015
Author: edd
Date: 2015-04-13 21:51:21 +0200 (Mon, 13 Apr 2015)
New Revision: 945
Added:
papers/jss/JSSemails/
papers/jss/JSSemails/conditional-acceptance-email-2015-04.txt
papers/jss/JSSemails/conditional-acceptance-notes-2015-04.txt
Removed:
papers/jss/conditional-acceptance-email-2015-04.txt
papers/jss/conditional-acceptance-notes-2015-04.txt
Modified:
papers/jss/Makefile
papers/jss/jss1313.R
Log:
some file cleanups
Copied: papers/jss/JSSemails/conditional-acceptance-email-2015-04.txt (from rev 943, papers/jss/conditional-acceptance-email-2015-04.txt)
===================================================================
--- papers/jss/JSSemails/conditional-acceptance-email-2015-04.txt (rev 0)
+++ papers/jss/JSSemails/conditional-acceptance-email-2015-04.txt 2015-04-13 19:51:21 UTC (rev 945)
@@ -0,0 +1,61 @@
+From: Editor of the Journal of Statistical Software <editor at jstatsoft.org>
+To: "edd at debian.org" <edd at debian.org>
+Subject: JSS 1313 Conditional Acceptance
+Date: Mon, 6 Apr 2015 19:30:32 +0000
+
+Dear author,
+
+Your submission
+
+ JSS 1313
+
+is conditionally accepted for publication in JSS.
+
+Your manuscript has just finished the post-processing stage. In order to
+continue in the process there are a few changes that need to be made. Attached
+to this email is a comments file where you can find all the necessary changes.
+
+For further questions please see FAQ at http://www.jstatsoft.org/style.
+
+
+Please send the full sources for your submission to the technical editor (
+editor at jstatsoft.org). It should contain:
+
+
+ 1. The full sources of the latest version of the software. (Binary versions
+ can be provided in addition.)
+ 2. The .tex, .bib, and all graphics for the manuscript: where the names of
+ your files should be - your .tex file should be called jssxxx.tex and your
+ .bib file should be called jssxxx.bib. As well as a complied .pdf version
+ of your manuscript.
+ 3. Information on how to replicate the examples in the manuscript. (Typically,
+ this is a self-contained standalone script file that loads/calls/sources
+ the software package from (1). If data or other external files are needed,
+ that are not yet provided with the software package, include these as
+ well.) Please use subdirectories for Figures/ and Code/
+ 4. Please wrap all these files into a single .zip (or .tar.gz) file.
+ 5. Please make sure the .zip files only contains the necessary files. That is,
+ please do not include .aux, .log, etc. files and any unused files such
+ as jss.cls, jss.bst, jsslogo.jpg, etc.
+
+
+Note for R authors: If you have prepared your manuscript using Sweave, the
+files in (2) can be produced by Sweave, those in (3) by Stangle (possibly
+enhancing the comments). Also indicate in your e-mail that Sweave was used and
+the technical editor will provide you with further Sweave-specific information.
+
+Thanks for choosing JSS and contributing to free statistical software.
+
+Best regards,
+
+Jan de Leeuw
+Bettina Grün
+Achim Zeileis
+
+
+
+
+
+
+----------------------------------------------------------------------
+xplain text (us-ascii): JSS 1313 post comments.txt, JSS 1313 [display]
Copied: papers/jss/JSSemails/conditional-acceptance-notes-2015-04.txt (from rev 943, papers/jss/conditional-acceptance-notes-2015-04.txt)
===================================================================
--- papers/jss/JSSemails/conditional-acceptance-notes-2015-04.txt (rev 0)
+++ papers/jss/JSSemails/conditional-acceptance-notes-2015-04.txt 2015-04-13 19:51:21 UTC (rev 945)
@@ -0,0 +1,85 @@
+JSS 1313: Eddelbuettel, Stokely, Ooms
+
+RProtoBuf: Efficient Cross-Language Data Serialization in R
+
+---------------------------------------------------------
+For further instruction on JSS style requirements please see the JSS style manual (in particular section 2.1 Style Checklist) at http://www.jstatsoft.org/downloads/JSSstyle.zip
+
+ ## START DEdd: Inserted per copy/paste from jss.pdf:
+
+ 2.1 Style checklist
+
+ A quick check for the most important aspects of the JSS style is given
+ below. Authors should make sure that all of them are addressed in the final
+ version. More details can be found in the remainder of this manual.
+ • The manuscript can be compiled by pdfLATEX.
+ • \proglang, \pkg and \code have been used for highlighting throughout the paper
+ (including titles and references), except where explicitly escaped.
+ • References are provided in a .bib BibTEX database and included in the text by \cite,
+ \citep, \citet, etc.
+ • Titles and headers are formatted properly:
+ – \title in title style,
+ – \section etc. in sentence style,
+ – all titles in the BibTEX file in title style.
+ • Figures, tables and equations are marked with a \label and referred to by \ref, e.g.,
+ “Figure~\ref{...}”.
+ • Software packages are \cite{}d properly.
+
+ ## END DEdd: Inserted per copy/paste from jss.pdf:
+
+Also see FAQ at: http://www.jstatsoft.org/style
+
+For further references please see RECENT JSS papers for detailed documentation and examples.
+---------------------------------------------------------
+
+
+From the editorial team:
+
+o From one reviewer: As far as I can see there's only one difference between
+the two columns of Table 3. It would be nice to highlight this.
+
+ ## DEdd: Done, added a sentence below table and tightened wording in that
+ Table note.
+
+
+Manuscript style comments:
+
+o Code should have enough spaces to facilitate reading. Please include spaces before and after operators and after commas (unless spaces have syntactical meaning).
+
+ ## DEdd: No change, we were good already
+
+o The table in Figure 2 should have row/column labels in sentence
+style. (Only the first word of a label should be capitalized).
+
+ ## DEdd: Done (not sure I like it better)
+
+o In all cases, code input/output must fit within the normal text width of the manuscript. Thus, code input should have appropriate line breaks and code output should preferably be generated with a suitable width (or otherwise edited). E.g., see p. 9.
+
+ ## DEdd: Replaces the Sweave code with its latex output and manually broke the long line
+
+o For bullet lists/itemized lists please use either a comma, semi-colon, or period at the end of each item.
+
+ ## DEdd: Done; one small change
+
+o As a reminder, please make sure that:
+ - \proglang, \pkg and \code have been used for highlighting throughout the paper (including titles and references), except where explicitly escaped.
+
+
+References:
+
+o John Wiley & Sons (not: Wiley, John Wiley & Sons Inc.)
+
+ ## DEdd We only had one 'Wiley' where I removed a stray ".com"
+
+o As a reminder,
+ - Please make sure that all software packages are \cite{}'d properly.
+
+ - All references should be in title style.
+
+ - See FAQ for specific reference instructions.
+
+ ## DEdd Update bibliography to current version numbers, and title styled
+
+Code:
+
+o As a reminder, please make sure that the files needed to replicate all code/examples within the manuscript are included in a standalone replication script.
Modified: papers/jss/Makefile
===================================================================
--- papers/jss/Makefile 2015-04-13 19:33:59 UTC (rev 944)
+++ papers/jss/Makefile 2015-04-13 19:51:21 UTC (rev 945)
@@ -3,7 +3,7 @@
clean:
rm -fr ${article}.out ${article}.aux ${article}.log ${article}.bbl \
- ${article}.blg ${article}.brf figures/fig-0??.pdf
+ ${article}.blg ${article}.brf figures/fig-???.pdf
${article}.pdf: ${article}.Rnw
R CMD Sweave ${article}.Rnw
Deleted: papers/jss/conditional-acceptance-email-2015-04.txt
===================================================================
--- papers/jss/conditional-acceptance-email-2015-04.txt 2015-04-13 19:33:59 UTC (rev 944)
+++ papers/jss/conditional-acceptance-email-2015-04.txt 2015-04-13 19:51:21 UTC (rev 945)
@@ -1,61 +0,0 @@
-From: Editor of the Journal of Statistical Software <editor at jstatsoft.org>
-To: "edd at debian.org" <edd at debian.org>
-Subject: JSS 1313 Conditional Acceptance
-Date: Mon, 6 Apr 2015 19:30:32 +0000
-
-Dear author,
-
-Your submission
-
- JSS 1313
-
-is conditionally accepted for publication in JSS.
-
-Your manuscript has just finished the post-processing stage. In order to
-continue in the process there are a few changes that need to be made. Attached
-to this email is a comments file where you can find all the necessary changes.
-
-For further questions please see FAQ at http://www.jstatsoft.org/style.
-
-
-Please send the full sources for your submission to the technical editor (
-editor at jstatsoft.org). It should contain:
-
-
- 1. The full sources of the latest version of the software. (Binary versions
- can be provided in addition.)
- 2. The .tex, .bib, and all graphics for the manuscript: where the names of
- your files should be - your .tex file should be called jssxxx.tex and your
- .bib file should be called jssxxx.bib. As well as a complied .pdf version
- of your manuscript.
- 3. Information on how to replicate the examples in the manuscript. (Typically,
- this is a self-contained standalone script file that loads/calls/sources
- the software package from (1). If data or other external files are needed,
- that are not yet provided with the software package, include these as
- well.) Please use subdirectories for Figures/ and Code/
- 4. Please wrap all these files into a single .zip (or .tar.gz) file.
- 5. Please make sure the .zip files only contains the necessary files. That is,
- please do not include .aux, .log, etc. files and any unused files such
- as jss.cls, jss.bst, jsslogo.jpg, etc.
-
-
-Note for R authors: If you have prepared your manuscript using Sweave, the
-files in (2) can be produced by Sweave, those in (3) by Stangle (possibly
-enhancing the comments). Also indicate in your e-mail that Sweave was used and
-the technical editor will provide you with further Sweave-specific information.
-
-Thanks for choosing JSS and contributing to free statistical software.
-
-Best regards,
-
-Jan de Leeuw
-Bettina Grün
-Achim Zeileis
-
-
-
-
-
-
-----------------------------------------------------------------------
-xplain text (us-ascii): JSS 1313 post comments.txt, JSS 1313 [display]
Deleted: papers/jss/conditional-acceptance-notes-2015-04.txt
===================================================================
--- papers/jss/conditional-acceptance-notes-2015-04.txt 2015-04-13 19:33:59 UTC (rev 944)
+++ papers/jss/conditional-acceptance-notes-2015-04.txt 2015-04-13 19:51:21 UTC (rev 945)
@@ -1,85 +0,0 @@
-JSS 1313: Eddelbuettel, Stokely, Ooms
-
-RProtoBuf: Efficient Cross-Language Data Serialization in R
-
----------------------------------------------------------
-For further instruction on JSS style requirements please see the JSS style manual (in particular section 2.1 Style Checklist) at http://www.jstatsoft.org/downloads/JSSstyle.zip
-
- ## START DEdd: Inserted per copy/paste from jss.pdf:
-
- 2.1 Style checklist
-
- A quick check for the most important aspects of the JSS style is given
- below. Authors should make sure that all of them are addressed in the final
- version. More details can be found in the remainder of this manual.
- • The manuscript can be compiled by pdfLATEX.
- • \proglang, \pkg and \code have been used for highlighting throughout the paper
- (including titles and references), except where explicitly escaped.
- • References are provided in a .bib BibTEX database and included in the text by \cite,
- \citep, \citet, etc.
- • Titles and headers are formatted properly:
- – \title in title style,
- – \section etc. in sentence style,
- – all titles in the BibTEX file in title style.
- • Figures, tables and equations are marked with a \label and referred to by \ref, e.g.,
- “Figure~\ref{...}”.
- • Software packages are \cite{}d properly.
-
- ## END DEdd: Inserted per copy/paste from jss.pdf:
-
-Also see FAQ at: http://www.jstatsoft.org/style
-
-For further references please see RECENT JSS papers for detailed documentation and examples.
----------------------------------------------------------
-
-
-From the editorial team:
-
-o From one reviewer: As far as I can see there's only one difference between
-the two columns of Table 3. It would be nice to highlight this.
-
- ## DEdd: Done, added a sentence below table and tightened wording in that
- Table note.
-
-
-Manuscript style comments:
-
-o Code should have enough spaces to facilitate reading. Please include spaces before and after operators and after commas (unless spaces have syntactical meaning).
-
- ## DEdd: No change, we were good already
-
-o The table in Figure 2 should have row/column labels in sentence
-style. (Only the first word of a label should be capitalized).
-
- ## DEdd: Done (not sure I like it better)
-
-o In all cases, code input/output must fit within the normal text width of the manuscript. Thus, code input should have appropriate line breaks and code output should preferably be generated with a suitable width (or otherwise edited). E.g., see p. 9.
-
- ## DEdd: Replaces the Sweave code with its latex output and manually broke the long line
-
-o For bullet lists/itemized lists please use either a comma, semi-colon, or period at the end of each item.
-
- ## DEdd: Done; one small change
-
-o As a reminder, please make sure that:
- - \proglang, \pkg and \code have been used for highlighting throughout the paper (including titles and references), except where explicitly escaped.
-
-
-References:
-
-o John Wiley & Sons (not: Wiley, John Wiley & Sons Inc.)
-
- ## DEdd We only had one 'Wiley' where I removed a stray ".com"
-
-o As a reminder,
- - Please make sure that all software packages are \cite{}'d properly.
-
- - All references should be in title style.
-
- - See FAQ for specific reference instructions.
-
- ## DEdd Update bibliography to current version numbers, and title styled
-
-Code:
-
-o As a reminder, please make sure that the files needed to replicate all code/examples within the manuscript are included in a standalone replication script.
Modified: papers/jss/jss1313.R
===================================================================
--- papers/jss/jss1313.R 2015-04-13 19:33:59 UTC (rev 944)
+++ papers/jss/jss1313.R 2015-04-13 19:51:21 UTC (rev 945)
@@ -1,7 +1,7 @@
-### R code from vignette source '/home/edd/svn/rprotobuf/papers/jss/article.Rnw'
+### R code from vignette source '/home/edd/svn/rprotobuf/papers/jss/jss1313.Rnw'
###################################################
-### code chunk number 1: article.Rnw:130-136
+### code chunk number 1: jss1313.Rnw:130-136
###################################################
## cf http://www.jstatsoft.org/style#q12
options(prompt = "R> ",
@@ -12,7 +12,7 @@
###################################################
-### code chunk number 2: article.Rnw:318-326
+### code chunk number 2: jss1313.Rnw:318-326
###################################################
library("RProtoBuf")
p <- new(tutorial.Person, id=1,
@@ -25,13 +25,13 @@
###################################################
-### code chunk number 3: article.Rnw:421-422
+### code chunk number 3: jss1313.Rnw:421-422
###################################################
p <- new(tutorial.Person, name = "Murray", id = 1)
###################################################
-### code chunk number 4: article.Rnw:431-434
+### code chunk number 4: jss1313.Rnw:431-434
###################################################
p$name
p$id
@@ -39,7 +39,7 @@
###################################################
-### code chunk number 5: article.Rnw:442-445
+### code chunk number 5: jss1313.Rnw:442-445
###################################################
p[["name"]] <- "Murray Stokely"
p[[ 2 ]] <- 3
@@ -47,25 +47,25 @@
###################################################
-### code chunk number 6: article.Rnw:461-462
+### code chunk number 6: jss1313.Rnw:461-462
###################################################
p
###################################################
-### code chunk number 7: article.Rnw:469-470
+### code chunk number 7: jss1313.Rnw:469-470
###################################################
writeLines(as.character(p))
###################################################
-### code chunk number 8: article.Rnw:483-484
+### code chunk number 8: jss1313.Rnw:483-484
###################################################
serialize(p, NULL)
###################################################
-### code chunk number 9: article.Rnw:489-492
+### code chunk number 9: jss1313.Rnw:489-492
###################################################
tf1 <- tempfile()
serialize(p, tf1)
@@ -73,20 +73,20 @@
###################################################
-### code chunk number 10: article.Rnw:538-540
+### code chunk number 10: jss1313.Rnw:538-540
###################################################
msg <- read(tutorial.Person, tf1)
writeLines(as.character(msg))
###################################################
-### code chunk number 11: article.Rnw:660-661
+### code chunk number 11: jss1313.Rnw:660-661
###################################################
new(tutorial.Person)
###################################################
-### code chunk number 12: article.Rnw:685-690
+### code chunk number 12: jss1313.Rnw:685-690
###################################################
tutorial.Person$email
tutorial.Person$email$is_required()
@@ -96,7 +96,7 @@
###################################################
-### code chunk number 13: article.Rnw:702-709
+### code chunk number 13: jss1313.Rnw:702-709
###################################################
tutorial.Person$PhoneType
tutorial.Person$PhoneType$WORK
@@ -108,7 +108,7 @@
###################################################
-### code chunk number 14: article.Rnw:805-808
+### code chunk number 14: jss1313.Rnw:805-808
###################################################
if (!exists("JSSPaper.Example1", "RProtoBuf:DescriptorPool")) {
readProtoFiles(file="int64.proto")
@@ -116,7 +116,7 @@
###################################################
-### code chunk number 15: article.Rnw:830-834
+### code chunk number 15: jss1313.Rnw:830-834
###################################################
as.integer(2^31-1)
as.integer(2^31 - 1) + as.integer(1)
@@ -125,20 +125,20 @@
###################################################
-### code chunk number 16: article.Rnw:846-847
+### code chunk number 16: jss1313.Rnw:846-847
###################################################
2^53 == (2^53 + 1)
###################################################
-### code chunk number 17: article.Rnw:898-900
+### code chunk number 17: jss1313.Rnw:898-900
###################################################
msg <- serialize_pb(iris, NULL)
identical(iris, unserialize_pb(msg))
###################################################
-### code chunk number 18: article.Rnw:928-931
+### code chunk number 18: jss1313.Rnw:928-931
###################################################
datasets <- as.data.frame(data(package="datasets")$results)
datasets$name <- sub("\\s+.*$", "", datasets$Item)
@@ -146,7 +146,7 @@
###################################################
-### code chunk number 19: article.Rnw:949-992
+### code chunk number 19: jss1313.Rnw:949-992
###################################################
datasets$object.size <- unname(sapply(datasets$name, function(x) object.size(eval(as.name(x)))))
@@ -246,7 +246,7 @@
###################################################
-### code chunk number 21: article.Rnw:1231-1235
+### code chunk number 21: jss1313.Rnw:1231-1235
###################################################
require(HistogramTools)
readProtoFiles(package="HistogramTools")
@@ -255,7 +255,7 @@
###################################################
-### code chunk number 22: article.Rnw:1323-1330 (eval = FALSE)
+### code chunk number 22: jss1313.Rnw:1323-1330 (eval = FALSE)
###################################################
## library("RProtoBuf")
## library("httr")
@@ -267,7 +267,7 @@
###################################################
-### code chunk number 23: article.Rnw:1380-1396 (eval = FALSE)
+### code chunk number 23: jss1313.Rnw:1380-1396 (eval = FALSE)
###################################################
## library("httr")
## library("RProtoBuf")
@@ -288,7 +288,7 @@
###################################################
-### code chunk number 24: article.Rnw:1400-1403 (eval = FALSE)
+### code chunk number 24: jss1313.Rnw:1400-1403 (eval = FALSE)
###################################################
## fnargs <- unserialize_pb(inputmsg)
## val <- do.call(stats::rnorm, fnargs)
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