From noreply at r-forge.r-project.org Thu Dec 4 19:04:01 2014 From: noreply at r-forge.r-project.org (noreply at r-forge.r-project.org) Date: Thu, 4 Dec 2014 19:04:01 +0100 (CET) Subject: [Robast-commits] r796 - in branches/robast-1.0/pkg: ROptEst ROptEstOld ROptRegTS RandVar RobAStRDA RobExtremes RobLox RobLoxBioC RobRex Message-ID: <20141204180401.4BDED1856FF@r-forge.r-project.org> Author: ruckdeschel Date: 2014-12-04 19:04:00 +0100 (Thu, 04 Dec 2014) New Revision: 796 Modified: branches/robast-1.0/pkg/ROptEst/DESCRIPTION branches/robast-1.0/pkg/ROptEstOld/DESCRIPTION branches/robast-1.0/pkg/ROptRegTS/DESCRIPTION branches/robast-1.0/pkg/RandVar/DESCRIPTION branches/robast-1.0/pkg/RobAStRDA/DESCRIPTION branches/robast-1.0/pkg/RobExtremes/DESCRIPTION branches/robast-1.0/pkg/RobLox/DESCRIPTION branches/robast-1.0/pkg/RobLoxBioC/DESCRIPTION branches/robast-1.0/pkg/RobRex/DESCRIPTION Log: fixed DESCRIPTION files according to CRAN style Modified: branches/robast-1.0/pkg/ROptEst/DESCRIPTION =================================================================== --- branches/robast-1.0/pkg/ROptEst/DESCRIPTION 2014-11-25 09:11:41 UTC (rev 795) +++ branches/robast-1.0/pkg/ROptEst/DESCRIPTION 2014-12-04 18:04:00 UTC (rev 796) @@ -8,8 +8,8 @@ RandVar(>= 0.9.2), RobAStBase(>= 0.9) Imports: startupmsg Suggests: RobLox, MASS -Author: Matthias Kohl, Peter Ruckdeschel -Maintainer: Matthias Kohl +Authors at R: c(person("Matthias", "Kohl", role=c("cre", "cph"), email="Matthias.Kohl at stamats.de"), + person("Peter", "Ruckdeschel", role=c("aut", "cph"))) ByteCompile: yes LazyLoad: yes License: LGPL-3 Modified: branches/robast-1.0/pkg/ROptEstOld/DESCRIPTION =================================================================== --- branches/robast-1.0/pkg/ROptEstOld/DESCRIPTION 2014-11-25 09:11:41 UTC (rev 795) +++ branches/robast-1.0/pkg/ROptEstOld/DESCRIPTION 2014-12-04 18:04:00 UTC (rev 796) @@ -5,8 +5,7 @@ Description: Optimally robust estimation using S4 classes and methods. Old version still needed for current versions of ROptRegTS and RobRex. Depends: R(>= 2.14.0), methods, distr(>= 2.5.2), distrEx(>= 2.2), RandVar(>= 0.9.2), evd -Author: Matthias Kohl -Maintainer: Matthias Kohl +Authors at R: person("Matthias", "Kohl", role=c("cre", "cph"), email="Matthias.Kohl at stamats.de") LazyLoad: yes ByteCompile: yes License: LGPL-3 Modified: branches/robast-1.0/pkg/ROptRegTS/DESCRIPTION =================================================================== --- branches/robast-1.0/pkg/ROptRegTS/DESCRIPTION 2014-11-25 09:11:41 UTC (rev 795) +++ branches/robast-1.0/pkg/ROptRegTS/DESCRIPTION 2014-12-04 18:04:00 UTC (rev 796) @@ -3,11 +3,11 @@ Date: 2013-09-12 Title: Optimally Robust Estimation for Regression-Type Models Description: Optimally robust estimation for regression-type models using S4 classes and - methods + methods. Depends: R (>= 2.14.0), methods, distr(>= 2.5.2), distrEx(>= 2.5), RandVar(>= 0.9.2), ROptEstOld(>= 0.9.1) -Author: Matthias Kohl , Peter Ruckdeschel -Maintainer: Matthias Kohl +Authors at R: c(person("Matthias", "Kohl", role=c("cre", "cph"), email="Matthias.Kohl at stamats.de"), + person("Peter", "Ruckdeschel", role=c("aut", "cph"))) LazyLoad: yes ByteCompile: yes License: LGPL-3 Modified: branches/robast-1.0/pkg/RandVar/DESCRIPTION =================================================================== --- branches/robast-1.0/pkg/RandVar/DESCRIPTION 2014-11-25 09:11:41 UTC (rev 795) +++ branches/robast-1.0/pkg/RandVar/DESCRIPTION 2014-12-04 18:04:00 UTC (rev 796) @@ -2,11 +2,11 @@ Version: 1.0 Date: 2013-09-12 Title: Implementation of Random Variables -Description: Implementation of random variables by means of S4 classes and methods +Description: implements random variables by means of S4 classes and methods. Depends: R (>= 2.14.0), methods, distr(>= 2.5.2), distrEx(>= 2.5) Imports: startupmsg -Author: Matthias Kohl, Peter Ruckdeschel -Maintainer: Matthias Kohl +Authors at R: c(person("Matthias", "Kohl", role=c("cre", "cph"), email="Matthias.Kohl at stamats.de"), + person("Peter", "Ruckdeschel", role=c("aut", "cph"))) ByteCompile: yes LazyLoad: yes License: LGPL-3 Modified: branches/robast-1.0/pkg/RobAStRDA/DESCRIPTION =================================================================== --- branches/robast-1.0/pkg/RobAStRDA/DESCRIPTION 2014-11-25 09:11:41 UTC (rev 795) +++ branches/robast-1.0/pkg/RobAStRDA/DESCRIPTION 2014-12-04 18:04:00 UTC (rev 796) @@ -1,13 +1,13 @@ Package: RobAStRDA Version: 1.0 Date: 2013-09-12 -Title: sysdata.rda for Packages of RobASt - Family of Pkgs -Description: sysdata.rda for packages of RobASt - Family of Pkgs; is currently used by pkg +Title: Interpolation Grids for Packages of RobASt - Family of Pkgs +Description: sysdata.rda file for packages of RobASt - Family of Pkgs; is currently used by pkg RobExtremes only. Depends: R (>= 2.14.0), methods Imports: startupmsg -Author: Peter Ruckdeschel, Matthias Kohl -Maintainer: Peter Ruckdeschel +Authors at R: c(person("Matthias", "Kohl", role=c("aut", "cph")), + person("Peter", "Ruckdeschel", role=c("cre", "cph"), email="Peter.Ruckdeschel at itwm.fraunhofer.de")) LazyData: yes LazyLoad: yes ByteCompile: yes Modified: branches/robast-1.0/pkg/RobExtremes/DESCRIPTION =================================================================== --- branches/robast-1.0/pkg/RobExtremes/DESCRIPTION 2014-11-25 09:11:41 UTC (rev 795) +++ branches/robast-1.0/pkg/RobExtremes/DESCRIPTION 2014-12-04 18:04:00 UTC (rev 796) @@ -3,12 +3,13 @@ Date: 2013-09-11 Title: Optimally Robust Estimation for Extreme Value Distributions Description: Optimally robust estimation for extreme value distributions using S4 classes and methods (based on - packages distr, distrEx, distrMod, RobAStBase, and ROptEst) + packages distr, distrEx, distrMod, RobAStBase, and ROptEst). Depends: R (>= 2.14.0), methods, distrMod(>= 2.5.2), ROptEst(>= 0.9), robustbase(>= 0.8-0), evd, actuar Suggests: RUnit (>= 0.4.26), ismev (>= 1.39) Imports: RobAStRDA, distr, distrEx, RandVar, RobAStBase, startupmsg -Author: Peter Ruckdeschel, Matthias Kohl, Nataliya Horbenko -Maintainer: Peter Ruckdeschel +Authors at R: c(person("Nataliya", "Horbenko", role=c("aut", "cph")), + person("Matthias", "Kohl", role=c("aut", "cph")), + person("Peter", "Ruckdeschel", role=c("cre", "cph"), email="Peter.Ruckdeschel at itwm.fraunhofer.de")) LazyLoad: yes ByteCompile: yes License: LGPL-3 Modified: branches/robast-1.0/pkg/RobLox/DESCRIPTION =================================================================== --- branches/robast-1.0/pkg/RobLox/DESCRIPTION 2014-11-25 09:11:41 UTC (rev 795) +++ branches/robast-1.0/pkg/RobLox/DESCRIPTION 2014-12-04 18:04:00 UTC (rev 796) @@ -3,12 +3,12 @@ Date: 2013-09-12 Title: Optimally Robust Influence Curves and Estimators for Location and Scale Description: Functions for the determination of optimally robust influence curves and - estimators in case of normal location and/or scale + estimators in case of normal location and/or scale. Depends: R(>= 2.14.0), stats, distrMod(>= 2.5.2), RobAStBase(>= 0.9) Imports: lattice, RColorBrewer, Biobase, RandVar(>= 0.9.2), distr(>= 2.5.2) Suggests: MASS -Author: Matthias Kohl, Peter Ruckdeschel -Maintainer: Matthias Kohl +Authors at R: c(person("Matthias", "Kohl", role=c("cre", "cph"), email="Matthias.Kohl at stamats.de"), + person("Peter", "Ruckdeschel", role=c("aut", "cph"))) LazyLoad: yes ByteCompile: yes License: LGPL-3 Modified: branches/robast-1.0/pkg/RobLoxBioC/DESCRIPTION =================================================================== --- branches/robast-1.0/pkg/RobLoxBioC/DESCRIPTION 2014-11-25 09:11:41 UTC (rev 795) +++ branches/robast-1.0/pkg/RobLoxBioC/DESCRIPTION 2014-12-04 18:04:00 UTC (rev 796) @@ -6,8 +6,7 @@ estimators for preprocessing omics data, in particular gene expression data. Depends: R(>= 2.14.0), methods, Biobase, affy, beadarray, distr(>= 2.5.2), RobLox(>= 0.9.2), lattice, RColorBrewer,BiocGenerics,distrMod(>= 2.5.2) -Author: Matthias Kohl -Maintainer: Matthias Kohl +Authors at R: person("Matthias", "Kohl", role=c("cre", "cph"), email="Matthias.Kohl at stamats.de") LazyLoad: yes ByteCompile: yes License: LGPL-3 Modified: branches/robast-1.0/pkg/RobRex/DESCRIPTION =================================================================== --- branches/robast-1.0/pkg/RobRex/DESCRIPTION 2014-11-25 09:11:41 UTC (rev 795) +++ branches/robast-1.0/pkg/RobRex/DESCRIPTION 2014-12-04 18:04:00 UTC (rev 796) @@ -2,12 +2,11 @@ Version: 1.0 Date: 2013-09-12 Title: Optimally Robust Influence Curves for Regression and Scale -Description: functions for the determination of optimally robust influence curves in case of +Description: Functions for the determination of optimally robust influence curves in case of linear regression with unknown scale and standard normal distributed errors where the regressor is random. Depends: R (>= 2.14.0), ROptRegTS(>= 0.9.2) -Author: Matthias Kohl -Maintainer: Matthias Kohl +Authors at R: person("Matthias", "Kohl", role=c("cre", "cph"), email="Matthias.Kohl at stamats.de") LazyLoad: yes ByteCompile: yes License: LGPL-3 From noreply at r-forge.r-project.org Thu Dec 4 20:13:24 2014 From: noreply at r-forge.r-project.org (noreply at r-forge.r-project.org) Date: Thu, 4 Dec 2014 20:13:24 +0100 (CET) Subject: [Robast-commits] r797 - in branches/robast-1.0/pkg: ROptEst RobAStBase RobAStRDA RobExtremes Message-ID: <20141204191324.9234A183CEB@r-forge.r-project.org> Author: ruckdeschel Date: 2014-12-04 20:13:24 +0100 (Thu, 04 Dec 2014) New Revision: 797 Modified: branches/robast-1.0/pkg/ROptEst/DESCRIPTION branches/robast-1.0/pkg/RobAStBase/DESCRIPTION branches/robast-1.0/pkg/RobAStRDA/DESCRIPTION branches/robast-1.0/pkg/RobExtremes/DESCRIPTION Log: a little more details on "contribution" Modified: branches/robast-1.0/pkg/ROptEst/DESCRIPTION =================================================================== --- branches/robast-1.0/pkg/ROptEst/DESCRIPTION 2014-12-04 18:04:00 UTC (rev 796) +++ branches/robast-1.0/pkg/ROptEst/DESCRIPTION 2014-12-04 19:13:24 UTC (rev 797) @@ -9,6 +9,8 @@ Imports: startupmsg Suggests: RobLox, MASS Authors at R: c(person("Matthias", "Kohl", role=c("cre", "cph"), email="Matthias.Kohl at stamats.de"), + person("Mykhailo", "Pupashenko", role="ctb", comment="contributed wrapper functions for diagnostic plots"), + person("Gerald", "Kroisandt", role="ctb", comment="contributed testing routines"), person("Peter", "Ruckdeschel", role=c("aut", "cph"))) ByteCompile: yes LazyLoad: yes Modified: branches/robast-1.0/pkg/RobAStBase/DESCRIPTION =================================================================== --- branches/robast-1.0/pkg/RobAStBase/DESCRIPTION 2014-12-04 18:04:00 UTC (rev 796) +++ branches/robast-1.0/pkg/RobAStBase/DESCRIPTION 2014-12-04 19:13:24 UTC (rev 797) @@ -9,6 +9,9 @@ Imports: startupmsg Authors at R: c(person("Matthias", "Kohl", role=c("cre", "cph"), email="Matthias.Kohl at stamats.de"), person("Peter", "Ruckdeschel", role=c("aut", "cph")), + person("Mykhailo", "Pupashenko", role="ctb", comment="contributed wrapper functions for diagnostic plots"), + person("Gerald", "Kroisandt", role="ctb", comment="contributed testing routines"), + person("Peter", "Ruckdeschel", role=c("aut", "cph")), person("R Core Team", role = c("ctb", "cph"), comment="for source file 'format.perc'")) ByteCompile: yes Modified: branches/robast-1.0/pkg/RobAStRDA/DESCRIPTION =================================================================== --- branches/robast-1.0/pkg/RobAStRDA/DESCRIPTION 2014-12-04 18:04:00 UTC (rev 796) +++ branches/robast-1.0/pkg/RobAStRDA/DESCRIPTION 2014-12-04 19:13:24 UTC (rev 797) @@ -7,6 +7,10 @@ Depends: R (>= 2.14.0), methods Imports: startupmsg Authors at R: c(person("Matthias", "Kohl", role=c("aut", "cph")), + person("Bernhard", "Spangl", role="ctb", comment="helped with manual smoothing of the interpolators"), + person("Mykhailo", "Pupashenko", role="ctb", comment="helped with manual smoothing of the interpolators"), + person("Daria", "Pupashenko", role="ctb", comment="helped with manual smoothing of the interpolators"), + person("Gerald", "Kroisandt", role="ctb", comment="helped with manual smoothing of the interpolators"), person("Peter", "Ruckdeschel", role=c("cre", "cph"), email="Peter.Ruckdeschel at itwm.fraunhofer.de")) LazyData: yes LazyLoad: yes Modified: branches/robast-1.0/pkg/RobExtremes/DESCRIPTION =================================================================== --- branches/robast-1.0/pkg/RobExtremes/DESCRIPTION 2014-12-04 18:04:00 UTC (rev 796) +++ branches/robast-1.0/pkg/RobExtremes/DESCRIPTION 2014-12-04 19:13:24 UTC (rev 797) @@ -7,7 +7,9 @@ Depends: R (>= 2.14.0), methods, distrMod(>= 2.5.2), ROptEst(>= 0.9), robustbase(>= 0.8-0), evd, actuar Suggests: RUnit (>= 0.4.26), ismev (>= 1.39) Imports: RobAStRDA, distr, distrEx, RandVar, RobAStBase, startupmsg -Authors at R: c(person("Nataliya", "Horbenko", role=c("aut", "cph")), +Authors at R: c(person("Nataliya", "Horbenko", role=c("aut","cph")), + person("Daria", "Pupashenko", role="ctb", comment="contributed MDE-estimation for GEV distribution in the framework of her PhD thesis 2011--14"), + person("Gerald", "Kroisandt", role="ctb", comment="contributed testing routines"), person("Matthias", "Kohl", role=c("aut", "cph")), person("Peter", "Ruckdeschel", role=c("cre", "cph"), email="Peter.Ruckdeschel at itwm.fraunhofer.de")) LazyLoad: yes From noreply at r-forge.r-project.org Wed Dec 17 20:40:19 2014 From: noreply at r-forge.r-project.org (noreply at r-forge.r-project.org) Date: Wed, 17 Dec 2014 20:40:19 +0100 (CET) Subject: [Robast-commits] r798 - branches/robast-1.0/pkg/RobExtremes/R Message-ID: <20141217194019.30EF9183E26@r-forge.r-project.org> Author: ruckdeschel Date: 2014-12-17 20:40:18 +0100 (Wed, 17 Dec 2014) New Revision: 798 Modified: branches/robast-1.0/pkg/RobExtremes/R/GEVFamily.R branches/robast-1.0/pkg/RobExtremes/R/GEVFamilyMuUnknown.R Log: [RobExtremes] found a bug in L2deriv in GEV if shape <0 Modified: branches/robast-1.0/pkg/RobExtremes/R/GEVFamily.R =================================================================== --- branches/robast-1.0/pkg/RobExtremes/R/GEVFamily.R 2014-12-04 19:13:24 UTC (rev 797) +++ branches/robast-1.0/pkg/RobExtremes/R/GEVFamily.R 2014-12-17 19:40:18 UTC (rev 798) @@ -342,7 +342,7 @@ Lambda1 <- function(x) { y <- x*0 - ind <- (x > tr-sc/k) # = [later] (x1>0) + ind <- if(k>0)(x > tr-sc/k) else (x0) x <- (x[ind]-tr)/sc x1 <- 1 + k * x y[ind] <- (x*(1-x1^(-1/k))-1)/x1/sc @@ -351,7 +351,7 @@ } Lambda2 <- function(x) { y <- x*0 - ind <- (x > tr-sc/k) # = [later] (x1>0) + ind <- if(k>0)(x > tr-sc/k) else (x0) x <- (x[ind]-tr)/sc x1 <- 1 + k * x x2 <- x / x1 Modified: branches/robast-1.0/pkg/RobExtremes/R/GEVFamilyMuUnknown.R =================================================================== --- branches/robast-1.0/pkg/RobExtremes/R/GEVFamilyMuUnknown.R 2014-12-04 19:13:24 UTC (rev 797) +++ branches/robast-1.0/pkg/RobExtremes/R/GEVFamilyMuUnknown.R 2014-12-17 19:40:18 UTC (rev 798) @@ -311,7 +311,7 @@ k1 <- k+1 Lambda0 <- function(x) { y <- x*0 - ind <- (x > tr-sc/k) # = [later] (x1>0) + ind <- if(k>0)(x > tr-sc/k) else (x0) x <- (x[ind]-tr)/sc x1 <- 1 + k * x t1 <- x1^(-1/k) @@ -322,7 +322,7 @@ Lambda1 <- function(x) { y <- x*0 - ind <- (x > tr-sc/k) # = [later] (x1>0) + ind <- if(k>0)(x > tr-sc/k) else (x0) x <- (x[ind]-tr)/sc x1 <- 1 + k * x y[ind] <- (x*(1-x1^(-1/k))-1)/x1/sc @@ -331,7 +331,7 @@ } Lambda2 <- function(x) { y <- x*0 - ind <- (x > tr-sc/k) # = [later] (x1>0) + ind <- if(k>0)(x > tr-sc/k) else (x0) x <- (x[ind]-tr)/sc x1 <- 1 + k * x x2 <- x / x1 From noreply at r-forge.r-project.org Thu Dec 18 15:49:46 2014 From: noreply at r-forge.r-project.org (noreply at r-forge.r-project.org) Date: Thu, 18 Dec 2014 15:49:46 +0100 (CET) Subject: [Robast-commits] r799 - branches/robast-1.0/pkg/RobExtremesBuffer Message-ID: <20141218144946.6E3641810FB@r-forge.r-project.org> Author: ruckdeschel Date: 2014-12-18 15:49:46 +0100 (Thu, 18 Dec 2014) New Revision: 799 Added: branches/robast-1.0/pkg/RobExtremesBuffer/interpolMBREGEVFamily.csv branches/robast-1.0/pkg/RobExtremesBuffer/interpolMBREGEVFamily.txt branches/robast-1.0/pkg/RobExtremesBuffer/interpolMBREGEVUFamily.csv branches/robast-1.0/pkg/RobExtremesBuffer/interpolMBREGEVUFamily.txt branches/robast-1.0/pkg/RobExtremesBuffer/interpolMBREGeneralizedParetoFamily.csv branches/robast-1.0/pkg/RobExtremesBuffer/interpolOMSEGEVFamily.csv branches/robast-1.0/pkg/RobExtremesBuffer/interpolOMSEGEVFamily.txt branches/robast-1.0/pkg/RobExtremesBuffer/interpolOMSEGEVUFamily.csv branches/robast-1.0/pkg/RobExtremesBuffer/interpolOMSEGEVUFamily.txt branches/robast-1.0/pkg/RobExtremesBuffer/interpolOMSEGeneralizedParetoFamily.csv branches/robast-1.0/pkg/RobExtremesBuffer/interpolOMSEGeneralizedParetoFamily.txt branches/robast-1.0/pkg/RobExtremesBuffer/interpolRMXEGEVFamily.csv branches/robast-1.0/pkg/RobExtremesBuffer/interpolRMXEGEVFamily.txt branches/robast-1.0/pkg/RobExtremesBuffer/interpolRMXEGEVUFamily.csv branches/robast-1.0/pkg/RobExtremesBuffer/interpolRMXEGEVUFamily.txt branches/robast-1.0/pkg/RobExtremesBuffer/interpolRMXEGeneralizedParetoFamily.csv branches/robast-1.0/pkg/RobExtremesBuffer/interpolRMXEGeneralizedParetoFamily.txt Log: [RobExtremesBuffer] first results as to Lagrange-multipliers for negative shape respectively for Mu Unknown Added: branches/robast-1.0/pkg/RobExtremesBuffer/interpolMBREGEVFamily.csv =================================================================== --- branches/robast-1.0/pkg/RobExtremesBuffer/interpolMBREGEVFamily.csv (rev 0) +++ branches/robast-1.0/pkg/RobExtremesBuffer/interpolMBREGEVFamily.csv 2014-12-18 14:49:46 UTC (rev 799) @@ -0,0 +1,656 @@ 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branches/robast-1.0/pkg/RobExtremes/inst/AddMaterial/interpolation Message-ID: <20141219140240.E145B180475@r-forge.r-project.org> Author: ruckdeschel Date: 2014-12-19 15:02:39 +0100 (Fri, 19 Dec 2014) New Revision: 800 Modified: branches/robast-1.0/pkg/RobExtremes/inst/AddMaterial/interpolation/interpolationscripts.R branches/robast-1.0/pkg/RobExtremes/inst/AddMaterial/interpolation/plotInterpol.R Log: [RobExtremes] revised interpolation scripts Modified: branches/robast-1.0/pkg/RobExtremes/inst/AddMaterial/interpolation/interpolationscripts.R =================================================================== --- branches/robast-1.0/pkg/RobExtremes/inst/AddMaterial/interpolation/interpolationscripts.R 2014-12-18 14:49:46 UTC (rev 799) +++ branches/robast-1.0/pkg/RobExtremes/inst/AddMaterial/interpolation/interpolationscripts.R 2014-12-19 14:02:39 UTC (rev 800) @@ -5,7 +5,8 @@ ### open R session require(RobExtremes) ### -> change this according to where you checked out the svn repo: -.basepath <- "C:/rtest/RobASt/branches/robast-1.0./pkg" +#.basepath <- "C:/rtest/RobASt/branches/robast-1.0./pkg" +.basepath <- "/p/fm/PeterRuckdeschel/rtest/RobASt/branches/robast-1.0/pkg" .myFolderTo <- file.path(.basepath,"RobExtremesBuffer") ## <- oldwd <- getwd() @@ -71,7 +72,7 @@ if(FALSE){ ## Block05:: interpol.RMXEnegGEVUFamily.csv PF <- GEVFamilyMuUnknown(withPos=FALSE, ..name="GEVU Family") - .svInt(.RMXE.th, PFam=PF, xiGrid = xiGridneg,namFzus="neg") + .svInt(.RMXE.th, PFam=PF, xiGrid = xiGridneg,namFzus="neg") ###Problem } if(FALSE){ ## Block06:: interpol.OMSEpos1GEVUFamily.csv @@ -86,7 +87,7 @@ if(FALSE){ ## Block08:: interpol.OMSEpos3GEVUFamily.csv PF <- GEVFamilyMuUnknown(withPos=FALSE, ..name="GEVU Family") - .svInt(.OMSE.th, PFam=PF, xiGrid = xiGridpos4,namFzus="pos3") + .svInt(.OMSE.th, PFam=PF, xiGrid = xiGridpos4,namFzus="pos3") ### 16.12.14 erledigt... } if(FALSE){ ## Block09:: interpol.OMSEpos4GEVUFamily.csv @@ -96,7 +97,7 @@ if(FALSE){ ## Block10:: interpol.OMSEnegGEVUFamily.csv PF <- GEVFamilyMuUnknown(withPos=FALSE, ..name="GEVU Family") - .svInt(.OMSE.th, PFam=PF, xiGrid = xiGridneg,namFzus="neg") + .svInt(.OMSE.th, PFam=PF, xiGrid = xiGridneg,namFzus="neg") ## Problem } if(FALSE){ ## Block11:: interpol.MBREpos1GEVUFamily.csv @@ -121,13 +122,13 @@ if(FALSE){ ## Block15:: interpol.MBREnegGEVUFamily.csv PF <- GEVFamilyMuUnknown(withPos=FALSE, ..name="GEVU Family") - .svInt(.MBRE.th, PFam=PF, xiGrid = xiGridneg,namFzus="neg") + .svInt(.MBRE.th, PFam=PF, xiGrid = xiGridneg,namFzus="neg") ### Problem } if(FALSE){ ## Block16:: interpol.RMXEnegGEVFamily.csv PF <- GEVFamily(withPos=FALSE) - .svInt(.RMXE.th, PFam=PF, xiGrid = xiGridneg, namFzus="neg") -} + .svInt(.RMXE.th, PFam=PF, xiGrid = xiGridneg, namFzus="neg") ### Problem +} ####erledigt 16.12. if(FALSE){ ## Block17:: interpol.OMSEnegGEVFamily.csv PF <- GEVFamily(withPos=FALSE) Modified: branches/robast-1.0/pkg/RobExtremes/inst/AddMaterial/interpolation/plotInterpol.R =================================================================== --- branches/robast-1.0/pkg/RobExtremes/inst/AddMaterial/interpolation/plotInterpol.R 2014-12-18 14:49:46 UTC (rev 799) +++ branches/robast-1.0/pkg/RobExtremes/inst/AddMaterial/interpolation/plotInterpol.R 2014-12-19 14:02:39 UTC (rev 800) @@ -7,6 +7,7 @@ ## Gridnam in (Sn,OMSE,RMXE,MBRE) ## uses partial matching!! ## Famnam in "Generalized Pareto Family", ## uses partial matching!! ## "GEV Family", + ## "GEVU Family", ## "Gamma family", ## "Weibull Family" ## whichLM is ignored for Gridnam == Sn @@ -54,14 +55,15 @@ # with columnwise restrictions of \code{Y} (and \code{NULL} entries # are interpreted as no restriction). } -# file <- file.path(baseDir, "branches/robast-0.9/pkg/RobExtremesBuffer/sysdata.rda") - file <- file.path(baseDir, "branches/robast-0.9/pkg/RobAStRDA/R/sysdata.rda") + file <- file.path(baseDir, "branches/robast-1.0/pkg/RobExtremesBuffer/sysdata.rda") +# file <- file.path(baseDir, "branches/robast-1.0/pkg/RobAStRDA/R/sysdata.rda") if(!file.exists(file)) stop("Fehler mit Checkout") nE <- new.env() load(file, envir=nE) Gnams <- c("Sn","OMSE","RMXE","MBRE") Fnams <- c("Generalized Pareto Family", "GEV Family", + "GEVU Family", "Gamma family", "Weibull Family") Gridnam <- Gnams[pmatch(Gridnam, Gnams)] @@ -86,7 +88,8 @@ print(round((gr0[gr0[,1]>5,1]),3)) print(round(summary(diff(gr0[,1])),3)) print(c("n"=sum(!is.na(gr0[,1])),"NA"=sum(is.na(gr0[,1])))) - z <- if(whichLM=="all") 13 else 1 + z0 <- if(Famnam=="GEVU Family") 25 else 13 + z <- if(whichLM=="all") z0 else 1 if(is.null(plotGridRestriction)){ plotGridRestriction <- list(rep(TRUE, nrow(gr))) pl<- vector("list",z) @@ -101,7 +104,7 @@ namesLM <- c("b","a.a[sc]","a.a[sh]","z.i[sc]","z.i[sh]", "A.a[sc,sc]","A.a[sc,sh]","A.a[sh,sc]","A.a[sh,sh]", "A.i[sc,sc]","A.i[sc,sh]","A.i[sh,sc]","A.i[sh,sh]") - if(!isSn) if(whichLM!="all") if(whichLM<1 | whichLM>13) stop("Falsche Koordinate") + if(!isSn) if(whichLM!="all") if(whichLM<1 | whichLM>z0) stop("Falsche Koordinate") if(missing(ylab)||is.null(ylab)) ylab <- "LM" if(missing(xlab)||is.null(xlab)) xlab <- expression(xi) if(missing(main)||is.null(main)) main <- paste(Gridnam,gsub(" [F,f]amily","",Famnam),sep="-") @@ -110,8 +113,9 @@ if(missing(col)||is.null(col)) col <- 1:3 if(!isSn) if(whichLM=="all"){ eval(prehook) - par(mfrow=c(4,4)) - for(i in 2:14){ + if(z0==25) par(mfrow=c(6,6)) else par(mfrow=c(4,4)) + if(z0==25) upP=26 else upP=14 + for(i in 2:upP){ pla <- plotGridRestriction[[i-1]] if(is.null(pla)) pla <- 1:nrow(gr) matplot(gr[pla,1], cbind(gr0[pla,i],gr[pla,i]), xlab=xlab, type="n", From noreply at r-forge.r-project.org Fri Dec 19 16:14:01 2014 From: noreply at r-forge.r-project.org (noreply at r-forge.r-project.org) Date: Fri, 19 Dec 2014 16:14:01 +0100 (CET) Subject: [Robast-commits] r801 - branches/robast-1.0/pkg/RobExtremesBuffer Message-ID: <20141219151401.A120C184672@r-forge.r-project.org> Author: ruckdeschel Date: 2014-12-19 16:14:01 +0100 (Fri, 19 Dec 2014) New Revision: 801 Added: branches/robast-1.0/pkg/RobExtremesBuffer/PeterLMScripts.R branches/robast-1.0/pkg/RobExtremesBuffer/sysdata.rda Modified: branches/robast-1.0/pkg/RobExtremesBuffer/interpolRMXEGEVUFamily.csv Log: [RobExtremesBuffer] first intermediat results on our way to produce comprehensive interpolation grids in case GEVMuUnknown as well Added: branches/robast-1.0/pkg/RobExtremesBuffer/PeterLMScripts.R =================================================================== --- branches/robast-1.0/pkg/RobExtremesBuffer/PeterLMScripts.R (rev 0) +++ branches/robast-1.0/pkg/RobExtremesBuffer/PeterLMScripts.R 2014-12-19 15:14:01 UTC (rev 801) @@ -0,0 +1,172 @@ +### preparations: +# (0) R-forge checkout von distr und robast machen; Pakete installieren +###### +# Reihenfolge +#### *: von r-forge, **: von CRAN, ***: von BioConductor +# vorab: +# CRAN: ** sfsmisc, setRNG, fBasics, fGarch, mvtnorm, lattice, RColorBrewer +# BioConductor: *** Biobase, affy, beadarray +# +# * RobAStRDA +# * startupmsg +# * SweaveListingUtils +# * distr +# * distrEx +# * distrTeach +# * distrRmetrics +# * distrSim +# * distrEllipse +# * distrTEst +# * RandVar +# * distrMod +# * distrDoc +# * RobAStBase +# * ROptEst +# * RobExtremes +# * RobLox +# * RobLoxBioC +# * ROptEstOld +# * ROptRegTS +# * RobRex +# +## evtl naechste Zeile modifizieren +baseDir0 <- "C:/rtest/RobASt" +interpolDir <- "branches/robast-1.0/pkg/RobExtremes/inst/AddMaterial/interpolation" +interpolFile <- "plotInterpol.R" +## +# (1) Paket laden +require(RobExtremes) +## +## in \branches\robast-0.9\pkg\RobExtremes\inst\AddMaterial\interpolation +## file plotInterpol.R einsourcen +source(file.path(baseDir0,interpolDir, interpolFile)) + +### .saveGridToRDA und .computeInterpolators aus Namespace holen: +.saveGridToRda <- RobAStRDA:::.saveGridToRda +.computeInterpolators <- RobAStRDA:::.computeInterpolators + +## Risiken auf P+M+B+G+MP+D (jeder 22) +#P OMSE.GEV, OMSE.Gamma +#MP MBRE.GEV, MBRE.Gamma, +#M RMXE.GEV, RMXE.Gamma +#G OMSE.GPD, OMSE.Weibull +#D MBRE.GPD MBRE.Weibull +#B RMXE.GPD RMXE.Weibull + +## in den Plots: schwarz: ungegl?ttet; +## rot: bereits im Gitter vorhandene Gl?ttung; +## gr?n: aktuelle TestGl?ttung + +## Definition von Shortcuts +## Peter: / bei Euch entsprechend erste beide Argumente von myplot2, myplot3, zu ersetzen +myplot2 <- function(whichLM, plotGridRestriction = NULL, + df = NULL, gridRestrForSmooth = NULL, withSmooth=TRUE, ...) + plotLM("OMSE",Famnam="GEV Fam",whichLM=whichLM, baseDir=baseDir0, withSmooth=withSmooth, + plotGridRestriction=plotGridRestriction, + smoothtry = TRUE, df = df, + gridRestrForSmooth = gridRestrForSmooth, ...) +myplot3 <- function(whichLM, plotGridRestriction = NULL, + df = NULL, gridRestrForSmooth = NULL, withSmooth=TRUE, ...) + plotLM("OMSE",Famnam="Gam",whichLM=whichLM, baseDir=baseDir0, withSmooth=withSmooth, + plotGridRestriction=plotGridRestriction, + smoothtry = TRUE, df = df, + gridRestrForSmooth = gridRestrForSmooth, ...) + +### folder setzen +oldwd <- getwd() +.basepath <- file.path(baseDir0, "branches/robast-1.0/pkg") +.myFolderFrom <- file.path(.basepath,"RobExtremesBuffer") +### Zwischenspeichern des rda-files +myRDA1 <- file.path(.basepath,"RobExtremesBuffer/sysdata.rda") +### Endort des rda-files +myRDA <- file.path(.basepath,"RobAStRDA/R/sysdata.rda") +CSVFiles <- grep("\\.csv$", dir(.myFolderFrom), value=TRUE) +CSVFiles <- paste(.myFolderFrom, CSVFiles, sep="/") +CSVFiles2 <- file.path(.myFolderFrom,"interpolOMSEGEVFamily.csv") +CSVFiles3 <- file.path(.myFolderFrom,"interpolOMSEGammafamily.csv") +file.copy(from=myRDA,to=myRDA1) + +### 1. Runde +### "OMSE"-"GEV" +## df und gridR Werte durch Ausprobieren gewonnen + +myplot2(1, gridR=c(1:183,228:234,242:286,293), withS=FALSE) +myplot2(2, gridR=c(1:183,228:234,242:286,293), df=30,plotG=1:290, withSmooth=FALSE) +myplot2(3, gridR=c(1:183,228:234,242:286,293), df=30,plotG=1:290, withSmooth=FALSE) +myplot2(4, gridR=c(1:183,228:234,242:286,293), df=30,plotG=1:290, withSmooth=FALSE) +myplot2(5, gridR=c(1:183,228:234,242:286,293), df=30,plotG=1:290, withSmooth=FALSE) +myplot2(6, gridR=c(1:183,228:234,242:286,293), df=30,plotG=1:290, withSmooth=FALSE) +myplot2(7, gridR=c(1:183,228:234,242:286,293), df=14,plotG=1:290, withSmooth=FALSE) +myplot2(8, gridR=c(1:183,228:234,242:286,293), df=14,plotG=1:290, withSmooth=FALSE) +myplot2(9, gridR=c(1:183,228:234,242:286,293), df=18,plotG=1:290, withSmooth=FALSE) +myplot2(10, gridR=c(1:183,228:234,242:286,293), df=18,plotG=1:290, withSmooth=FALSE) +myplot2(11, gridR=c(1:183,228:234,242:286,293), df=8,plotG=1:290, withSmooth=FALSE) +myplot2(12, gridR=c(1:183,228:234,242:286,293), df=8,plotG=1:290, withSmooth=FALSE) +myplot2(13, gridR=c(1:183,228:234,242:286,293), df=18,plotG=1:290, withSmooth=FALSE) + + +### sammeln der gridR und df Werte (ggf in listen) +gridR20 <- c(1:183,228:234,242:286,293) +gridR2 <- list(gridR20,gridR20,gridR20,gridR20,gridR20,gridR20,gridR20,gridR20, + gridR20,gridR20,gridR20,gridR20,gridR20) +dfR2 <- list(NULL,30,30,30,30,30,14,14,18,18,8,8,18) + +### alle Plotten zur Kontrolle +myplot2("all", df=20, gridR=gridR2, withSmooth=FALSE, pre=windows()) + +### schreiben der gegl?tteten Gitter ins rda-file, +## aber zun?chst noch woanders (myRDA1) gespeichert: +.saveGridToRda(CSVFiles2, toFileRDA = myRDA1, withMerge = FALSE, + withPrint = TRUE, withSmooth = TRUE, df = dfR2, + gridRestrForSmooth=gridR2) + +### 1. Runde +### "OMSE"-"Gamma" +## df und gridR Werte durch Ausprobieren gewonnen +gridR30=-c(1:2,176:179,183:213,268,276,284:286,295:296,300,305,310:324,339:345,351:362,368:415,419:472,508:514,520:528,523:543) +myplot3(1, gridR=gridR30,df=95, plotG=2:530, withSmooth=FALSE, pre=substitute(print(gr0[,c(1,3)]))) +myplot3(2, gridR=gridR30,df=65, plotG=2:530, withSmooth=FALSE, pre=substitute(print(gr0[,c(1,3)]))) +myplot3(3, gridR=gridR30,df=55, plotG=2:530, withSmooth=FALSE, pre=substitute(print(gr0[,c(1,3)]))) +myplot3(4, gridR=gridR30,df=50, plotG=1:30, withSmooth=FALSE, pre=substitute(print(gr0[,c(1,3)]))) +myplot3(5, gridR=gridR30,df=85, plotG=1:30, withSmooth=FALSE, pre=substitute(print(gr0[,c(1,3)]))) +myplot3(6, gridR=gridR30,df=85,withSmooth=FALSE,plotG=160:300, pre=substitute(print(gr0[,c(1,7)]))) +myplot3(7, gridR=gridR30,withSmooth=FALSE,plotG=160:300, df=29, pre=substitute(print(gr0[,c(1,8)]))) +myplot3(8, gridR=gridR30,withSmooth=FALSE,plotG=160:300, df=29, pre=substitute(print(gr0[,c(1,8)]))) +myplot3(9, gridR=gridR30,withSmooth=FALSE,plotG=160:300, df=45, pre=substitute(print(gr0[,c(1,8)]))) +myplot3(10,gridR=gridR30,withSmooth=FALSE,plotG=1:30, df=80, pre=substitute(print(gr0[,c(1,11)]))) +myplot3(11,gridR=gridR30,withSmooth=FALSE,plotG=1:30, df=40, pre=substitute(print(gr0[,c(1,11)]))) +myplot3(12,gridR=gridR30,withSmooth=FALSE,plotG=1:30, df=40, pre=substitute(print(gr0[,c(1,11)]))) +myplot3(13,gridR=gridR30,withSmooth=FALSE,plotG=1:30, df=90, pre=substitute(print(gr0[,c(1,11)]))) + +### sammeln der gridR, plotR und df Werte (ggf in listen) +gridR3 <- list(gridR30,gridR30,gridR30,gridR30,gridR30,gridR30,gridR30,gridR30, + gridR30,gridR30,gridR30,gridR30) +dfR3 <- list(95,65,55,50,85,85,29,29,45,80,40,40,90) + +### sammeln der gridR, plotR und df Werte (ggf in listen) +### alle Plotten zur Kontrolle +myplot3("all", df=dfR3, gridR=gridR3, plotG=-c(1:2), withSmooth=FALSE, pre=windows()) +### schreiben der gegl?tteten Gitter ins rda-file, +## aber zun?chst noch woanders (myRDA1) gespeichert: +.saveGridToRda(CSVFiles3, toFileRDA = myRDA1, withMerge = FALSE, + withPrint = TRUE, withSmooth = TRUE, df = dfR3, + gridRestrForSmooth=gridR3) + +if(getRversion()>"2.16"){ +### generierung der Interpolatoren (in R>3.0) +.computeInterpolators(myRDA1, myRDA,withSmoothFct = TRUE) +} +######################################---bis hierher mit R-3.0.0 laufen lassen ## + +######################################---ab hier mit R-2.15.2 laufen lassen ## +if(getRversion()<"2.16"){ +### generierung der Interpolatoren (in R<=2.15) +## folgenden Code einsourcen: +### change adequately: +.baseDir.loc <- "C:/rtest/RobASt" +.basepath <- file.path(.baseDir.loc,"branches/robast-0.9/pkg") +myRDA <- file.path(.basepath,"RobAStRDA/R/sysdata.rda") +require(RobAStRDA) +RobAStRDA:::.computeInterpolators(myRDA, myRDA,withSmoothFct = TRUE) +} + Modified: branches/robast-1.0/pkg/RobExtremesBuffer/interpolRMXEGEVUFamily.csv =================================================================== --- branches/robast-1.0/pkg/RobExtremesBuffer/interpolRMXEGEVUFamily.csv 2014-12-19 14:02:39 UTC (rev 800) +++ branches/robast-1.0/pkg/RobExtremesBuffer/interpolRMXEGEVUFamily.csv 2014-12-19 15:14:01 UTC (rev 801) @@ -1,138 +1,3 @@ -"-0.49499999999999999555911" " 2.29356536954757128654592" "-0.09978510136079293824096" "-0.03658506302152747524659" "-0.22630310910405751489982" "-0.18854637841160173938881" " 1.02490350796023954593750" "-0.70090844691307419012105" "-0.70090844691307419012105" " 1.03530402557312362077369" " 1.02490350654925510553994" "-0.70090844468035562453423" "-0.70090844468035573555653" " 1.03530402698428725116742" -"-0.49171140939597313135323" " 2.29383470216341844860608" "-0.10061953044952118285771" "-0.03724225316116702710900" "-0.22592038778878395510752" "-0.18772214592137401178995" " 1.02729443288326360850249" "-0.70032880693799481885975" "-0.70032880693799492988205" " 1.04122403260354201570692" " 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Date: 2014-12-21 19:03:35 +0100 (Sun, 21 Dec 2014) New Revision: 802 Modified: branches/robast-1.0/pkg/RobExtremesBuffer/interpolRMXEGEVUFamily.csv Log: [RobExtremesBuffer] first results from RMXE for GEVU Modified: branches/robast-1.0/pkg/RobExtremesBuffer/interpolRMXEGEVUFamily.csv =================================================================== --- branches/robast-1.0/pkg/RobExtremesBuffer/interpolRMXEGEVUFamily.csv 2014-12-19 15:14:01 UTC (rev 801) +++ branches/robast-1.0/pkg/RobExtremesBuffer/interpolRMXEGEVUFamily.csv 2014-12-21 18:03:35 UTC (rev 802) @@ -1,3 +1,126 @@ +"-0.494999999999999995559108" " 2.922489840726012477745144" " 0.307096306938703045297245" "-0.360137317742298290745850" " 0.096260411085311081702542" " 0.024043531884167017309561" "-0.245905456981548004025129" "-0.141919140921611647288003" " 1.915658799249858823543491" "-1.177897247986545714582007" " 0.201623687864148110060469" "-1.177897247986545492537402" " 1.918758849143964440031596" 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"-0.920699250029496263358908" " 0.216005459262286259036756" "-0.920699250029496263358908" " 1.372109324652386108667201" +"-0.320704697986577191848312" " 2.809506181616269859802060" " 0.294829865355682563254902" "-0.343702454589979944366007" " 0.071864227702596455982231" " 0.063048193738991092915924" "-0.234890373064763735566629" "-0.114202853428356801424037" " 1.923967961077067245767580" "-0.843959562041132538290356" " 0.216376542121536147300631" "-0.843959562041132649312658" " 1.683275454717375385627065" "-0.918478556740195739571675" " 0.216376542121536202811782" "-0.918478556740195850593977" " 1.379297372718772507482754" " 1.923967954413609460218026" "-0.843959554654721388899929" " 0.216376542722207354518815" "-0.843959554654721388899929" " 1.683275449310124294299840" "-0.918478553402419128914858" " 0.216376542722207354518815" "-0.918478553402419128914858" " 1.379297384755163946579160" [TRUNCATED] To get the complete diff run: svnlook diff /svnroot/robast -r 802 From noreply at r-forge.r-project.org Mon Dec 22 12:31:54 2014 From: noreply at r-forge.r-project.org (noreply at r-forge.r-project.org) Date: Mon, 22 Dec 2014 12:31:54 +0100 (CET) Subject: [Robast-commits] r803 - branches/robast-1.0/pkg/RobExtremesBuffer Message-ID: <20141222113154.DBB5C1873A8@r-forge.r-project.org> Author: ruckdeschel Date: 2014-12-22 12:31:54 +0100 (Mon, 22 Dec 2014) New Revision: 803 Modified: branches/robast-1.0/pkg/RobExtremesBuffer/interpolRMXEGEVUFamily.csv Log: [RobExtremesBuffer] next results from RMXE for GEVU Modified: branches/robast-1.0/pkg/RobExtremesBuffer/interpolRMXEGEVUFamily.csv =================================================================== --- branches/robast-1.0/pkg/RobExtremesBuffer/interpolRMXEGEVUFamily.csv 2014-12-21 18:03:35 UTC (rev 802) +++ branches/robast-1.0/pkg/RobExtremesBuffer/interpolRMXEGEVUFamily.csv 2014-12-22 11:31:54 UTC (rev 803) @@ -373,5 +373,35 @@ " 3.8746438746438744971101" " 9.2812041232667024104330" "-0.1548890184815852055777" 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