[Robast-commits] r596 - branches/robast-0.9/pkg/RobLoxBioC/tests/Examples

[noreply at r-forge.r-project.org]

Author: stamats
Date: 2013-02-08 19:43:54 +0100 (Fri, 08 Feb 2013)
New Revision: 596

Modified:
   branches/robast-0.9/pkg/RobLoxBioC/tests/Examples/RobLoxBioC-Ex.Rout.save
Log:
update of Rout.save

Modified: branches/robast-0.9/pkg/RobLoxBioC/tests/Examples/RobLoxBioC-Ex.Rout.save
===================================================================
--- branches/robast-0.9/pkg/RobLoxBioC/tests/Examples/RobLoxBioC-Ex.Rout.save	2013-02-08 15:32:56 UTC (rev 595)
+++ branches/robast-0.9/pkg/RobLoxBioC/tests/Examples/RobLoxBioC-Ex.Rout.save	2013-02-08 18:43:54 UTC (rev 596)
@@ -1,5 +1,5 @@
 
-R Under development (unstable) (2013-01-26 r61749) -- "Unsuffered Consequences"
+R Under development (unstable) (2013-02-06 r61845) -- "Unsuffered Consequences"
 Copyright (C) 2013 The R Foundation for Statistical Computing
 ISBN 3-900051-07-0
 Platform: x86_64-unknown-linux-gnu (64-bit)
@@ -225,10 +225,10 @@
     clip
 
 > 
-> assign(".oldSearch", search(), pos = 'CheckExEnv')
-> assign(".ExTimings", "RobLoxBioC-Ex.timings", pos = 'CheckExEnv')
-> cat("name\tuser\tsystem\telapsed\n", file=get(".ExTimings", pos = 'CheckExEnv'))
-> assign(".format_ptime",
+> base::assign(".oldSearch", base::search(), pos = 'CheckExEnv')
+> base::assign(".ExTimings", "RobLoxBioC-Ex.timings", pos = 'CheckExEnv')
+> base::cat("name\tuser\tsystem\telapsed\n", file=base::get(".ExTimings", pos = 'CheckExEnv'))
+> base::assign(".format_ptime",
 + function(x) {
 +   if(!is.na(x[4L])) x[1L] <- x[1L] + x[4L]
 +   if(!is.na(x[5L])) x[2L] <- x[2L] + x[5L]
@@ -242,7 +242,7 @@
 > 
 > flush(stderr()); flush(stdout())
 > 
-> assign(".ptime", proc.time(), pos = "CheckExEnv")
+> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
 > ### Name: RobLoxBioC-package
 > ### Title: Infinitesimally robust estimators for preprocessing omics data
 > ### Aliases: RobLoxBioC-package RobLoxBioC
@@ -255,15 +255,15 @@
 > 
 > 
 > 
-> assign(".dptime", (proc.time() - get(".ptime", pos = "CheckExEnv")), pos = "CheckExEnv")
-> cat("0RobLoxBioC-package", get(".format_ptime", pos = 'CheckExEnv')(get(".dptime", pos = "CheckExEnv")), "\n", file=get(".ExTimings", pos = 'CheckExEnv'), append=TRUE, sep="\t")
+> base::assign(".dptime", (proc.time() - get(".ptime", pos = "CheckExEnv")), pos = "CheckExEnv")
+> base::cat("0RobLoxBioC-package", base::get(".format_ptime", pos = 'CheckExEnv')(get(".dptime", pos = "CheckExEnv")), "\n", file=base::get(".ExTimings", pos = 'CheckExEnv'), append=TRUE, sep="\t")
 > cleanEx()
 > nameEx("KolmogorovMinDist")
 > ### * KolmogorovMinDist
 > 
 > flush(stderr()); flush(stdout())
 > 
-> assign(".ptime", proc.time(), pos = "CheckExEnv")
+> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
 > ### Name: KolmogorovMinDist
 > ### Title: Generic Function for Computing Minimum Kolmogorov Distance for
 > ###   Biological Data
@@ -337,15 +337,15 @@
 > 
 > 
 > 
-> assign(".dptime", (proc.time() - get(".ptime", pos = "CheckExEnv")), pos = "CheckExEnv")
-> cat("KolmogorovMinDist", get(".format_ptime", pos = 'CheckExEnv')(get(".dptime", pos = "CheckExEnv")), "\n", file=get(".ExTimings", pos = 'CheckExEnv'), append=TRUE, sep="\t")
+> base::assign(".dptime", (proc.time() - get(".ptime", pos = "CheckExEnv")), pos = "CheckExEnv")
+> base::cat("KolmogorovMinDist", base::get(".format_ptime", pos = 'CheckExEnv')(get(".dptime", pos = "CheckExEnv")), "\n", file=base::get(".ExTimings", pos = 'CheckExEnv'), append=TRUE, sep="\t")
 > cleanEx()
 > nameEx("SimStudies")
 > ### * SimStudies
 > 
 > flush(stderr()); flush(stdout())
 > 
-> assign(".ptime", proc.time(), pos = "CheckExEnv")
+> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
 > ### Name: SimStudies
 > ### Title: Perform Monte-Carlo Study.
 > ### Aliases: AffySimStudy IlluminaSimStudy
@@ -380,15 +380,15 @@
 > 
 > 
 > 
-> assign(".dptime", (proc.time() - get(".ptime", pos = "CheckExEnv")), pos = "CheckExEnv")
-> cat("SimStudies", get(".format_ptime", pos = 'CheckExEnv')(get(".dptime", pos = "CheckExEnv")), "\n", file=get(".ExTimings", pos = 'CheckExEnv'), append=TRUE, sep="\t")
+> base::assign(".dptime", (proc.time() - get(".ptime", pos = "CheckExEnv")), pos = "CheckExEnv")
+> base::cat("SimStudies", base::get(".format_ptime", pos = 'CheckExEnv')(get(".dptime", pos = "CheckExEnv")), "\n", file=base::get(".ExTimings", pos = 'CheckExEnv'), append=TRUE, sep="\t")
 > cleanEx()
 > nameEx("robloxbioc")
 > ### * robloxbioc
 > 
 > flush(stderr()); flush(stdout())
 > 
-> assign(".ptime", proc.time(), pos = "CheckExEnv")
+> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
 > ### Name: robloxbioc
 > ### Title: Generic Function for Preprocessing Biological Data
 > ### Aliases: robloxbioc robloxbioc-methods robloxbioc,matrix-method
@@ -454,12 +454,12 @@
 > 
 > 
 > 
-> assign(".dptime", (proc.time() - get(".ptime", pos = "CheckExEnv")), pos = "CheckExEnv")
-> cat("robloxbioc", get(".format_ptime", pos = 'CheckExEnv')(get(".dptime", pos = "CheckExEnv")), "\n", file=get(".ExTimings", pos = 'CheckExEnv'), append=TRUE, sep="\t")
+> base::assign(".dptime", (proc.time() - get(".ptime", pos = "CheckExEnv")), pos = "CheckExEnv")
+> base::cat("robloxbioc", base::get(".format_ptime", pos = 'CheckExEnv')(get(".dptime", pos = "CheckExEnv")), "\n", file=base::get(".ExTimings", pos = 'CheckExEnv'), append=TRUE, sep="\t")
 > ### * <FOOTER>
 > ###
-> cat("Time elapsed: ", proc.time() - get("ptime", pos = 'CheckExEnv'),"\n")
-Time elapsed:  11.344 0.136 11.628 0 0 
+> base::cat("Time elapsed: ", proc.time() - base::get("ptime", pos = 'CheckExEnv'),"\n")
+Time elapsed:  12.136 0.156 12.385 0 0 
 > grDevices::dev.off()
 pdf 
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