[Rcppoctave-user] Apple Blues

Dominick Samperi djsamperi at gmail.com
Sun Nov 10 16:00:10 CET 2013


No I was checking using the checked-out directory. Using the
tar.gz archive eliminates the need for explicit cleanup and
deleting directories, but the try issue remains. (It seems to
me that R CMD check should call cleanup automatically,
but it doesn't, and there is no --clean option.)

Indeed, I cannot build the tar.gz file if I don't splice out the
try calls. I'm attaching the log for R CMD build RcppOctave.


On Sun, Nov 10, 2013 at 6:42 AM, Renaud Gaujoux <
renaud at mancala.cbio.uct.ac.za> wrote:

> Are you checking the tar.gz file?
> R CMD chech --as-cran RcppOctave_0.13.3.tar.gz
>
> This should not give you notes about the extra files and directories. The
> try/tryCatch error is weird. I will have a look on Monday.
>
> Renaud
>
> On Saturday, November 9, 2013, Dominick Samperi wrote:
>
>> With all suggested packages installed I managed to get R CMD check
>> --as-cran
>> to run clean (no errors, warnings, or notes), but a few "non-standard"
>> directories
>> had to be removed, cleanup had to be run explicitly, and RcppOctave.Rnw
>> had
>> to be modified to use tryCatch instead of try. The attached shell script
>> was used
>> to generate the clean check
>>
>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://lists.r-forge.r-project.org/pipermail/rcppoctave-user/attachments/20131110/b27e6bb9/attachment-0001.html>
-------------- next part --------------
* checking for file ?RcppOctave/DESCRIPTION? ... OK
* preparing ?RcppOctave?:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* running ?cleanup?
* installing the package to process help pages
* building the PDF package manual
Hmm ... looks like a package
Converting Rd files to LaTeX ...
Creating pdf output from LaTeX ...

This is pdfTeX, Version 3.1415926-2.5-1.40.14 (TeX Live 2013)
 restricted \write18 enabled.
entering extended mode

(/private/var/folders/dl/9ytrkbd570g3x_zht7vw51zc0000gn/T/Rtmp3WxA28/Rbuild1269
668fc7cb/RcppOctave/.Rd2pdf4713/Rd2.tex
LaTeX2e <2011/06/27>
Babel <3.9f> and hyphenation patterns for 78 languages loaded.
(/usr/local/texlive/2013/texmf-dist/tex/latex/base/book.cls
Document Class: book 2007/10/19 v1.4h Standard LaTeX document class
(/usr/local/texlive/2013/texmf-dist/tex/latex/base/bk10.clo))
(/Library/Frameworks/R.framework/Resources/share/texmf/tex/latex/Rd.sty
(/usr/local/texlive/2013/texmf-dist/tex/latex/base/ifthen.sty)
(/usr/local/texlive/2013/texmf-dist/tex/latex/tools/longtable.sty)
(/usr/local/texlive/2013/texmf-dist/tex/latex/tools/bm.sty)
(/usr/local/texlive/2013/texmf-dist/tex/latex/base/alltt.sty)
(/usr/local/texlive/2013/texmf-dist/tex/latex/tools/verbatim.sty)
(/usr/local/texlive/2013/texmf-dist/tex/latex/url/url.sty)
(/usr/local/texlive/2013/texmf-dist/tex/latex/base/textcomp.sty
(/usr/local/texlive/2013/texmf-dist/tex/latex/base/ts1enc.def))
(/usr/local/texlive/2013/texmf-dist/tex/latex/base/fontenc.sty
(/usr/local/texlive/2013/texmf-dist/tex/latex/base/t1enc.def))
(/usr/local/texlive/2013/texmf-dist/tex/latex/psnfss/times.sty)
(/usr/local/texlive/2013/texmf-dist/tex/latex/inconsolata/inconsolata.sty
(/usr/local/texlive/2013/texmf-dist/tex/latex/graphics/keyval.sty))
(/usr/local/texlive/2013/texmf-dist/tex/latex/graphics/color.sty
(/usr/local/texlive/2013/texmf-dist/tex/latex/latexconfig/color.cfg)
(/usr/local/texlive/2013/texmf-dist/tex/latex/pdftex-def/pdftex.def
(/usr/local/texlive/2013/texmf-dist/tex/generic/oberdiek/infwarerr.sty)
(/usr/local/texlive/2013/texmf-dist/tex/generic/oberdiek/ltxcmds.sty)))
(/usr/local/texlive/2013/texmf-dist/tex/latex/hyperref/hyperref.sty
(/usr/local/texlive/2013/texmf-dist/tex/generic/oberdiek/hobsub-hyperref.sty
(/usr/local/texlive/2013/texmf-dist/tex/generic/oberdiek/hobsub-generic.sty))
(/usr/local/texlive/2013/texmf-dist/tex/generic/ifxetex/ifxetex.sty)
(/usr/local/texlive/2013/texmf-dist/tex/latex/oberdiek/auxhook.sty)
(/usr/local/texlive/2013/texmf-dist/tex/latex/oberdiek/kvoptions.sty)
(/usr/local/texlive/2013/texmf-dist/tex/latex/hyperref/pd1enc.def)
(/usr/local/texlive/2013/texmf-dist/tex/latex/latexconfig/hyperref.cfg))

Package hyperref Message: Driver (autodetected): hpdftex.

(/usr/local/texlive/2013/texmf-dist/tex/latex/hyperref/hpdftex.def
(/usr/local/texlive/2013/texmf-dist/tex/latex/oberdiek/rerunfilecheck.sty))

Package hyperref Warning: Option `hyperindex' has already been used,
(hyperref)                setting the option has no effect on input line 361.


Package hyperref Warning: Option `pagebackref' has already been used,
(hyperref)                setting the option has no effect on input line 361.

) (/usr/local/texlive/2013/texmf-dist/tex/latex/base/makeidx.sty)
(/usr/local/texlive/2013/texmf-dist/tex/latex/base/inputenc.sty
(/usr/local/texlive/2013/texmf-dist/tex/latex/base/utf8.def
(/usr/local/texlive/2013/texmf-dist/tex/latex/base/t1enc.dfu)
(/usr/local/texlive/2013/texmf-dist/tex/latex/base/ot1enc.dfu)
(/usr/local/texlive/2013/texmf-dist/tex/latex/base/omsenc.dfu)
(/usr/local/texlive/2013/texmf-dist/tex/latex/base/ts1enc.dfu))
(/usr/local/texlive/2013/texmf-dist/tex/latex/base/latin1.def))
Writing index file Rd2.idx
No file Rd2.aux.
(/usr/local/texlive/2013/texmf-dist/tex/latex/base/ts1cmr.fd)
(/usr/local/texlive/2013/texmf-dist/tex/latex/psnfss/t1ptm.fd)
(/usr/local/texlive/2013/texmf-dist/tex/context/base/supp-pdf.mkii
[Loading MPS to PDF converter (version 2006.09.02).]
) (/usr/local/texlive/2013/texmf-dist/tex/latex/hyperref/nameref.sty
(/usr/local/texlive/2013/texmf-dist/tex/generic/oberdiek/gettitlestring.sty))
(/usr/local/texlive/2013/texmf-dist/tex/latex/inconsolata/t1fi4.fd)
(/usr/local/texlive/2013/texmf-dist/tex/latex/psnfss/ts1ptm.fd)
(/usr/local/texlive/2013/texmf-dist/tex/latex/psnfss/t1phv.fd)
(/usr/local/texlive/2013/texmf-dist/tex/latex/base/utf8.def) [1{/usr/local/texl
ive/2013/texmf-var/fonts/map/pdftex/updmap/pdftex.map}]
(/usr/local/texlive/2013/texmf-dist/tex/latex/inconsolata/ts1fi4.fd) [2]
(/usr/local/texlive/2013/texmf-dist/tex/latex/base/utf8.def)
(/usr/local/texlive/2013/texmf-dist/tex/latex/base/utf8.def)
Overfull \hbox (33.30719pt too wide) in paragraph at lines 173--178
\T1/ptm/m/n/10 that al-lows for di-rect ac-cess to Oc-tave func-tions and vari-
ables us-ing calls such as: \T1/fi4/m/n/10 .O$svd(matrix(1:9,3))\T1/ptm/m/n/10 
. 

Overfull \hbox (13.44812pt too wide) in paragraph at lines 207--216
[]\T1/ptm/m/n/10 indices spec-i-fy-ing el-e-ments to ex-tract or re-place. In-d
ices are \T1/fi4/m/n/10 numeric \T1/ptm/m/n/10 or \T1/fi4/m/n/10 character
[3] (/usr/local/texlive/2013/texmf-dist/tex/latex/base/utf8.def) [4]
(/usr/local/texlive/2013/texmf-dist/tex/latex/base/utf8.def) [5]
(/usr/local/texlive/2013/texmf-dist/tex/latex/base/utf8.def) [6]
(/usr/local/texlive/2013/texmf-dist/tex/latex/base/utf8.def) [7]
(/usr/local/texlive/2013/texmf-dist/tex/latex/base/utf8.def)
Overfull \hbox (61.77814pt too wide) in paragraph at lines 573--576
[]\T1/ptm/m/n/10 option that spec-i-fies how the path should be added. Pos-si-b
le val-ues are: \T1/fi4/m/n/10 -begin, 0, -end,  1\T1/ptm/m/n/10 .
[8] [9] (/usr/local/texlive/2013/texmf-dist/tex/latex/base/utf8.def) [10]
[11] (/usr/local/texlive/2013/texmf-dist/tex/latex/base/utf8.def) [12] [13]
(/usr/local/texlive/2013/texmf-dist/tex/latex/base/utf8.def) [14]
(/usr/local/texlive/2013/texmf-dist/tex/latex/base/utf8.def) [15]
(/usr/local/texlive/2013/texmf-dist/tex/latex/base/utf8.def) [16] [17]
(/usr/local/texlive/2013/texmf-dist/tex/latex/base/utf8.def) [18]
(/usr/local/texlive/2013/texmf-dist/tex/latex/base/utf8.def) [19] [20] [21]
(/usr/local/texlive/2013/texmf-dist/tex/latex/base/utf8.def) [22]
(/usr/local/texlive/2013/texmf-dist/tex/latex/base/utf8.def)
Overfull \hbox (89.78088pt too wide) in paragraph at lines 1529--1529
 []\T1/fi4/m/n/10 Generates standard-exponential random variatesas R function r
exp -- using the current RNG from R.[] 

Overfull \hbox (24.78088pt too wide) in paragraph at lines 1532--1532
 []\T1/fi4/m/n/10 rande(n, k)   returns n*k matrix with uncorrelated E(0, 1) de
viates drawn in columns[] 

Overfull \hbox (24.78088pt too wide) in paragraph at lines 1533--1533
 []\T1/fi4/m/n/10 rande(n)      returns n*n matrix with uncorrelated E(0, 1) de
viates drawn in columns[] 
[23] (/usr/local/texlive/2013/texmf-dist/tex/latex/base/utf8.def)
Overfull \hbox (29.78088pt too wide) in paragraph at lines 1603--1603
 []\T1/fi4/m/n/10 Generates Gamma random variates as R function rgamma -- using
 the current RNG from R.[] 

Overfull \hbox (59.78088pt too wide) in paragraph at lines 1607--1607
 []\T1/fi4/m/n/10 randg(shape, n)  returns n*n matrix with uncorrelated G(shape
, 1) deviates drawn in columns[] 

Overfull \hbox (74.78088pt too wide) in paragraph at lines 1608--1608
 []\T1/fi4/m/n/10 randg(shape, n, p)  returns n*p matrix with uncorrelated G(sh
ape, 1) deviates drawn in columns[] 

Overfull \hbox (129.78088pt too wide) in paragraph at lines 1609--1609
 []\T1/fi4/m/n/10 randg(shape, n, p, scale)  returns n*p matrix with uncorrelat
ed G(shape, scale) deviates drawn in columns[] 
[24] (/usr/local/texlive/2013/texmf-dist/tex/latex/base/utf8.def)
Overfull \hbox (74.78088pt too wide) in paragraph at lines 1679--1679
 []\T1/fi4/m/n/10 Generates standard-normal random variates as R function rnorm
 -- using the current RNG from R.[] 

Overfull \hbox (34.78088pt too wide) in paragraph at lines 1682--1682
 []\T1/fi4/m/n/10 randn(n, k)   returns a n*k matrix with uncorrelated N(0, 1) 
deviates drawn in columns[] 

Overfull \hbox (29.78088pt too wide) in paragraph at lines 1683--1683
 []\T1/fi4/m/n/10 randn(n)      returns a n*n matrix with uncorrelated N(0, 1) 
deviates draw in columns[] 
[25] (/usr/local/texlive/2013/texmf-dist/tex/latex/base/utf8.def) [26]
Overfull \hbox (34.78088pt too wide) in paragraph at lines 1777--1777
 []\T1/fi4/m/n/10 Generates uniform random variates as R function runif -- usin
g the current RNG from R.[] 

Overfull \hbox (29.78088pt too wide) in paragraph at lines 1780--1780
 []\T1/fi4/m/n/10 rand(n, k)   returns a n*k matrix with uncorrelated U(0, 1) d
eviates drawn in columns[] 

Overfull \hbox (29.78088pt too wide) in paragraph at lines 1781--1781
 []\T1/fi4/m/n/10 rand(n)      returns a n*n matrix with uncorrelated U(0, 1) d
eviates drawn in columns[] 
(/usr/local/texlive/2013/texmf-dist/tex/latex/base/utf8.def) [27]
(/usr/local/texlive/2013/texmf-dist/tex/latex/base/utf8.def) [28]
(/usr/local/texlive/2013/texmf-dist/tex/latex/base/utf8.def) [29]
(/usr/local/texlive/2013/texmf-dist/tex/latex/base/utf8.def) [30] [31]
(/usr/local/texlive/2013/texmf-dist/tex/latex/base/utf8.def) [32]
(/usr/local/texlive/2013/texmf-dist/tex/latex/base/utf8.def)
(/usr/local/texlive/2013/texmf-dist/tex/latex/base/utf8.def) [33]
(/usr/local/texlive/2013/texmf-dist/tex/latex/base/utf8.def)
No file Rd2.ind.
[34] (./Rd2.aux)

Package rerunfilecheck Warning: File `Rd2.out' has changed.
(rerunfilecheck)                Rerun to get outlines right
(rerunfilecheck)                or use package `bookmark'.

 )
(see the transcript file for additional information)pdfTeX warning (dest): name
{Rfn.system.file} has been referenced but does not exist, replaced by a fixed o
ne

pdfTeX warning (dest): name{Rfn.compareVersion} has been referenced but does no
t exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.set.seed} has been referenced but does not exis
t, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.runif} has been referenced but does not exist, 
replaced by a fixed one

pdfTeX warning (dest): name{Rfn.rnorm} has been referenced but does not exist, 
replaced by a fixed one

pdfTeX warning (dest): name{Rfn.rgamma} has been referenced but does not exist,
 replaced by a fixed one

pdfTeX warning (dest): name{Rfn.rexp} has been referenced but does not exist, r
eplaced by a fixed one

pdfTeX warning (dest): name{Rfn.Rd2HTML} has been referenced but does not exist
, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.Rd2latex} has been referenced but does not exis
t, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.Rd2txt} has been referenced but does not exist,
 replaced by a fixed one

pdfTeX warning (dest): name{Rfn.substitute} has been referenced but does not ex
ist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.get} has been referenced but does not exist, re
placed by a fixed one

pdfTeX warning (dest): name{Rfn.dimnames} has been referenced but does not exis
t, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.as.integer} has been referenced but does not ex
ist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.names} has been referenced but does not exist, 
replaced by a fixed one

pdfTeX warning (dest): name{Rfn.backtick} has been referenced but does not exis
t, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.name} has been referenced but does not exist, r
eplaced by a fixed one

pdfTeX warning (dest): name{Rfn.Octave.Rdash.class} has been referenced but doe
s not exist, replaced by a fixed one

{/usr/local/texlive/2013/texmf-dist/fonts/enc/dvips/base/8r.enc}{/usr/local/tex
live/2013/texmf-dist/fonts/enc/dvips/inconsolata/fi4-ec.enc}</usr/local/texlive
/2013/texmf-dist/fonts/type1/public/inconsolata/Inconsolata.pfb></usr/local/tex
live/2013/texmf-dist/fonts/type1/urw/helvetic/uhvr8a.pfb></usr/local/texlive/20
13/texmf-dist/fonts/type1/urw/times/utmb8a.pfb></usr/local/texlive/2013/texmf-d
ist/fonts/type1/urw/times/utmbi8a.pfb></usr/local/texlive/2013/texmf-dist/fonts
/type1/urw/times/utmr8a.pfb></usr/local/texlive/2013/texmf-dist/fonts/type1/urw
/times/utmr8a.pfb></usr/local/texlive/2013/texmf-dist/fonts/type1/urw/times/utm
ri8a.pfb>
Output written on Rd2.pdf (34 pages, 143462 bytes).
Transcript written on Rd2.log.
This is makeindex, version 2.15 [TeX Live 2013] (kpathsea + Thai support).
Scanning input file ./Rd2.idx....done (110 entries accepted, 0 rejected).
Sorting entries....done (771 comparisons).
Generating output file ./Rd2.ind....done (136 lines written, 2 warnings).
Output written in ./Rd2.ind.
Transcript written in ./Rd2.ilg.
This is pdfTeX, Version 3.1415926-2.5-1.40.14 (TeX Live 2013)
 restricted \write18 enabled.
entering extended mode

(/private/var/folders/dl/9ytrkbd570g3x_zht7vw51zc0000gn/T/Rtmp3WxA28/Rbuild1269
668fc7cb/RcppOctave/.Rd2pdf4713/Rd2.tex
LaTeX2e <2011/06/27>
Babel <3.9f> and hyphenation patterns for 78 languages loaded.
(/usr/local/texlive/2013/texmf-dist/tex/latex/base/book.cls
Document Class: book 2007/10/19 v1.4h Standard LaTeX document class
(/usr/local/texlive/2013/texmf-dist/tex/latex/base/bk10.clo))
(/Library/Frameworks/R.framework/Resources/share/texmf/tex/latex/Rd.sty
(/usr/local/texlive/2013/texmf-dist/tex/latex/base/ifthen.sty)
(/usr/local/texlive/2013/texmf-dist/tex/latex/tools/longtable.sty)
(/usr/local/texlive/2013/texmf-dist/tex/latex/tools/bm.sty)
(/usr/local/texlive/2013/texmf-dist/tex/latex/base/alltt.sty)
(/usr/local/texlive/2013/texmf-dist/tex/latex/tools/verbatim.sty)
(/usr/local/texlive/2013/texmf-dist/tex/latex/url/url.sty)
(/usr/local/texlive/2013/texmf-dist/tex/latex/base/textcomp.sty
(/usr/local/texlive/2013/texmf-dist/tex/latex/base/ts1enc.def))
(/usr/local/texlive/2013/texmf-dist/tex/latex/base/fontenc.sty
(/usr/local/texlive/2013/texmf-dist/tex/latex/base/t1enc.def))
(/usr/local/texlive/2013/texmf-dist/tex/latex/psnfss/times.sty)
(/usr/local/texlive/2013/texmf-dist/tex/latex/inconsolata/inconsolata.sty
(/usr/local/texlive/2013/texmf-dist/tex/latex/graphics/keyval.sty))
(/usr/local/texlive/2013/texmf-dist/tex/latex/graphics/color.sty
(/usr/local/texlive/2013/texmf-dist/tex/latex/latexconfig/color.cfg)
(/usr/local/texlive/2013/texmf-dist/tex/latex/pdftex-def/pdftex.def
(/usr/local/texlive/2013/texmf-dist/tex/generic/oberdiek/infwarerr.sty)
(/usr/local/texlive/2013/texmf-dist/tex/generic/oberdiek/ltxcmds.sty)))
(/usr/local/texlive/2013/texmf-dist/tex/latex/hyperref/hyperref.sty
(/usr/local/texlive/2013/texmf-dist/tex/generic/oberdiek/hobsub-hyperref.sty
(/usr/local/texlive/2013/texmf-dist/tex/generic/oberdiek/hobsub-generic.sty))
(/usr/local/texlive/2013/texmf-dist/tex/generic/ifxetex/ifxetex.sty)
(/usr/local/texlive/2013/texmf-dist/tex/latex/oberdiek/auxhook.sty)
(/usr/local/texlive/2013/texmf-dist/tex/latex/oberdiek/kvoptions.sty)
(/usr/local/texlive/2013/texmf-dist/tex/latex/hyperref/pd1enc.def)
(/usr/local/texlive/2013/texmf-dist/tex/latex/latexconfig/hyperref.cfg))

Package hyperref Message: Driver (autodetected): hpdftex.

(/usr/local/texlive/2013/texmf-dist/tex/latex/hyperref/hpdftex.def
(/usr/local/texlive/2013/texmf-dist/tex/latex/oberdiek/rerunfilecheck.sty))

Package hyperref Warning: Option `hyperindex' has already been used,
(hyperref)                setting the option has no effect on input line 361.


Package hyperref Warning: Option `pagebackref' has already been used,
(hyperref)                setting the option has no effect on input line 361.

) (/usr/local/texlive/2013/texmf-dist/tex/latex/base/makeidx.sty)
(/usr/local/texlive/2013/texmf-dist/tex/latex/base/inputenc.sty
(/usr/local/texlive/2013/texmf-dist/tex/latex/base/utf8.def
(/usr/local/texlive/2013/texmf-dist/tex/latex/base/t1enc.dfu)
(/usr/local/texlive/2013/texmf-dist/tex/latex/base/ot1enc.dfu)
(/usr/local/texlive/2013/texmf-dist/tex/latex/base/omsenc.dfu)
(/usr/local/texlive/2013/texmf-dist/tex/latex/base/ts1enc.dfu))
(/usr/local/texlive/2013/texmf-dist/tex/latex/base/latin1.def))
Writing index file Rd2.idx
(./Rd2.aux) (/usr/local/texlive/2013/texmf-dist/tex/latex/base/ts1cmr.fd)
(/usr/local/texlive/2013/texmf-dist/tex/latex/psnfss/t1ptm.fd)
(/usr/local/texlive/2013/texmf-dist/tex/context/base/supp-pdf.mkii
[Loading MPS to PDF converter (version 2006.09.02).]
) (/usr/local/texlive/2013/texmf-dist/tex/latex/hyperref/nameref.sty
(/usr/local/texlive/2013/texmf-dist/tex/generic/oberdiek/gettitlestring.sty))
(./Rd2.out) (./Rd2.out)
(/usr/local/texlive/2013/texmf-dist/tex/latex/inconsolata/t1fi4.fd)
(/usr/local/texlive/2013/texmf-dist/tex/latex/psnfss/ts1ptm.fd)
(/usr/local/texlive/2013/texmf-dist/tex/latex/psnfss/t1phv.fd) (./Rd2.toc
[1{/usr/local/texlive/2013/texmf-var/fonts/map/pdftex/updmap/pdftex.map}])
(/usr/local/texlive/2013/texmf-dist/tex/latex/base/utf8.def) [2]
(/usr/local/texlive/2013/texmf-dist/tex/latex/inconsolata/ts1fi4.fd)
(/usr/local/texlive/2013/texmf-dist/tex/latex/base/utf8.def)
(/usr/local/texlive/2013/texmf-dist/tex/latex/base/utf8.def) [3]
Overfull \hbox (33.30719pt too wide) in paragraph at lines 173--178
\T1/ptm/m/n/10 that al-lows for di-rect ac-cess to Oc-tave func-tions and vari-
ables us-ing calls such as: \T1/fi4/m/n/10 .O$svd(matrix(1:9,3))\T1/ptm/m/n/10 
. 

Overfull \hbox (13.44812pt too wide) in paragraph at lines 207--216
[]\T1/ptm/m/n/10 indices spec-i-fy-ing el-e-ments to ex-tract or re-place. In-d
ices are \T1/fi4/m/n/10 numeric \T1/ptm/m/n/10 or \T1/fi4/m/n/10 character
[4] (/usr/local/texlive/2013/texmf-dist/tex/latex/base/utf8.def) [5]
(/usr/local/texlive/2013/texmf-dist/tex/latex/base/utf8.def)
(/usr/local/texlive/2013/texmf-dist/tex/latex/base/utf8.def) [6]
(/usr/local/texlive/2013/texmf-dist/tex/latex/base/utf8.def) [7] [8]
(/usr/local/texlive/2013/texmf-dist/tex/latex/base/utf8.def)
Overfull \hbox (61.77814pt too wide) in paragraph at lines 573--576
[]\T1/ptm/m/n/10 option that spec-i-fies how the path should be added. Pos-si-b
le val-ues are: \T1/fi4/m/n/10 -begin, 0, -end,  1\T1/ptm/m/n/10 .
[9] (/usr/local/texlive/2013/texmf-dist/tex/latex/base/utf8.def) [10] [11]
(/usr/local/texlive/2013/texmf-dist/tex/latex/base/utf8.def)
Underfull \vbox (badness 10000) has occurred while \output is active [12]
[13] [14] (/usr/local/texlive/2013/texmf-dist/tex/latex/base/utf8.def) [15]
(/usr/local/texlive/2013/texmf-dist/tex/latex/base/utf8.def) [16]
(/usr/local/texlive/2013/texmf-dist/tex/latex/base/utf8.def) [17] [18]
(/usr/local/texlive/2013/texmf-dist/tex/latex/base/utf8.def) [19]
(/usr/local/texlive/2013/texmf-dist/tex/latex/base/utf8.def) [20]
Underfull \vbox (badness 10000) has occurred while \output is active [21]
(/usr/local/texlive/2013/texmf-dist/tex/latex/base/utf8.def) [22]
(/usr/local/texlive/2013/texmf-dist/tex/latex/base/utf8.def) [23]
Overfull \hbox (89.78088pt too wide) in paragraph at lines 1529--1529
 []\T1/fi4/m/n/10 Generates standard-exponential random variatesas R function r
exp -- using the current RNG from R.[] 

Overfull \hbox (24.78088pt too wide) in paragraph at lines 1532--1532
 []\T1/fi4/m/n/10 rande(n, k)   returns n*k matrix with uncorrelated E(0, 1) de
viates drawn in columns[] 

Overfull \hbox (24.78088pt too wide) in paragraph at lines 1533--1533
 []\T1/fi4/m/n/10 rande(n)      returns n*n matrix with uncorrelated E(0, 1) de
viates drawn in columns[] 
(/usr/local/texlive/2013/texmf-dist/tex/latex/base/utf8.def) [24]
Overfull \hbox (29.78088pt too wide) in paragraph at lines 1603--1603
 []\T1/fi4/m/n/10 Generates Gamma random variates as R function rgamma -- using
 the current RNG from R.[] 

Overfull \hbox (59.78088pt too wide) in paragraph at lines 1607--1607
 []\T1/fi4/m/n/10 randg(shape, n)  returns n*n matrix with uncorrelated G(shape
, 1) deviates drawn in columns[] 

Overfull \hbox (74.78088pt too wide) in paragraph at lines 1608--1608
 []\T1/fi4/m/n/10 randg(shape, n, p)  returns n*p matrix with uncorrelated G(sh
ape, 1) deviates drawn in columns[] 

Overfull \hbox (129.78088pt too wide) in paragraph at lines 1609--1609
 []\T1/fi4/m/n/10 randg(shape, n, p, scale)  returns n*p matrix with uncorrelat
ed G(shape, scale) deviates drawn in columns[] 
[25] (/usr/local/texlive/2013/texmf-dist/tex/latex/base/utf8.def)
Overfull \hbox (74.78088pt too wide) in paragraph at lines 1679--1679
 []\T1/fi4/m/n/10 Generates standard-normal random variates as R function rnorm
 -- using the current RNG from R.[] 

Overfull \hbox (34.78088pt too wide) in paragraph at lines 1682--1682
 []\T1/fi4/m/n/10 randn(n, k)   returns a n*k matrix with uncorrelated N(0, 1) 
deviates drawn in columns[] 

Overfull \hbox (29.78088pt too wide) in paragraph at lines 1683--1683
 []\T1/fi4/m/n/10 randn(n)      returns a n*n matrix with uncorrelated N(0, 1) 
deviates draw in columns[] 
[26] (/usr/local/texlive/2013/texmf-dist/tex/latex/base/utf8.def)
Overfull \hbox (34.78088pt too wide) in paragraph at lines 1777--1777
 []\T1/fi4/m/n/10 Generates uniform random variates as R function runif -- usin
g the current RNG from R.[] 
[27]
Overfull \hbox (29.78088pt too wide) in paragraph at lines 1780--1780
 []\T1/fi4/m/n/10 rand(n, k)   returns a n*k matrix with uncorrelated U(0, 1) d
eviates drawn in columns[] 

Overfull \hbox (29.78088pt too wide) in paragraph at lines 1781--1781
 []\T1/fi4/m/n/10 rand(n)      returns a n*n matrix with uncorrelated U(0, 1) d
eviates drawn in columns[] 
(/usr/local/texlive/2013/texmf-dist/tex/latex/base/utf8.def) [28]
(/usr/local/texlive/2013/texmf-dist/tex/latex/base/utf8.def) [29]
(/usr/local/texlive/2013/texmf-dist/tex/latex/base/utf8.def) [30]
(/usr/local/texlive/2013/texmf-dist/tex/latex/base/utf8.def) [31] [32]
(/usr/local/texlive/2013/texmf-dist/tex/latex/base/utf8.def) [33]
(/usr/local/texlive/2013/texmf-dist/tex/latex/base/utf8.def)
(/usr/local/texlive/2013/texmf-dist/tex/latex/base/utf8.def) [34]
(/usr/local/texlive/2013/texmf-dist/tex/latex/base/utf8.def) (./Rd2.ind
[35]

LaTeX Font Warning: Font shape `T1/fi4/m/it' undefined
(Font)              using `T1/fi4/m/n' instead on input line 17.

[36]) (./Rd2.aux)

Package rerunfilecheck Warning: File `Rd2.out' has changed.
(rerunfilecheck)                Rerun to get outlines right
(rerunfilecheck)                or use package `bookmark'.


LaTeX Font Warning: Some font shapes were not available, defaults substituted.

 )
(see the transcript file for additional information)pdfTeX warning (dest): name
{Rfn.system.file} has been referenced but does not exist, replaced by a fixed o
ne

pdfTeX warning (dest): name{Rfn.compareVersion} has been referenced but does no
t exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.set.seed} has been referenced but does not exis
t, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.runif} has been referenced but does not exist, 
replaced by a fixed one

pdfTeX warning (dest): name{Rfn.rnorm} has been referenced but does not exist, 
replaced by a fixed one

pdfTeX warning (dest): name{Rfn.rgamma} has been referenced but does not exist,
 replaced by a fixed one

pdfTeX warning (dest): name{Rfn.rexp} has been referenced but does not exist, r
eplaced by a fixed one

pdfTeX warning (dest): name{Rfn.Rd2HTML} has been referenced but does not exist
, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.Rd2latex} has been referenced but does not exis
t, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.Rd2txt} has been referenced but does not exist,
 replaced by a fixed one

pdfTeX warning (dest): name{Rfn.substitute} has been referenced but does not ex
ist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.get} has been referenced but does not exist, re
placed by a fixed one

pdfTeX warning (dest): name{Rfn.dimnames} has been referenced but does not exis
t, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.as.integer} has been referenced but does not ex
ist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.names} has been referenced but does not exist, 
replaced by a fixed one

pdfTeX warning (dest): name{Rfn.backtick} has been referenced but does not exis
t, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.name} has been referenced but does not exist, r
eplaced by a fixed one

pdfTeX warning (dest): name{Rfn.Octave.Rdash.class} has been referenced but doe
s not exist, replaced by a fixed one

{/usr/local/texlive/2013/texmf-dist/fonts/enc/dvips/base/8r.enc}{/usr/local/tex
live/2013/texmf-dist/fonts/enc/dvips/inconsolata/fi4-ec.enc}</usr/local/texlive
/2013/texmf-dist/fonts/type1/public/inconsolata/Inconsolata.pfb></usr/local/tex
live/2013/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/local/texl
ive/2013/texmf-dist/fonts/type1/urw/helvetic/uhvr8a.pfb></usr/local/texlive/201
3/texmf-dist/fonts/type1/urw/times/utmb8a.pfb></usr/local/texlive/2013/texmf-di
st/fonts/type1/urw/times/utmbi8a.pfb></usr/local/texlive/2013/texmf-dist/fonts/
type1/urw/times/utmr8a.pfb></usr/local/texlive/2013/texmf-dist/fonts/type1/urw/
times/utmr8a.pfb></usr/local/texlive/2013/texmf-dist/fonts/type1/urw/times/utmr
i8a.pfb>
Output written on Rd2.pdf (36 pages, 159796 bytes).
Transcript written on Rd2.log.
This is makeindex, version 2.15 [TeX Live 2013] (kpathsea + Thai support).
Scanning input file ./Rd2.idx....done (110 entries accepted, 0 rejected).
Sorting entries....done (781 comparisons).
Generating output file ./Rd2.ind....done (137 lines written, 1 warning).
Output written in ./Rd2.ind.
Transcript written in ./Rd2.ilg.
This is pdfTeX, Version 3.1415926-2.5-1.40.14 (TeX Live 2013)
 restricted \write18 enabled.
entering extended mode

(/private/var/folders/dl/9ytrkbd570g3x_zht7vw51zc0000gn/T/Rtmp3WxA28/Rbuild1269
668fc7cb/RcppOctave/.Rd2pdf4713/Rd2.tex
LaTeX2e <2011/06/27>
Babel <3.9f> and hyphenation patterns for 78 languages loaded.
(/usr/local/texlive/2013/texmf-dist/tex/latex/base/book.cls
Document Class: book 2007/10/19 v1.4h Standard LaTeX document class
(/usr/local/texlive/2013/texmf-dist/tex/latex/base/bk10.clo))
(/Library/Frameworks/R.framework/Resources/share/texmf/tex/latex/Rd.sty
(/usr/local/texlive/2013/texmf-dist/tex/latex/base/ifthen.sty)
(/usr/local/texlive/2013/texmf-dist/tex/latex/tools/longtable.sty)
(/usr/local/texlive/2013/texmf-dist/tex/latex/tools/bm.sty)
(/usr/local/texlive/2013/texmf-dist/tex/latex/base/alltt.sty)
(/usr/local/texlive/2013/texmf-dist/tex/latex/tools/verbatim.sty)
(/usr/local/texlive/2013/texmf-dist/tex/latex/url/url.sty)
(/usr/local/texlive/2013/texmf-dist/tex/latex/base/textcomp.sty
(/usr/local/texlive/2013/texmf-dist/tex/latex/base/ts1enc.def))
(/usr/local/texlive/2013/texmf-dist/tex/latex/base/fontenc.sty
(/usr/local/texlive/2013/texmf-dist/tex/latex/base/t1enc.def))
(/usr/local/texlive/2013/texmf-dist/tex/latex/psnfss/times.sty)
(/usr/local/texlive/2013/texmf-dist/tex/latex/inconsolata/inconsolata.sty
(/usr/local/texlive/2013/texmf-dist/tex/latex/graphics/keyval.sty))
(/usr/local/texlive/2013/texmf-dist/tex/latex/graphics/color.sty
(/usr/local/texlive/2013/texmf-dist/tex/latex/latexconfig/color.cfg)
(/usr/local/texlive/2013/texmf-dist/tex/latex/pdftex-def/pdftex.def
(/usr/local/texlive/2013/texmf-dist/tex/generic/oberdiek/infwarerr.sty)
(/usr/local/texlive/2013/texmf-dist/tex/generic/oberdiek/ltxcmds.sty)))
(/usr/local/texlive/2013/texmf-dist/tex/latex/hyperref/hyperref.sty
(/usr/local/texlive/2013/texmf-dist/tex/generic/oberdiek/hobsub-hyperref.sty
(/usr/local/texlive/2013/texmf-dist/tex/generic/oberdiek/hobsub-generic.sty))
(/usr/local/texlive/2013/texmf-dist/tex/generic/ifxetex/ifxetex.sty)
(/usr/local/texlive/2013/texmf-dist/tex/latex/oberdiek/auxhook.sty)
(/usr/local/texlive/2013/texmf-dist/tex/latex/oberdiek/kvoptions.sty)
(/usr/local/texlive/2013/texmf-dist/tex/latex/hyperref/pd1enc.def)
(/usr/local/texlive/2013/texmf-dist/tex/latex/latexconfig/hyperref.cfg))

Package hyperref Message: Driver (autodetected): hpdftex.

(/usr/local/texlive/2013/texmf-dist/tex/latex/hyperref/hpdftex.def
(/usr/local/texlive/2013/texmf-dist/tex/latex/oberdiek/rerunfilecheck.sty))

Package hyperref Warning: Option `hyperindex' has already been used,
(hyperref)                setting the option has no effect on input line 361.


Package hyperref Warning: Option `pagebackref' has already been used,
(hyperref)                setting the option has no effect on input line 361.

) (/usr/local/texlive/2013/texmf-dist/tex/latex/base/makeidx.sty)
(/usr/local/texlive/2013/texmf-dist/tex/latex/base/inputenc.sty
(/usr/local/texlive/2013/texmf-dist/tex/latex/base/utf8.def
(/usr/local/texlive/2013/texmf-dist/tex/latex/base/t1enc.dfu)
(/usr/local/texlive/2013/texmf-dist/tex/latex/base/ot1enc.dfu)
(/usr/local/texlive/2013/texmf-dist/tex/latex/base/omsenc.dfu)
(/usr/local/texlive/2013/texmf-dist/tex/latex/base/ts1enc.dfu))
(/usr/local/texlive/2013/texmf-dist/tex/latex/base/latin1.def))
Writing index file Rd2.idx
(./Rd2.aux) (/usr/local/texlive/2013/texmf-dist/tex/latex/base/ts1cmr.fd)
(/usr/local/texlive/2013/texmf-dist/tex/latex/psnfss/t1ptm.fd)
(/usr/local/texlive/2013/texmf-dist/tex/context/base/supp-pdf.mkii
[Loading MPS to PDF converter (version 2006.09.02).]
) (/usr/local/texlive/2013/texmf-dist/tex/latex/hyperref/nameref.sty
(/usr/local/texlive/2013/texmf-dist/tex/generic/oberdiek/gettitlestring.sty))
(./Rd2.out) (./Rd2.out)
(/usr/local/texlive/2013/texmf-dist/tex/latex/inconsolata/t1fi4.fd)
(/usr/local/texlive/2013/texmf-dist/tex/latex/psnfss/ts1ptm.fd)
(/usr/local/texlive/2013/texmf-dist/tex/latex/psnfss/t1phv.fd) (./Rd2.toc
[1{/usr/local/texlive/2013/texmf-var/fonts/map/pdftex/updmap/pdftex.map}])
(/usr/local/texlive/2013/texmf-dist/tex/latex/base/utf8.def) [2]
(/usr/local/texlive/2013/texmf-dist/tex/latex/inconsolata/ts1fi4.fd)
(/usr/local/texlive/2013/texmf-dist/tex/latex/base/utf8.def) [3]
(/usr/local/texlive/2013/texmf-dist/tex/latex/base/utf8.def)
Overfull \hbox (33.30719pt too wide) in paragraph at lines 173--178
\T1/ptm/m/n/10 that al-lows for di-rect ac-cess to Oc-tave func-tions and vari-
ables us-ing calls such as: \T1/fi4/m/n/10 .O$svd(matrix(1:9,3))\T1/ptm/m/n/10 
. 

Overfull \hbox (13.44812pt too wide) in paragraph at lines 207--216
[]\T1/ptm/m/n/10 indices spec-i-fy-ing el-e-ments to ex-tract or re-place. In-d
ices are \T1/fi4/m/n/10 numeric \T1/ptm/m/n/10 or \T1/fi4/m/n/10 character
[4] (/usr/local/texlive/2013/texmf-dist/tex/latex/base/utf8.def) [5]
(/usr/local/texlive/2013/texmf-dist/tex/latex/base/utf8.def)
(/usr/local/texlive/2013/texmf-dist/tex/latex/base/utf8.def) [6]
(/usr/local/texlive/2013/texmf-dist/tex/latex/base/utf8.def) [7] [8]
(/usr/local/texlive/2013/texmf-dist/tex/latex/base/utf8.def)
Overfull \hbox (61.77814pt too wide) in paragraph at lines 573--576
[]\T1/ptm/m/n/10 option that spec-i-fies how the path should be added. Pos-si-b
le val-ues are: \T1/fi4/m/n/10 -begin, 0, -end,  1\T1/ptm/m/n/10 .
[9] (/usr/local/texlive/2013/texmf-dist/tex/latex/base/utf8.def) [10] [11]
(/usr/local/texlive/2013/texmf-dist/tex/latex/base/utf8.def)
Underfull \vbox (badness 10000) has occurred while \output is active [12]
[13] [14] (/usr/local/texlive/2013/texmf-dist/tex/latex/base/utf8.def) [15]
(/usr/local/texlive/2013/texmf-dist/tex/latex/base/utf8.def) [16]
(/usr/local/texlive/2013/texmf-dist/tex/latex/base/utf8.def) [17] [18]
(/usr/local/texlive/2013/texmf-dist/tex/latex/base/utf8.def) [19]
(/usr/local/texlive/2013/texmf-dist/tex/latex/base/utf8.def) [20]
Underfull \vbox (badness 10000) has occurred while \output is active [21]
(/usr/local/texlive/2013/texmf-dist/tex/latex/base/utf8.def) [22]
(/usr/local/texlive/2013/texmf-dist/tex/latex/base/utf8.def) [23]
Overfull \hbox (89.78088pt too wide) in paragraph at lines 1529--1529
 []\T1/fi4/m/n/10 Generates standard-exponential random variatesas R function r
exp -- using the current RNG from R.[] 

Overfull \hbox (24.78088pt too wide) in paragraph at lines 1532--1532
 []\T1/fi4/m/n/10 rande(n, k)   returns n*k matrix with uncorrelated E(0, 1) de
viates drawn in columns[] 

Overfull \hbox (24.78088pt too wide) in paragraph at lines 1533--1533
 []\T1/fi4/m/n/10 rande(n)      returns n*n matrix with uncorrelated E(0, 1) de
viates drawn in columns[] 
(/usr/local/texlive/2013/texmf-dist/tex/latex/base/utf8.def) [24]
Overfull \hbox (29.78088pt too wide) in paragraph at lines 1603--1603
 []\T1/fi4/m/n/10 Generates Gamma random variates as R function rgamma -- using
 the current RNG from R.[] 

Overfull \hbox (59.78088pt too wide) in paragraph at lines 1607--1607
 []\T1/fi4/m/n/10 randg(shape, n)  returns n*n matrix with uncorrelated G(shape
, 1) deviates drawn in columns[] 

Overfull \hbox (74.78088pt too wide) in paragraph at lines 1608--1608
 []\T1/fi4/m/n/10 randg(shape, n, p)  returns n*p matrix with uncorrelated G(sh
ape, 1) deviates drawn in columns[] 

Overfull \hbox (129.78088pt too wide) in paragraph at lines 1609--1609
 []\T1/fi4/m/n/10 randg(shape, n, p, scale)  returns n*p matrix with uncorrelat
ed G(shape, scale) deviates drawn in columns[] 
[25] (/usr/local/texlive/2013/texmf-dist/tex/latex/base/utf8.def)
Overfull \hbox (74.78088pt too wide) in paragraph at lines 1679--1679
 []\T1/fi4/m/n/10 Generates standard-normal random variates as R function rnorm
 -- using the current RNG from R.[] 

Overfull \hbox (34.78088pt too wide) in paragraph at lines 1682--1682
 []\T1/fi4/m/n/10 randn(n, k)   returns a n*k matrix with uncorrelated N(0, 1) 
deviates drawn in columns[] 

Overfull \hbox (29.78088pt too wide) in paragraph at lines 1683--1683
 []\T1/fi4/m/n/10 randn(n)      returns a n*n matrix with uncorrelated N(0, 1) 
deviates draw in columns[] 
[26] (/usr/local/texlive/2013/texmf-dist/tex/latex/base/utf8.def)
Overfull \hbox (34.78088pt too wide) in paragraph at lines 1777--1777
 []\T1/fi4/m/n/10 Generates uniform random variates as R function runif -- usin
g the current RNG from R.[] 
[27]
Overfull \hbox (29.78088pt too wide) in paragraph at lines 1780--1780
 []\T1/fi4/m/n/10 rand(n, k)   returns a n*k matrix with uncorrelated U(0, 1) d
eviates drawn in columns[] 

Overfull \hbox (29.78088pt too wide) in paragraph at lines 1781--1781
 []\T1/fi4/m/n/10 rand(n)      returns a n*n matrix with uncorrelated U(0, 1) d
eviates drawn in columns[] 
(/usr/local/texlive/2013/texmf-dist/tex/latex/base/utf8.def) [28]
(/usr/local/texlive/2013/texmf-dist/tex/latex/base/utf8.def) [29]
(/usr/local/texlive/2013/texmf-dist/tex/latex/base/utf8.def) [30]
(/usr/local/texlive/2013/texmf-dist/tex/latex/base/utf8.def) [31] [32]
(/usr/local/texlive/2013/texmf-dist/tex/latex/base/utf8.def) [33]
(/usr/local/texlive/2013/texmf-dist/tex/latex/base/utf8.def)
(/usr/local/texlive/2013/texmf-dist/tex/latex/base/utf8.def) [34]
(/usr/local/texlive/2013/texmf-dist/tex/latex/base/utf8.def) (./Rd2.ind
[35]

LaTeX Font Warning: Font shape `T1/fi4/m/it' undefined
(Font)              using `T1/fi4/m/n' instead on input line 17.

[36]) (./Rd2.aux)

LaTeX Font Warning: Some font shapes were not available, defaults substituted.

 )
(see the transcript file for additional information)pdfTeX warning (dest): name
{Rfn.system.file} has been referenced but does not exist, replaced by a fixed o
ne

pdfTeX warning (dest): name{Rfn.compareVersion} has been referenced but does no
t exist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.set.seed} has been referenced but does not exis
t, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.runif} has been referenced but does not exist, 
replaced by a fixed one

pdfTeX warning (dest): name{Rfn.rnorm} has been referenced but does not exist, 
replaced by a fixed one

pdfTeX warning (dest): name{Rfn.rgamma} has been referenced but does not exist,
 replaced by a fixed one

pdfTeX warning (dest): name{Rfn.rexp} has been referenced but does not exist, r
eplaced by a fixed one

pdfTeX warning (dest): name{Rfn.Rd2HTML} has been referenced but does not exist
, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.Rd2latex} has been referenced but does not exis
t, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.Rd2txt} has been referenced but does not exist,
 replaced by a fixed one

pdfTeX warning (dest): name{Rfn.substitute} has been referenced but does not ex
ist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.get} has been referenced but does not exist, re
placed by a fixed one

pdfTeX warning (dest): name{Rfn.dimnames} has been referenced but does not exis
t, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.as.integer} has been referenced but does not ex
ist, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.names} has been referenced but does not exist, 
replaced by a fixed one

pdfTeX warning (dest): name{Rfn.backtick} has been referenced but does not exis
t, replaced by a fixed one

pdfTeX warning (dest): name{Rfn.name} has been referenced but does not exist, r
eplaced by a fixed one

pdfTeX warning (dest): name{Rfn.Octave.Rdash.class} has been referenced but doe
s not exist, replaced by a fixed one

{/usr/local/texlive/2013/texmf-dist/fonts/enc/dvips/base/8r.enc}{/usr/local/tex
live/2013/texmf-dist/fonts/enc/dvips/inconsolata/fi4-ec.enc}</usr/local/texlive
/2013/texmf-dist/fonts/type1/public/inconsolata/Inconsolata.pfb></usr/local/tex
live/2013/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/local/texl
ive/2013/texmf-dist/fonts/type1/urw/helvetic/uhvr8a.pfb></usr/local/texlive/201
3/texmf-dist/fonts/type1/urw/times/utmb8a.pfb></usr/local/texlive/2013/texmf-di
st/fonts/type1/urw/times/utmbi8a.pfb></usr/local/texlive/2013/texmf-dist/fonts/
type1/urw/times/utmr8a.pfb></usr/local/texlive/2013/texmf-dist/fonts/type1/urw/
times/utmr8a.pfb></usr/local/texlive/2013/texmf-dist/fonts/type1/urw/times/utmr
i8a.pfb>
Output written on Rd2.pdf (36 pages, 160629 bytes).
Transcript written on Rd2.log.
Saving output to ?/private/var/folders/dl/9ytrkbd570g3x_zht7vw51zc0000gn/T/Rtmp3WxA28/Rbuild1269668fc7cb/RcppOctave/build/RcppOctave.pdf? ...
Done
* creating vignettes ... ERROR
Quitting from lines 353-357 (RcppOctave.Rnw) 
Error: processing vignette ?RcppOctave.Rnw? failed with diagnostics:
RcppOctave - error in Octave function `fun_varargout`:
  usage: Expecting 1 or 3 output variables.
error:   fun_varargout at line 34, column 7
Execution halted


More information about the Rcppoctave-user mailing list