From noreply at r-forge.r-project.org Fri Jun 7 15:09:50 2013 From: noreply at r-forge.r-project.org (noreply at r-forge.r-project.org) Date: Fri, 7 Jun 2013 15:09:50 +0200 (CEST) Subject: [Robast-commits] r668 - branches/robast-0.9/pkg/RobExtremesBuffer Message-ID: <20130607130951.1112518535F@r-forge.r-project.org> Author: bspangl Date: 2013-06-07 15:09:50 +0200 (Fri, 07 Jun 2013) New Revision: 668 Added: branches/robast-0.9/pkg/RobExtremesBuffer/BernhardLMScripts.R branches/robast-0.9/pkg/RobExtremesBuffer/GPD-RMXE-Bernhard.pdf branches/robast-0.9/pkg/RobExtremesBuffer/MakeSmoothGridListBe.R branches/robast-0.9/pkg/RobExtremesBuffer/Weibull-RMXE-Bernhard.pdf Log: Smoothed LMs for RMXE-GPD and RMXE-Weibull Added: branches/robast-0.9/pkg/RobExtremesBuffer/BernhardLMScripts.R =================================================================== --- branches/robast-0.9/pkg/RobExtremesBuffer/BernhardLMScripts.R (rev 0) +++ branches/robast-0.9/pkg/RobExtremesBuffer/BernhardLMScripts.R 2013-06-07 13:09:50 UTC (rev 668) @@ -0,0 +1,194 @@ +### preparations: +# (0) R-forge checkout von distr und robast machen; Pakete installieren +###### +# Reihenfolge +#### *: von r-forge, **: von CRAN, ***: von BioConductor +# vorab: +# CRAN: ** sfsmisc, setRNG, fBasics, fGarch, mvtnorm, lattice, RColorBrewer, +# rrcov, evd, actuar +# BioConductor: *** Biobase, affy, beadarray +# +# * RobAStRDA +# * startupmsg +# * SweaveListingUtils +# * distr +# * distrEx +# * distrTeach +# * distrRmetrics +# * distrSim +# * distrEllipse +# * distrTEst +# * RandVar +# * distrMod +# * distrDoc +# * RobAStBase +# * ROptEst +# * RobExtremes +# * RobLox +# * RobLoxBioC +# * ROptEstOld +# * ROptRegTS +# * RobRex +# +## evtl naechste Zeile modifizieren +baseDir0 <- "/home/bernhard/university/svn/r-forge/robast" +interpolDir <- "branches/robast-0.9/pkg/RobExtremes/inst/AddMaterial/interpolation" +interpolFile <- "plotInterpol.R" +## +# (1) Paket laden +require(RobExtremes) +## +## in \branches\robast-0.9\pkg\RobExtremes\inst\AddMaterial\interpolation +## file plotInterpol.R einsourcen +source(file.path(baseDir0,interpolDir, interpolFile)) + +############################################### +### WARNING: new .MakeSmoothGridList()!!! ### +source("MakeSmoothGridListBe.R") +############################################### + + +### .saveGridToRDA und .computeInterpolators aus Namespace holen: +.saveGridToRda <- RobAStRDA:::.saveGridToRda +.computeInterpolators <- RobAStRDA:::.computeInterpolators + +## Risiken auf P+M+B+G+MP+D (jeder 22) +#P OMSE.GEV, OMSE.Gamma +#MP MBRE.GEV, MBRE.Gamma, +#M RMXE.GEV, RMXE.Gamma +#G OMSE.GPD, OMSE.Weibull +#D MBRE.GPD MBRE.Weibull +#B RMXE.GPD RMXE.Weibull + +## in den Plots: schwarz: ungegl?ttet; +## rot: bereits im Gitter vorhandene Gl?ttung; +## gr?n: aktuelle TestGl?ttung + +## Definition von Shortcuts +## Peter: / bei Euch entsprechend erste beide Argumente von myplot2, myplot3, zu ersetzen +myplot2 <- function(whichLM, plotGridRestriction = NULL, + df = NULL, gridRestrForSmooth = NULL, withSmooth=TRUE, ...) + plotLM("RMXE",Famnam="Generalized",whichLM=whichLM, baseDir=baseDir0, withSmooth=withSmooth, + plotGridRestriction=plotGridRestriction, + smoothtry = TRUE, df = df, + gridRestrForSmooth = gridRestrForSmooth, ...) +myplot3 <- function(whichLM, plotGridRestriction = NULL, + df = NULL, gridRestrForSmooth = NULL, withSmooth=TRUE, ...) + plotLM("RMXE",Famnam="Weibull",whichLM=whichLM, baseDir=baseDir0, withSmooth=withSmooth, + plotGridRestriction=plotGridRestriction, + smoothtry = TRUE, df = df, + gridRestrForSmooth = gridRestrForSmooth, ...) + +### folder setzen +oldwd <- getwd() +.basepath <- file.path(baseDir0, "branches/robast-0.9/pkg") +.myFolderFrom <- file.path(.basepath,"RobExtremesBuffer") +### Zwischenspeichern des rda-files +myRDA1 <- file.path(.basepath,"RobExtremesBuffer/sysdata.rda") +### Endort des rda-files +myRDA <- file.path(.basepath,"RobAStRDA/R/sysdata.rda") +CSVFiles <- grep("\\.csv$", dir(.myFolderFrom), value=TRUE) +CSVFiles <- paste(.myFolderFrom, CSVFiles, sep="/") +CSVFiles2 <- file.path(.myFolderFrom,"interpolRMXEGeneralizedParetoFamily.csv") +CSVFiles3 <- file.path(.myFolderFrom,"interpolRMXEWeibullFamily.csv") +file.copy(from=myRDA,to=myRDA1) + +### 1. Runde +### "RMXE"-"GPD" +## df und gridR Werte durch Ausprobieren gewonnen + +#myplot2(1, df = NULL, gridR = NULL) +#myplot2(2, df = NULL, gridR = NULL) +#myplot2(3, df = NULL, gridR = NULL) +#myplot2(4, df = NULL, gridR = NULL) +#myplot2(5, df = NULL, gridR = NULL) +#myplot2(6, df = NULL, gridR = NULL) +#myplot2(7, df = NULL, gridR = NULL) +#myplot2(8, df = NULL, gridR = NULL) +#myplot2(9, df = NULL, gridR = NULL) +#myplot2(10, df = NULL, gridR = NULL) +#myplot2(11, df = NULL, gridR = NULL) +#myplot2(12, df = NULL, gridR = NULL) +#myplot2(13, df = NULL, gridR = NULL) + +myplot2(1) +myplot2(2, gridR=-(106:180), plotG=1:300, withSmooth=FALSE) +myplot2(3, gridR=-(106:180), plotG=1:300, withSmooth=FALSE) +myplot2(4, gridR=-(106:180), plotG=1:300, withSmooth=FALSE) +myplot2(5) +myplot2(6) +myplot2(7) +myplot2(8) +myplot2(9) +myplot2(10) +myplot2(11) +myplot2(12) +myplot2(13) + +### sammeln der gridR und df Werte (ggf in listen) +gridR2 <- list(NULL, -(106:180), -(106:180), -(106:180), NULL, NULL, + NULL, NULL, NULL, NULL, NULL, NULL, + NULL) +dfR2 <- NULL + +### alle Plotten zur Kontrolle +myplot2("all", df=dfR2, gridR=gridR2, withSmooth=FALSE, pre=X11()) + +### schreiben der gegl?tteten Gitter ins rda-file, +## aber zun?chst noch woanders (myRDA1) gespeichert: +.saveGridToRda(CSVFiles2, toFileRDA = myRDA1, withMerge = TRUE, + withPrint = TRUE, withSmooth = TRUE, df = dfR2, + gridRestrForSmooth=gridR2) + +### 2. Runde +### "RMXE"-"Weibull" +## df und gridR Werte durch Ausprobieren gewonnen + +#myplot3(1, df=25, gridR=-c(1:3, 200:670), plotG=3:200) +#myplot3(1, df=12, gridR=-c(1:3, 100:670), plotG=3:200) + +myplot3(1, gridR=-(1:2), plotG=1:200, withSmooth=FALSE) +myplot3(2, df=NULL, gridR=-2, plotG=1:200, withSmooth=FALSE) +myplot3(3, gridR=-(1:2), plotG=1:100, withSmooth=FALSE) +myplot3(4) +myplot3(5, gridR=-(1:2), plotG=1:100, withSmooth=FALSE) +myplot3(6, gridR=-2, plotG=1:100, withSmooth=FALSE) +myplot3(7, gridR=-(1:2), plotG=c(1, 3:100), withSmooth=FALSE) +myplot3(8, gridR=-(1:2), plotG=c(1, 3:100), withSmooth=FALSE) +myplot3(9) +myplot3(10, gridR=-2, plotG=1:100, withSmooth=FALSE) +myplot3(11, gridR=-(1:2), plotG=1:100, withSmooth=FALSE) +myplot3(12, gridR=-(1:2), plotG=1:100, withSmooth=FALSE) +myplot3(13) + +### sammeln der gridR, plotR und df Werte (ggf in listen) +gridR3 <- list(-(1:2), -2, -(1:2), NULL, -(1:2), -2, + -(1:2),-(1:2), NULL, -2, -(1:2), -(1:2), + NULL) +dfR3 <- NULL +### alle Plotten zur Kontrolle +myplot3("all", df=dfR3, gridR=gridR3, withSmooth=FALSE, pre=X11()) +### schreiben der gegl?tteten Gitter ins rda-file, +## aber zun?chst noch woanders (myRDA1) gespeichert: +.saveGridToRda(CSVFiles3, toFileRDA = myRDA1, withMerge = TRUE, + withPrint = TRUE, withSmooth = TRUE, df = dfR3, + gridRestrForSmooth=gridR3) + +if(getRversion()>"2.16"){ +### generierung der Interpolatoren (in R>3.0) +.computeInterpolators(myRDA1, myRDA,withSmoothFct = TRUE) +} +######################################---bis hierher mit R-3.0.0 laufen lassen ## + +######################################---ab hier mit R-2.15.2 laufen lassen ## +if(getRversion()<"2.16"){ +### generierung der Interpolatoren (in R<=2.15) +## folgenden Code einsourcen: +### change adequately: +.baseDir.loc <- "C:/rtest/RobASt" +.basepath <- file.path(.baseDir.loc,"branches/robast-0.9/pkg") +myRDA <- file.path(.basepath,"RobAStRDA/R/sysdata.rda") +require(RobAStRDA) +RobAStRDA:::.computeInterpolators(myRDA, myRDA,withSmoothFct = TRUE) +} + Added: branches/robast-0.9/pkg/RobExtremesBuffer/GPD-RMXE-Bernhard.pdf =================================================================== --- branches/robast-0.9/pkg/RobExtremesBuffer/GPD-RMXE-Bernhard.pdf (rev 0) +++ branches/robast-0.9/pkg/RobExtremesBuffer/GPD-RMXE-Bernhard.pdf 2013-06-07 13:09:50 UTC (rev 668) @@ -0,0 +1,431 @@ +%PDF-1.4 +%????????\r +1 0 obj +<< +/CreationDate (D:20130607145450) +/ModDate (D:20130607145450) +/Title (R Graphics Output) +/Producer (R 2.15.1) +/Creator (R) +>> +endobj +2 0 obj +<< /Type /Catalog /Pages 3 0 R >> +endobj +7 0 obj +<< /Type /Page /Parent 3 0 R /Contents 8 0 R /Resources 4 0 R >> +endobj +8 0 obj +<< +/Length 67743 /Filter /FlateDecode +>> +stream +x?????$?y?;???!9`+3?1?! ? +?R6 h?-??%?4L???~W?ZOdV????v????????q>~??E???^(??~?????c????????w?1e?o?vI[?????O?O/?????f?? ?????C???,?m ????!k~?9dym?V??|???~-?T??e{?Y????m??g??6????'?TF????????b>?%O???r??w???{?; +!???ZQ??/a~??b?/l??aSUmw???ym???v????]b????[??????$c???W???o??????W5??????V ???k??????9???????/>????|??_??O?^>???'_?????????}??????????W???{???6?k? +o??Ju?l??Z?tu#]??Y:?.???P_?_??u4?)???s?M9??{? +?{??t??lTG?lT'??f?w?s???Q???(?:{??????r???d?,?A????i??(?0?????????%??[????%?????'4}????????H*W?????n??????+ +?3?)?e????? ??]??{?????d?Ne??|????G'T\????_?????sSB?????c??s`??h7??Q$?z???F???&???C??????N????P?7???,??? ?t#??.Z???:;?u???`?h6???n??2HV??*???IE7???????0????????8??53?U???????U?y???YM??+????~?"?jM-??c?v?Cf??P???U??[???v???=P]E\?}N"C?????????"?*??R +?9???E??G??????29??l*??*+??.h?-??c??P6?*ASj?T>d??A??ldr???0???M?s?+?F????hv>?]y??Q?t??6q????r??4????u??C?~?u???????A??U?L?WW9?f9?????rV?U?j?"9&??;?????0r?cl?Au?u??*??eU&g??????Q??? 9?J$L?jf]?+???TVQ?d?GqC?Nw?YQ??Uj????S?.I]?d???+7g??"p\?1?f??tm?t70?lW^?v]d??? ??vSL????9????*9????!=?=gM@=??|?kQ4d?+???#?Z?d?`tA???JN0k????sq????>???Ou?>e +S????I3?`??@C?m?U???'??7'?F|'??N|??/????C???bp??N|?X/7pb??Ppb?|????? ? +~?h?? 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[TRUNCATED] To get the complete diff run: svnlook diff /svnroot/robast -r 668 From noreply at r-forge.r-project.org Mon Jun 17 12:32:25 2013 From: noreply at r-forge.r-project.org (noreply at r-forge.r-project.org) Date: Mon, 17 Jun 2013 12:32:25 +0200 (CEST) Subject: [Robast-commits] r669 - branches/robast-0.9/pkg/RobAStRDA/R Message-ID: <20130617103225.A2674184B61@r-forge.r-project.org> Author: ruckdeschel Date: 2013-06-17 12:32:24 +0200 (Mon, 17 Jun 2013) New Revision: 669 Modified: branches/robast-0.9/pkg/RobAStRDA/R/sysdata.rda Log: inserted Bernhard's smoothers Modified: branches/robast-0.9/pkg/RobAStRDA/R/sysdata.rda =================================================================== (Binary files differ)