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<span style="font-size:10.5pt;font-family:"Segoe UI",sans-serif;color:#24292E">I'm trying to install on a Centos6.10 system. I am using an updated gcc9.2 compiler that was installed on the system. I've searched the forum and the web and can't seem to find a
solution to this. I did find one recommendation to use static compile but I don't know how to do that with R. Here is what I get when I try to install it:<o:p></o:p></span></p>
<p class="MsoNormal" style="margin-bottom:12.0pt;background:white"><span style="font-size:10.5pt;font-family:"Segoe UI",sans-serif;color:#24292E">R CMD INSTALL -d /share/apps/R/4.0.0/plugin/miniCRAN/src/contrib/Rcpp_1.0.4.6.tar.gz<br>
processing '/share/apps/R/4.0.0/plugin/miniCRAN/src/contrib/Rcpp_1.0.4.6.tar.gz'<br>
a file<o:p></o:p></span></p>
<ul type="disc">
<li class="MsoNormal" style="color:#24292E;mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;mso-list:l0 level1 lfo1;background:white">
<span style="font-size:10.5pt;font-family:"Segoe UI",sans-serif">installing to library '/share/apps/R/4.0.0/plugin'<o:p></o:p></span></li><li class="MsoNormal" style="color:#24292E;margin-top:3.0pt;mso-margin-bottom-alt:auto;mso-list:l0 level1 lfo1;background:white">
<span style="font-size:10.5pt;font-family:"Segoe UI",sans-serif">build_help_types=<o:p></o:p></span></li><li class="MsoNormal" style="color:#24292E;margin-top:3.0pt;mso-margin-bottom-alt:auto;mso-list:l0 level1 lfo1;background:white">
<span style="font-size:10.5pt;font-family:"Segoe UI",sans-serif">DBG: 'R CMD INSTALL' now doing do_install()<o:p></o:p></span></li><li class="MsoNormal" style="color:#24292E;margin-top:3.0pt;mso-margin-bottom-alt:auto;mso-list:l0 level1 lfo1;background:white">
<span style="font-size:10.5pt;font-family:"Segoe UI",sans-serif">created lock directory '/share/apps/R/4.0.0/plugin/00LOCK-Rcpp'<o:p></o:p></span></li><li class="MsoNormal" style="color:#24292E;margin-top:3.0pt;mso-margin-bottom-alt:auto;mso-list:l0 level1 lfo1;background:white">
<span style="font-size:10.5pt;font-family:"Segoe UI",sans-serif">installing <i>source</i> package 'Rcpp' ...<br>
** package 'Rcpp' successfully unpacked and MD5 sums checked<br>
** using staged installation<br>
** libs<br>
about to run R CMD SHLIB -o Rcpp.so api.cpp attributes.cpp barrier.cpp date.cpp module.cpp rcpp_init.cpp<br>
/share/apps/gcc/9.2.0/bin/gcc -m64 -I"/share/apps/R/4.0.0/lib64/R/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches
-m64 -mtune=generic -c api.cpp -o api.o<br>
/share/apps/gcc/9.2.0/bin/gcc -m64 -I"/share/apps/R/4.0.0/lib64/R/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches
-m64 -mtune=generic -c attributes.cpp -o attributes.o<br>
/share/apps/gcc/9.2.0/bin/gcc -m64 -I"/share/apps/R/4.0.0/lib64/R/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches
-m64 -mtune=generic -c barrier.cpp -o barrier.o<br>
/share/apps/gcc/9.2.0/bin/gcc -m64 -I"/share/apps/R/4.0.0/lib64/R/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches
-m64 -mtune=generic -c date.cpp -o date.o<br>
/share/apps/gcc/9.2.0/bin/gcc -m64 -I"/share/apps/R/4.0.0/lib64/R/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches
-m64 -mtune=generic -c module.cpp -o module.o<br>
/share/apps/gcc/9.2.0/bin/gcc -m64 -I"/share/apps/R/4.0.0/lib64/R/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches
-m64 -mtune=generic -c rcpp_init.cpp -o rcpp_init.o<br>
/share/apps/gcc/9.2.0/bin/gcc -m64 -shared -L/share/apps/update/lib -o Rcpp.so api.o attributes.o barrier.o date.o module.o rcpp_init.o<br>
installing to /share/apps/R/4.0.0/plugin/00LOCK-Rcpp/00new/Rcpp/libs<br>
** R<br>
** inst<br>
** byte-compile and prepare package for lazy loading<br>
** help<br>
*** installing help indices<br>
** building package indices<br>
** installing vignettes<br>
** testing if installed package can be loaded from temporary location<br>
Error: package or namespace load failed for 'Rcpp' in dyn.load(file, DLLpath = DLLpath, ...):<br>
unable to load shared object '/share/apps/R/4.0.0/plugin/00LOCK-Rcpp/00new/Rcpp/libs/Rcpp.so':<br>
/share/apps/R/4.0.0/plugin/00LOCK-Rcpp/00new/Rcpp/libs/Rcpp.so: undefined symbol: _ZTVN10__cxxabiv120__si_class_type_infoE<br>
Error: loading failed<br>
Execution halted<br>
ERROR: loading failed<o:p></o:p></span></li><li class="MsoNormal" style="color:#24292E;margin-top:3.0pt;mso-margin-bottom-alt:auto;mso-list:l0 level1 lfo1;background:white">
<span style="font-size:10.5pt;font-family:"Segoe UI",sans-serif">removing '/share/apps/R/4.0.0/plugin/Rcpp'<o:p></o:p></span></li></ul>
<p class="MsoNormal" style="mso-margin-bottom-alt:auto;background:white"><span style="font-size:10.5pt;font-family:"Segoe UI",sans-serif;color:#24292E">Also here is my Makevars file<br>
CXX = /share/apps/gcc/9.2.0/bin/gcc -m64<br>
CXXCPP = $(CXX) -E<br>
CXXFLAGS = -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic $(LTO)<br>
CXXPICFLAGS = -fpic<br>
CXX98 = /share/apps/gcc/9.2.0/bin/g++ -m64<br>
CXX98FLAGS = -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic<br>
CXX98PICFLAGS = -fpic<br>
CXX98STD =<br>
CXX11 = /share/apps/gcc/9.2.0/bin/g++ -m64<br>
CXX11FLAGS = -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions --param=ssp-buffer-size=4 -m64 -mtune=generic -std=gnu++0x<br>
CXX11PICFLAGS = -fpic<br>
CXX11STD =<br>
LD_LIBRARY_PATH=/share/apps/gcc/9.2.0/lib:/share/apps/gcc/9.2.0/lib64:/opt/openmpi/lib:/share/apps/update/lib:/opt/python/lib<o:p></o:p></span></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
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