From renaud at mancala.cbio.uct.ac.za  Mon Jun  1 12:06:28 2015
From: renaud at mancala.cbio.uct.ac.za (Renaud Gaujoux)
Date: Mon, 1 Jun 2015 12:06:28 +0200
Subject: [Rcppoctave-user] Cannot install rcppoctave
In-Reply-To: <BAY174-W264270B1FD7449A2DE5C4C97C80@phx.gbl>
References: <BAY174-W81A49CD0C4E766B9A9B3897DE0@phx.gbl>
 <CAHavPHEv1fuvye+sjMoTjdkJHwFY_V2pJgFVx=zmPBj26o2wBQ@mail.gmail.com>
 <BAY174-W1BC0AE0189EA7EDB7813B97D90@phx.gbl>
 <BAY174-W264270B1FD7449A2DE5C4C97C80@phx.gbl>
Message-ID: <CAHavPHGPkPxn1iXFEe+ReTuqcxiYMD+VUeVVssDye_EgY-6tBw@mail.gmail.com>

Did you compile and install Octave locally?

On 30 May 2015 at 12:20, kam kammon <kammon101 at hotmail.ca> wrote:

> Hi,
>
> RcppOctave no longer works for Octave 4.0.0 which was just released.
> Tried reinstall (from develop branch) and got the errors
>
> Error :
> /tmp/Rtmpk5fzV0/devtools441847599d4d/renozao-RcppOctave-44ada3d/man/o_addpath.Rd:40:
> .onLoad failed in loadNamespace() for 'RcppOctave', details:
>   call: FUN(X[[i]], ...)
>   error: RcppOctave - error in Octave function `octave_config_info`:
>   octave_config_info: invalid parameter 'CC_VERSION'
>
> ERROR: installing Rd objects failed for package ?RcppOctave?
> * removing ?/usr/lib/R/library/RcppOctave?
> Warning: namespace ?RcppOctave? is not available and has been replaced
> by .GlobalEnv when processing object ??
> Error: Command failed (1)
>
> Thanks.
>
> ------------------------------
> From: kammon101 at hotmail.ca
> To: renaud at mancala.cbio.uct.ac.za
> Date: Wed, 13 May 2015 18:39:51 -0400
> CC: rcppoctave-user at lists.r-forge.r-project.org
>
> Subject: Re: [Rcppoctave-user] Cannot install rcppoctave
>
> Hi,
>
> I installed the development version in R with the command
>
> devtools::install_github('renozao/RcppOctave', ref = 'develop')
>
> I suppose it is the develop branch since the master of github apparently
> hasn't been updated for a year
> https://github.com/renozao/RcppOctave
>
> Thanks.
>
>
>
> ------------------------------
> Date: Wed, 13 May 2015 11:42:21 +0200
> Subject: Re: [Rcppoctave-user] Cannot install rcppoctave
> From: renaud at mancala.cbio.uct.ac.za
> To: kammon101 at hotmail.ca
> CC: rcppoctave-user at lists.r-forge.r-project.org
>
> Hi,
>
> yes I need to push out a release of the development version.
> From which github branch did you install: master or develop?
>
> Thanks.
>
> Renaud
>
> On 8 May 2015 at 06:14, kam kammon <kammon101 at hotmail.ca> wrote:
>
> Hi,
>
> I have having the same errors installing RcppOctave as reported back in
> Nov 11 2014.
>
> Ran install.packages('RcppOctave') in R and got
>
> "Error :
> /tmp/RtmpV72mPb/R.INSTALL8bb4108467/RcppOctave/man/o_addpath.Rd:40: .onLoad
> failed in loadNamespace() for 'RcppOctave', details:
>   call: lapply(X = X, FUN = FUN, ...)
>   error: object 'dlibs' not found" "
>
> The development version for RcppOctave installed without a problem.
>
> This time R version is 3.2.0 on a clean install of Ubuntu 15.04 64 bits.
> Octave version is 3.8.2 but this time is complied with  the ./configure
> options --with-hdf5-includedir=/usr/include/hdf5/serial
> --with-hdf5-libdir=/usr/lib/x86_64-linux-gnu/hdf5/serial
>
> Ubuntu 15.04  now allows installing both the serial and openmpi versions
> for hdf5 they are installed in the subdirectories .../hdf5/serial and
> ../hdf5/openmpi respectively. Octave seems to have a problem picking up
> hdf5 in the openmpi subdirectory so  I used the serial version.
>
> Thanks.
>
> _______________________________________________
> Rcppoctave-user mailing list
> Rcppoctave-user at lists.r-forge.r-project.org
> http://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/rcppoctave-user
>
>
>
> _______________________________________________ Rcppoctave-user mailing
> list Rcppoctave-user at lists.r-forge.r-project.org
> http://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/rcppoctave-user
>
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From renaud at mancala.cbio.uct.ac.za  Mon Jun  1 12:30:47 2015
From: renaud at mancala.cbio.uct.ac.za (Renaud Gaujoux)
Date: Mon, 1 Jun 2015 12:30:47 +0200
Subject: [Rcppoctave-user] Cannot install rcppoctave
In-Reply-To: <BAY174-W264270B1FD7449A2DE5C4C97C80@phx.gbl>
References: <BAY174-W81A49CD0C4E766B9A9B3897DE0@phx.gbl>
 <CAHavPHEv1fuvye+sjMoTjdkJHwFY_V2pJgFVx=zmPBj26o2wBQ@mail.gmail.com>
 <BAY174-W1BC0AE0189EA7EDB7813B97D90@phx.gbl>
 <BAY174-W264270B1FD7449A2DE5C4C97C80@phx.gbl>
Message-ID: <CAHavPHFGFDzdei7GFxxntRcU34FamRbX8urFmC9sxPLB8tTt_w@mail.gmail.com>

Ok, that's a compatiblity bug.
Looking for CC_VERSION in in
http://www.gnu.org/software/octave/NEWS-4.0.html tells us that the config
variable changed name.
I have a fix for this now.
Can you please open an issue on GitHub:
https://github.com/renozao/RcppOctave/issues

Thanks

On 30 May 2015 at 12:20, kam kammon <kammon101 at hotmail.ca> wrote:

> Hi,
>
> RcppOctave no longer works for Octave 4.0.0 which was just released.
> Tried reinstall (from develop branch) and got the errors
>
> Error :
> /tmp/Rtmpk5fzV0/devtools441847599d4d/renozao-RcppOctave-44ada3d/man/o_addpath.Rd:40:
> .onLoad failed in loadNamespace() for 'RcppOctave', details:
>   call: FUN(X[[i]], ...)
>   error: RcppOctave - error in Octave function `octave_config_info`:
>   octave_config_info: invalid parameter 'CC_VERSION'
>
> ERROR: installing Rd objects failed for package ?RcppOctave?
> * removing ?/usr/lib/R/library/RcppOctave?
> Warning: namespace ?RcppOctave? is not available and has been replaced
> by .GlobalEnv when processing object ??
> Error: Command failed (1)
>
> Thanks.
>
> ------------------------------
> From: kammon101 at hotmail.ca
> To: renaud at mancala.cbio.uct.ac.za
> Date: Wed, 13 May 2015 18:39:51 -0400
> CC: rcppoctave-user at lists.r-forge.r-project.org
>
> Subject: Re: [Rcppoctave-user] Cannot install rcppoctave
>
> Hi,
>
> I installed the development version in R with the command
>
> devtools::install_github('renozao/RcppOctave', ref = 'develop')
>
> I suppose it is the develop branch since the master of github apparently
> hasn't been updated for a year
> https://github.com/renozao/RcppOctave
>
> Thanks.
>
>
>
> ------------------------------
> Date: Wed, 13 May 2015 11:42:21 +0200
> Subject: Re: [Rcppoctave-user] Cannot install rcppoctave
> From: renaud at mancala.cbio.uct.ac.za
> To: kammon101 at hotmail.ca
> CC: rcppoctave-user at lists.r-forge.r-project.org
>
> Hi,
>
> yes I need to push out a release of the development version.
> From which github branch did you install: master or develop?
>
> Thanks.
>
> Renaud
>
> On 8 May 2015 at 06:14, kam kammon <kammon101 at hotmail.ca> wrote:
>
> Hi,
>
> I have having the same errors installing RcppOctave as reported back in
> Nov 11 2014.
>
> Ran install.packages('RcppOctave') in R and got
>
> "Error :
> /tmp/RtmpV72mPb/R.INSTALL8bb4108467/RcppOctave/man/o_addpath.Rd:40: .onLoad
> failed in loadNamespace() for 'RcppOctave', details:
>   call: lapply(X = X, FUN = FUN, ...)
>   error: object 'dlibs' not found" "
>
> The development version for RcppOctave installed without a problem.
>
> This time R version is 3.2.0 on a clean install of Ubuntu 15.04 64 bits.
> Octave version is 3.8.2 but this time is complied with  the ./configure
> options --with-hdf5-includedir=/usr/include/hdf5/serial
> --with-hdf5-libdir=/usr/lib/x86_64-linux-gnu/hdf5/serial
>
> Ubuntu 15.04  now allows installing both the serial and openmpi versions
> for hdf5 they are installed in the subdirectories .../hdf5/serial and
> ../hdf5/openmpi respectively. Octave seems to have a problem picking up
> hdf5 in the openmpi subdirectory so  I used the serial version.
>
> Thanks.
>
> _______________________________________________
> Rcppoctave-user mailing list
> Rcppoctave-user at lists.r-forge.r-project.org
> http://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/rcppoctave-user
>
>
>
> _______________________________________________ Rcppoctave-user mailing
> list Rcppoctave-user at lists.r-forge.r-project.org
> http://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/rcppoctave-user
>
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From kammon101 at hotmail.ca  Wed Jun  3 15:18:21 2015
From: kammon101 at hotmail.ca (kam kammon)
Date: Wed, 3 Jun 2015 09:18:21 -0400
Subject: [Rcppoctave-user] Cannot install rcppoctave
In-Reply-To: <CAHavPHGPkPxn1iXFEe+ReTuqcxiYMD+VUeVVssDye_EgY-6tBw@mail.gmail.com>
References: <BAY174-W81A49CD0C4E766B9A9B3897DE0@phx.gbl>,
 <CAHavPHEv1fuvye+sjMoTjdkJHwFY_V2pJgFVx=zmPBj26o2wBQ@mail.gmail.com>,
 <BAY174-W1BC0AE0189EA7EDB7813B97D90@phx.gbl>,
 <BAY174-W264270B1FD7449A2DE5C4C97C80@phx.gbl>,
 <CAHavPHGPkPxn1iXFEe+ReTuqcxiYMD+VUeVVssDye_EgY-6tBw@mail.gmail.com>
Message-ID: <BAY174-W4786CD2FCA59CCD8C712E097B40@phx.gbl>

I compiled it and installed it to /usr/local just as I did with Octave 3.8.2 .

Date: Mon, 1 Jun 2015 12:06:28 +0200
Subject: Re: [Rcppoctave-user] Cannot install rcppoctave
From: renaud at mancala.cbio.uct.ac.za
To: kammon101 at hotmail.ca
CC: rcppoctave-user at lists.r-forge.r-project.org

Did you compile and install Octave locally?
On 30 May 2015 at 12:20, kam kammon <kammon101 at hotmail.ca> wrote:



Hi, 

RcppOctave no longer works for Octave 4.0.0 which was just released.
Tried reinstall (from develop branch) and got the errors

Error : /tmp/Rtmpk5fzV0/devtools441847599d4d/renozao-RcppOctave-44ada3d/man/o_addpath.Rd:40: .onLoad failed in loadNamespace() for 'RcppOctave', details:
  call: FUN(X[[i]], ...)
  error: RcppOctave - error in Octave function `octave_config_info`:
  octave_config_info: invalid parameter 'CC_VERSION'

ERROR: installing Rd objects failed for package ?RcppOctave?
* removing ?/usr/lib/R/library/RcppOctave?
Warning: namespace ?RcppOctave? is not available and has been replaced
by .GlobalEnv when processing object ??
Error: Command failed (1)

Thanks.

From: kammon101 at hotmail.ca
To: renaud at mancala.cbio.uct.ac.za
Date: Wed, 13 May 2015 18:39:51 -0400
CC: rcppoctave-user at lists.r-forge.r-project.org
Subject: Re: [Rcppoctave-user] Cannot install rcppoctave




Hi, 

I installed the development version in R with the command 

devtools::install_github('renozao/RcppOctave', ref = 'develop')

I suppose it is the develop branch since the master of github apparently hasn't been updated for a year
https://github.com/renozao/RcppOctave

Thanks.


Date: Wed, 13 May 2015 11:42:21 +0200
Subject: Re: [Rcppoctave-user] Cannot install rcppoctave
From: renaud at mancala.cbio.uct.ac.za
To: kammon101 at hotmail.ca
CC: rcppoctave-user at lists.r-forge.r-project.org

Hi,
yes I need to push out a release of the development version.From which github branch did you install: master or develop?
Thanks.
Renaud
On 8 May 2015 at 06:14, kam kammon <kammon101 at hotmail.ca> wrote:



Hi, 

I have having the same errors installing RcppOctave as reported back in Nov 11 2014.

Ran install.packages('RcppOctave') in R and got 

"Error : /tmp/RtmpV72mPb/R.INSTALL8bb4108467/RcppOctave/man/o_addpath.Rd:40: .onLoad failed in loadNamespace() for 'RcppOctave', details:
  call: lapply(X = X, FUN = FUN, ...)
  error: object 'dlibs' not found" "

The development version for RcppOctave installed without a problem.

This time R version is 3.2.0 on a clean install of Ubuntu 15.04 64 bits. Octave version is 3.8.2 but this time is complied with  the ./configure options --with-hdf5-includedir=/usr/include/hdf5/serial --with-hdf5-libdir=/usr/lib/x86_64-linux-gnu/hdf5/serial 

Ubuntu 15.04  now allows installing both the serial and openmpi versions for hdf5 they are installed in the subdirectories .../hdf5/serial and ../hdf5/openmpi respectively. Octave seems to have a problem picking up  hdf5 in the openmpi subdirectory so  I used the serial version.

Thanks.
 		 	   		  

_______________________________________________

Rcppoctave-user mailing list

Rcppoctave-user at lists.r-forge.r-project.org

http://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/rcppoctave-user



 		 	   		  

_______________________________________________
Rcppoctave-user mailing list
Rcppoctave-user at lists.r-forge.r-project.org
http://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/rcppoctave-user 		 	   		  

 		 	   		  
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From kammon101 at hotmail.ca  Wed Jun  3 15:26:34 2015
From: kammon101 at hotmail.ca (kam kammon)
Date: Wed, 3 Jun 2015 09:26:34 -0400
Subject: [Rcppoctave-user] Cannot install rcppoctave
In-Reply-To: <CAHavPHFGFDzdei7GFxxntRcU34FamRbX8urFmC9sxPLB8tTt_w@mail.gmail.com>
References: <BAY174-W81A49CD0C4E766B9A9B3897DE0@phx.gbl>,
 <CAHavPHEv1fuvye+sjMoTjdkJHwFY_V2pJgFVx=zmPBj26o2wBQ@mail.gmail.com>,
 <BAY174-W1BC0AE0189EA7EDB7813B97D90@phx.gbl>,
 <BAY174-W264270B1FD7449A2DE5C4C97C80@phx.gbl>,
 <CAHavPHFGFDzdei7GFxxntRcU34FamRbX8urFmC9sxPLB8tTt_w@mail.gmail.com>
Message-ID: <BAY174-W384A7115F2470F6781642897B40@phx.gbl>

Thanks, just opened an issue at github.

Date: Mon, 1 Jun 2015 12:30:47 +0200
Subject: Re: [Rcppoctave-user] Cannot install rcppoctave
From: renaud at mancala.cbio.uct.ac.za
To: kammon101 at hotmail.ca
CC: rcppoctave-user at lists.r-forge.r-project.org

Ok, that's a compatiblity bug.Looking for CC_VERSION in in http://www.gnu.org/software/octave/NEWS-4.0.html tells us that the config variable changed name.I have a fix for this now.Can you please open an issue on GitHub: https://github.com/renozao/RcppOctave/issues
Thanks
On 30 May 2015 at 12:20, kam kammon <kammon101 at hotmail.ca> wrote:



Hi, 

RcppOctave no longer works for Octave 4.0.0 which was just released.
Tried reinstall (from develop branch) and got the errors

Error : /tmp/Rtmpk5fzV0/devtools441847599d4d/renozao-RcppOctave-44ada3d/man/o_addpath.Rd:40: .onLoad failed in loadNamespace() for 'RcppOctave', details:
  call: FUN(X[[i]], ...)
  error: RcppOctave - error in Octave function `octave_config_info`:
  octave_config_info: invalid parameter 'CC_VERSION'

ERROR: installing Rd objects failed for package ?RcppOctave?
* removing ?/usr/lib/R/library/RcppOctave?
Warning: namespace ?RcppOctave? is not available and has been replaced
by .GlobalEnv when processing object ??
Error: Command failed (1)

Thanks.

From: kammon101 at hotmail.ca
To: renaud at mancala.cbio.uct.ac.za
Date: Wed, 13 May 2015 18:39:51 -0400
CC: rcppoctave-user at lists.r-forge.r-project.org
Subject: Re: [Rcppoctave-user] Cannot install rcppoctave




Hi, 

I installed the development version in R with the command 

devtools::install_github('renozao/RcppOctave', ref = 'develop')

I suppose it is the develop branch since the master of github apparently hasn't been updated for a year
https://github.com/renozao/RcppOctave

Thanks.


Date: Wed, 13 May 2015 11:42:21 +0200
Subject: Re: [Rcppoctave-user] Cannot install rcppoctave
From: renaud at mancala.cbio.uct.ac.za
To: kammon101 at hotmail.ca
CC: rcppoctave-user at lists.r-forge.r-project.org

Hi,
yes I need to push out a release of the development version.From which github branch did you install: master or develop?
Thanks.
Renaud
On 8 May 2015 at 06:14, kam kammon <kammon101 at hotmail.ca> wrote:



Hi, 

I have having the same errors installing RcppOctave as reported back in Nov 11 2014.

Ran install.packages('RcppOctave') in R and got 

"Error : /tmp/RtmpV72mPb/R.INSTALL8bb4108467/RcppOctave/man/o_addpath.Rd:40: .onLoad failed in loadNamespace() for 'RcppOctave', details:
  call: lapply(X = X, FUN = FUN, ...)
  error: object 'dlibs' not found" "

The development version for RcppOctave installed without a problem.

This time R version is 3.2.0 on a clean install of Ubuntu 15.04 64 bits. Octave version is 3.8.2 but this time is complied with  the ./configure options --with-hdf5-includedir=/usr/include/hdf5/serial --with-hdf5-libdir=/usr/lib/x86_64-linux-gnu/hdf5/serial 

Ubuntu 15.04  now allows installing both the serial and openmpi versions for hdf5 they are installed in the subdirectories .../hdf5/serial and ../hdf5/openmpi respectively. Octave seems to have a problem picking up  hdf5 in the openmpi subdirectory so  I used the serial version.

Thanks.
 		 	   		  

_______________________________________________

Rcppoctave-user mailing list

Rcppoctave-user at lists.r-forge.r-project.org

http://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/rcppoctave-user



 		 	   		  

_______________________________________________
Rcppoctave-user mailing list
Rcppoctave-user at lists.r-forge.r-project.org
http://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/rcppoctave-user 		 	   		  

 		 	   		  
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From edd at debian.org  Wed Jun  3 16:09:58 2015
From: edd at debian.org (Dirk Eddelbuettel)
Date: Wed, 3 Jun 2015 09:09:58 -0500
Subject: [Rcppoctave-user] Cannot install rcppoctave
In-Reply-To: <BAY174-W384A7115F2470F6781642897B40@phx.gbl>
References: <BAY174-W81A49CD0C4E766B9A9B3897DE0@phx.gbl>
 <CAHavPHEv1fuvye+sjMoTjdkJHwFY_V2pJgFVx=zmPBj26o2wBQ@mail.gmail.com>
 <BAY174-W1BC0AE0189EA7EDB7813B97D90@phx.gbl>
 <BAY174-W264270B1FD7449A2DE5C4C97C80@phx.gbl>
 <CAHavPHFGFDzdei7GFxxntRcU34FamRbX8urFmC9sxPLB8tTt_w@mail.gmail.com>
 <BAY174-W384A7115F2470F6781642897B40@phx.gbl>
Message-ID: <21871.2742.306739.655881@max.nulle.part>


On 3 June 2015 at 09:26, kam kammon wrote:
| Thanks, just opened an issue at github.

Could you consider working on a pull request addressing the issue?

Dirk

-- 
http://dirk.eddelbuettel.com | @eddelbuettel | edd at debian.org

From renaud at mancala.cbio.uct.ac.za  Wed Jun  3 21:52:01 2015
From: renaud at mancala.cbio.uct.ac.za (Renaud Gaujoux)
Date: Wed, 3 Jun 2015 21:52:01 +0200
Subject: [Rcppoctave-user] Cannot install rcppoctave
In-Reply-To: <21871.2742.306739.655881@max.nulle.part>
References: <BAY174-W81A49CD0C4E766B9A9B3897DE0@phx.gbl>
 <CAHavPHEv1fuvye+sjMoTjdkJHwFY_V2pJgFVx=zmPBj26o2wBQ@mail.gmail.com>
 <BAY174-W1BC0AE0189EA7EDB7813B97D90@phx.gbl>
 <BAY174-W264270B1FD7449A2DE5C4C97C80@phx.gbl>
 <CAHavPHFGFDzdei7GFxxntRcU34FamRbX8urFmC9sxPLB8tTt_w@mail.gmail.com>
 <BAY174-W384A7115F2470F6781642897B40@phx.gbl>
 <21871.2742.306739.655881@max.nulle.part>
Message-ID: <CAHavPHFPYb6f5+5PWnvLRzFQvw0MLZPQgitRHuh-7SYQRMD6zQ@mail.gmail.com>

I have fix for this  ready to be pushed. Will do tomorrow.

On Wednesday, June 3, 2015, Dirk Eddelbuettel <edd at debian.org> wrote:

>
> On 3 June 2015 at 09:26, kam kammon wrote:
> | Thanks, just opened an issue at github.
>
> Could you consider working on a pull request addressing the issue?
>
> Dirk
>
> --
> http://dirk.eddelbuettel.com | @eddelbuettel | edd at debian.org
> <javascript:;>
>
>
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From kammon101 at hotmail.ca  Thu Jun  4 22:34:55 2015
From: kammon101 at hotmail.ca (kam kammon)
Date: Thu, 4 Jun 2015 16:34:55 -0400
Subject: [Rcppoctave-user] Cannot install rcppoctave
In-Reply-To: <CAHavPHFPYb6f5+5PWnvLRzFQvw0MLZPQgitRHuh-7SYQRMD6zQ@mail.gmail.com>
References: <BAY174-W81A49CD0C4E766B9A9B3897DE0@phx.gbl>,
 <CAHavPHEv1fuvye+sjMoTjdkJHwFY_V2pJgFVx=zmPBj26o2wBQ@mail.gmail.com>,
 <BAY174-W1BC0AE0189EA7EDB7813B97D90@phx.gbl>,
 <BAY174-W264270B1FD7449A2DE5C4C97C80@phx.gbl>,
 <CAHavPHFGFDzdei7GFxxntRcU34FamRbX8urFmC9sxPLB8tTt_w@mail.gmail.com>,
 <BAY174-W384A7115F2470F6781642897B40@phx.gbl>,
 <21871.2742.306739.655881@max.nulle.part>,
 <CAHavPHFPYb6f5+5PWnvLRzFQvw0MLZPQgitRHuh-7SYQRMD6zQ@mail.gmail.com>
Message-ID: <BAY174-W4107813CECD45051FDC0D397B30@phx.gbl>

Thanks, let us know when it is ready.

Cheers.
Date: Wed, 3 Jun 2015 21:52:01 +0200
Subject: Re: [Rcppoctave-user] Cannot install rcppoctave
From: renaud at mancala.cbio.uct.ac.za
To: edd at debian.org
CC: kammon101 at hotmail.ca; renaud at mancala.cbio.uct.ac.za; rcppoctave-user at lists.r-forge.r-project.org

I have fix for this  ready to be pushed. Will do tomorrow.

On Wednesday, June 3, 2015, Dirk Eddelbuettel <edd at debian.org> wrote:


On 3 June 2015 at 09:26, kam kammon wrote:

| Thanks, just opened an issue at github.



Could you consider working on a pull request addressing the issue?



Dirk



--

http://dirk.eddelbuettel.com | @eddelbuettel | edd at debian.org



 		 	   		  
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From kammon101 at hotmail.ca  Fri Jun  5 03:56:49 2015
From: kammon101 at hotmail.ca (kam kammon)
Date: Thu, 4 Jun 2015 21:56:49 -0400
Subject: [Rcppoctave-user] Cannot install rcppoctave
In-Reply-To: <CAHavPHFPYb6f5+5PWnvLRzFQvw0MLZPQgitRHuh-7SYQRMD6zQ@mail.gmail.com>
References: <BAY174-W81A49CD0C4E766B9A9B3897DE0@phx.gbl>,
 <CAHavPHEv1fuvye+sjMoTjdkJHwFY_V2pJgFVx=zmPBj26o2wBQ@mail.gmail.com>,
 <BAY174-W1BC0AE0189EA7EDB7813B97D90@phx.gbl>,
 <BAY174-W264270B1FD7449A2DE5C4C97C80@phx.gbl>,
 <CAHavPHFGFDzdei7GFxxntRcU34FamRbX8urFmC9sxPLB8tTt_w@mail.gmail.com>,
 <BAY174-W384A7115F2470F6781642897B40@phx.gbl>,
 <21871.2742.306739.655881@max.nulle.part>,
 <CAHavPHFPYb6f5+5PWnvLRzFQvw0MLZPQgitRHuh-7SYQRMD6zQ@mail.gmail.com>
Message-ID: <BAY174-W17090A5418FADFF2F1B6797B20@phx.gbl>

Hi,

Tried again just now. Still doesn't work.

Install via install.packages('RcppOctave') produces the same error as last year

Error : /tmp/RtmpCY4NvV/R.INSTALLa3a2685bdea/RcppOctave/man/o_addpath.Rd:40: .onLoad failed in loadNamespace() for 'RcppOctave', details:
  call: lapply(X = X, FUN = FUN, ...)
  error: object 'dlibs' not found
ERROR: installing Rd objects failed for package ?RcppOctave?


Install the development version via  devtools::install_github('renozao/RcppOctave', ref = 'develop') produced something different

RcppOctave.so conversion.o rcpp_octave.o -L/usr/local/lib/octave/4.0.0 -L/usr/local/lib -loctinterp -loctave -L/usr/lib/R/lib -lR
installing to /usr/lib/R/library/RcppOctave/libs
** R
** demo
** exec
** inst
** tests
** preparing package for lazy loading
Error : bad 'S3method' directive: S3method(.DollarNames.Octave)
ERROR: lazy loading failed for package ?RcppOctave?
* removing ?/usr/lib/R/library/RcppOctave?
Error: Command failed (1)


Since these are different from last time's error and the development branch has been updated about 14 hours ago I think this is the version that contains the purported fix.

Thanks for looking into it.



Date: Wed, 3 Jun 2015 21:52:01 +0200
Subject: Re: [Rcppoctave-user] Cannot install rcppoctave
From: renaud at mancala.cbio.uct.ac.za
To: edd at debian.org
CC: kammon101 at hotmail.ca; renaud at mancala.cbio.uct.ac.za; rcppoctave-user at lists.r-forge.r-project.org

I have fix for this  ready to be pushed. Will do tomorrow.

On Wednesday, June 3, 2015, Dirk Eddelbuettel <edd at debian.org> wrote:


On 3 June 2015 at 09:26, kam kammon wrote:

| Thanks, just opened an issue at github.



Could you consider working on a pull request addressing the issue?



Dirk



--

http://dirk.eddelbuettel.com | @eddelbuettel | edd at debian.org



 		 	   		  
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From renaud at mancala.cbio.uct.ac.za  Fri Jun  5 11:23:59 2015
From: renaud at mancala.cbio.uct.ac.za (Renaud Gaujoux)
Date: Fri, 5 Jun 2015 11:23:59 +0200
Subject: [Rcppoctave-user] Cannot install rcppoctave
In-Reply-To: <BAY174-W17090A5418FADFF2F1B6797B20@phx.gbl>
References: <BAY174-W81A49CD0C4E766B9A9B3897DE0@phx.gbl>
 <CAHavPHEv1fuvye+sjMoTjdkJHwFY_V2pJgFVx=zmPBj26o2wBQ@mail.gmail.com>
 <BAY174-W1BC0AE0189EA7EDB7813B97D90@phx.gbl>
 <BAY174-W264270B1FD7449A2DE5C4C97C80@phx.gbl>
 <CAHavPHFGFDzdei7GFxxntRcU34FamRbX8urFmC9sxPLB8tTt_w@mail.gmail.com>
 <BAY174-W384A7115F2470F6781642897B40@phx.gbl>
 <21871.2742.306739.655881@max.nulle.part>
 <CAHavPHFPYb6f5+5PWnvLRzFQvw0MLZPQgitRHuh-7SYQRMD6zQ@mail.gmail.com>
 <BAY174-W17090A5418FADFF2F1B6797B20@phx.gbl>
Message-ID: <CAHavPHHnQz2Sq0sztLHaav6n8hGFpSbJV86b-Vy3ceFhBZSmMg@mail.gmail.com>

>
>
> Install via install.packages('RcppOctave') produces the same error as last
> year
>

The fix has not made it to CRAN yet so, I don't expect this to work.
The error you see in this case is not related to the changes in 4.0.0, but
was a bug that I think only appears if Octave is not found in the usual
location, which I believe is your case (it does not shows up on CRAN
checks).


> Error : bad 'S3method' directive: S3method(.DollarNames.Octave)
>
>
My bad on this one.
A fix is now in both master and develop on GitHub.
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From kammon101 at hotmail.ca  Sat Jun  6 03:37:01 2015
From: kammon101 at hotmail.ca (kam kammon)
Date: Fri, 5 Jun 2015 21:37:01 -0400
Subject: [Rcppoctave-user] Cannot install rcppoctave
In-Reply-To: <CAHavPHHnQz2Sq0sztLHaav6n8hGFpSbJV86b-Vy3ceFhBZSmMg@mail.gmail.com>
References: <BAY174-W81A49CD0C4E766B9A9B3897DE0@phx.gbl>,
 <CAHavPHEv1fuvye+sjMoTjdkJHwFY_V2pJgFVx=zmPBj26o2wBQ@mail.gmail.com>,
 <BAY174-W1BC0AE0189EA7EDB7813B97D90@phx.gbl>,
 <BAY174-W264270B1FD7449A2DE5C4C97C80@phx.gbl>,
 <CAHavPHFGFDzdei7GFxxntRcU34FamRbX8urFmC9sxPLB8tTt_w@mail.gmail.com>,
 <BAY174-W384A7115F2470F6781642897B40@phx.gbl>,
 <21871.2742.306739.655881@max.nulle.part>,
 <CAHavPHFPYb6f5+5PWnvLRzFQvw0MLZPQgitRHuh-7SYQRMD6zQ@mail.gmail.com>,
 <BAY174-W17090A5418FADFF2F1B6797B20@phx.gbl>,
 <CAHavPHHnQz2Sq0sztLHaav6n8hGFpSbJV86b-Vy3ceFhBZSmMg@mail.gmail.com>
Message-ID: <BAY174-W4BF0548FB6EE45C36A74F97B10@phx.gbl>

Hi, Thanks. The develope branch install. But running the example .CallOctave ('eye', 3) crashes R

.CallOctave('eye', 3)

 *** caught segfault ***
address 0x4707000, cause 'memory not mapped'

Traceback:
 1: .Call("octave_feval", .NAME, list(...), argout, unlist, buffer.std,     PACKAGE = "RcppOctave")
 2: .CallOctave("eye", 3)



Date: Fri, 5 Jun 2015 11:23:59 +0200
Subject: Re: [Rcppoctave-user] Cannot install rcppoctave
From: renaud at mancala.cbio.uct.ac.za
To: kammon101 at hotmail.ca
CC: rcppoctave-user at lists.r-forge.r-project.org


Install via install.packages('RcppOctave') produces the same error as last year

The fix has not made it to CRAN yet so, I don't expect this to work.The error you see in this case is not related to the changes in 4.0.0, but was a bug that I think only appears if Octave is not found in the usual location, which I believe is your case (it does not shows up on CRAN checks).

Error : bad 'S3method' directive: S3method(.DollarNames.Octave)


My bad on this one.A fix is now in both master and develop on GitHub.  		 	   		  
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From renaud at mancala.cbio.uct.ac.za  Mon Jun  8 16:42:59 2015
From: renaud at mancala.cbio.uct.ac.za (Renaud Gaujoux)
Date: Mon, 8 Jun 2015 16:42:59 +0200
Subject: [Rcppoctave-user] Cannot install rcppoctave
In-Reply-To: <BAY174-W4BF0548FB6EE45C36A74F97B10@phx.gbl>
References: <BAY174-W81A49CD0C4E766B9A9B3897DE0@phx.gbl>
 <CAHavPHEv1fuvye+sjMoTjdkJHwFY_V2pJgFVx=zmPBj26o2wBQ@mail.gmail.com>
 <BAY174-W1BC0AE0189EA7EDB7813B97D90@phx.gbl>
 <BAY174-W264270B1FD7449A2DE5C4C97C80@phx.gbl>
 <CAHavPHFGFDzdei7GFxxntRcU34FamRbX8urFmC9sxPLB8tTt_w@mail.gmail.com>
 <BAY174-W384A7115F2470F6781642897B40@phx.gbl>
 <21871.2742.306739.655881@max.nulle.part>
 <CAHavPHFPYb6f5+5PWnvLRzFQvw0MLZPQgitRHuh-7SYQRMD6zQ@mail.gmail.com>
 <BAY174-W17090A5418FADFF2F1B6797B20@phx.gbl>
 <CAHavPHHnQz2Sq0sztLHaav6n8hGFpSbJV86b-Vy3ceFhBZSmMg@mail.gmail.com>
 <BAY174-W4BF0548FB6EE45C36A74F97B10@phx.gbl>
Message-ID: <CAHavPHEH54xZfC1WErs-JXLJP-cZW9XDHaMVXLSecKxovAfMWQ@mail.gmail.com>

Hi,

This should be fixed now in 0.16.2.
The issue came from the fact that the Octave Matrix class now inherits from
NDArray, while it directly derived from Array<double> in previous versions
of Octave.
AFAIK, there is no mention of this in the NEWS...




On 6 June 2015 at 03:37, kam kammon <kammon101 at hotmail.ca> wrote:

> Hi, Thanks. The develope branch install. But running the example
> .CallOctave ('eye', 3) crashes R
>
> .CallOctave('eye', 3)
>
>  *** caught segfault ***
> address 0x4707000, cause 'memory not mapped'
>
> Traceback:
>  1: .Call("octave_feval", .NAME, list(...), argout, unlist,
> buffer.std,     PACKAGE = "RcppOctave")
>  2: .CallOctave("eye", 3)
>
>
>
> ------------------------------
> Date: Fri, 5 Jun 2015 11:23:59 +0200
> Subject: Re: [Rcppoctave-user] Cannot install rcppoctave
> From: renaud at mancala.cbio.uct.ac.za
> To: kammon101 at hotmail.ca
> CC: rcppoctave-user at lists.r-forge.r-project.org
>
>
>
> Install via install.packages('RcppOctave') produces the same error as last
> year
>
>
> The fix has not made it to CRAN yet so, I don't expect this to work.
> The error you see in this case is not related to the changes in 4.0.0, but
> was a bug that I think only appears if Octave is not found in the usual
> location, which I believe is your case (it does not shows up on CRAN
> checks).
>
>
> Error : bad 'S3method' directive: S3method(.DollarNames.Octave)
>
>
> My bad on this one.
> A fix is now in both master and develop on GitHub.
>
>
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From kammon101 at hotmail.ca  Sat Jun 20 12:40:39 2015
From: kammon101 at hotmail.ca (kam kammon)
Date: Sat, 20 Jun 2015 06:40:39 -0400
Subject: [Rcppoctave-user] Cannot install rcppoctave
In-Reply-To: <CAHavPHEH54xZfC1WErs-JXLJP-cZW9XDHaMVXLSecKxovAfMWQ@mail.gmail.com>
References: <BAY174-W81A49CD0C4E766B9A9B3897DE0@phx.gbl>,
 <CAHavPHEv1fuvye+sjMoTjdkJHwFY_V2pJgFVx=zmPBj26o2wBQ@mail.gmail.com>,
 <BAY174-W1BC0AE0189EA7EDB7813B97D90@phx.gbl>,
 <BAY174-W264270B1FD7449A2DE5C4C97C80@phx.gbl>,
 <CAHavPHFGFDzdei7GFxxntRcU34FamRbX8urFmC9sxPLB8tTt_w@mail.gmail.com>,
 <BAY174-W384A7115F2470F6781642897B40@phx.gbl>,
 <21871.2742.306739.655881@max.nulle.part>,
 <CAHavPHFPYb6f5+5PWnvLRzFQvw0MLZPQgitRHuh-7SYQRMD6zQ@mail.gmail.com>,
 <BAY174-W17090A5418FADFF2F1B6797B20@phx.gbl>,
 <CAHavPHHnQz2Sq0sztLHaav6n8hGFpSbJV86b-Vy3ceFhBZSmMg@mail.gmail.com>,
 <BAY174-W4BF0548FB6EE45C36A74F97B10@phx.gbl>,
 <CAHavPHEH54xZfC1WErs-JXLJP-cZW9XDHaMVXLSecKxovAfMWQ@mail.gmail.com>
Message-ID: <BAY174-W23D99B29CDA2ED3D8C7A3D97A30@phx.gbl>

Just install from master branch and it is working now. Thanks for fixing this! 

Date: Mon, 8 Jun 2015 16:42:59 +0200
Subject: Re: [Rcppoctave-user] Cannot install rcppoctave
From: renaud at mancala.cbio.uct.ac.za
To: kammon101 at hotmail.ca
CC: rcppoctave-user at lists.r-forge.r-project.org

Hi,
This should be fixed now in 0.16.2.The issue came from the fact that the Octave Matrix class now inherits from NDArray, while it directly derived from Array<double> in previous versions of Octave.AFAIK, there is no mention of this in the NEWS...



On 6 June 2015 at 03:37, kam kammon <kammon101 at hotmail.ca> wrote:



Hi, Thanks. The develope branch install. But running the example .CallOctave ('eye', 3) crashes R

.CallOctave('eye', 3)

 *** caught segfault ***
address 0x4707000, cause 'memory not mapped'

Traceback:
 1: .Call("octave_feval", .NAME, list(...), argout, unlist, buffer.std,     PACKAGE = "RcppOctave")
 2: .CallOctave("eye", 3)



Date: Fri, 5 Jun 2015 11:23:59 +0200
Subject: Re: [Rcppoctave-user] Cannot install rcppoctave
From: renaud at mancala.cbio.uct.ac.za
To: kammon101 at hotmail.ca
CC: rcppoctave-user at lists.r-forge.r-project.org


Install via install.packages('RcppOctave') produces the same error as last year

The fix has not made it to CRAN yet so, I don't expect this to work.The error you see in this case is not related to the changes in 4.0.0, but was a bug that I think only appears if Octave is not found in the usual location, which I believe is your case (it does not shows up on CRAN checks).

Error : bad 'S3method' directive: S3method(.DollarNames.Octave)


My bad on this one.A fix is now in both master and develop on GitHub.  		 	   		  

 		 	   		  
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