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<p class="xxmsonormal"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D">Hi devs,<o:p></o:p></span></p>
<p class="xxmsonormal"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D"><o:p> </o:p></span></p>
<p class="xxmsonormal"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D">Platform – Unix<o:p></o:p></span></p>
<p class="xxmsonormal"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D">R version 3.4 and 3.5
<o:p></o:p></span></p>
<p class="xxmsonormal"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D">Errors for –fPIC installation for two packages:<o:p></o:p></span></p>
<p class="xxmsonormal"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D"><o:p> </o:p></span></p>
<p class="xxmsonormal"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D">1)<o:p></o:p></span></p>
<p class="xxmsonormal"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D">I’m using r3.5 to install simplexreg on my local as:<o:p></o:p></span></p>
<p class="xxmsonormal"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D"><o:p> </o:p></span></p>
<p class="xxmsonormal"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D">/mnt/mfs/cluster/bin/R-3.5/bin/R CMD INSTALL -l ./ simplexreg_1.3.tar.gz</span><o:p></o:p></p>
<p class="xxmsonormal"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D">When I do it, I get error as follows:<o:p></o:p></span></p>
<p class="xxmsonormal"><o:p> </o:p></p>
<p class="xxmsonormal"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;background:yellow">* installing *source* package ‘simplexreg’ ...</span><o:p></o:p></p>
<p class="xxmsonormal"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;background:yellow">** package ‘simplexreg’ successfully unpacked and MD5 sums checked</span><o:p></o:p></p>
<p class="xxmsonormal"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;background:yellow">** libs</span><o:p></o:p></p>
<p class="xxmsonormal"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;background:yellow">g++ -I"/mnt/mfs/cluster/bin/R-3.5/include" -DNDEBUG -I/gsl/win64/include -I/usr/local/include -fpic -g -O2 -c sim.gee.cpp -o sim.gee.o</span><o:p></o:p></p>
<p class="xxmsonormal"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;background:yellow">g++ -shared -L/usr/local/lib -o simplexreg.so sim.gee.o -L/gsl/win64/lib -lgsl -lgslcblas -lm</span><o:p></o:p></p>
<p class="xxmsonormal"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;background:yellow">/usr/bin/ld: /usr/local/lib/libgslcblas.a(xerbla.o): relocation R_X86_64_PC32 against symbol `stderr@@GLIBC_2.2.5' can not be used when making
a shared object; recompile with -fPIC</span><o:p></o:p></p>
<p class="xxmsonormal"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;background:yellow">/usr/bin/ld: final link failed: Bad value</span><o:p></o:p></p>
<p class="xxmsonormal"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;background:yellow">collect2: error: ld returned 1 exit status</span><o:p></o:p></p>
<p class="xxmsonormal"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;background:yellow">/mnt/mfs/cluster/bin/R-3.5/share/make/shlib.mk:6: recipe for target 'simplexreg.so' failed</span><o:p></o:p></p>
<p class="xxmsonormal"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;background:yellow">make: *** [simplexreg.so] Error 1</span><o:p></o:p></p>
<p class="xxmsonormal"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;background:yellow">ERROR: compilation failed for package ‘simplexreg’</span><o:p></o:p></p>
<p class="xxmsonormal"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D"> </span><o:p></o:p></p>
<p class="MsoNormal">I get same error even when I try with R 3.4.<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">2)<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="xxmsonormal"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D">I’m using r3.5 to install RcppGSL on my local as:<o:p></o:p></span></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal"><span style="color:#1F497D">/mnt/mfs/cluster/bin/R-3.5/bin/R CMD INSTALL -l ./ RcppGSL_0.3.6.tar.gz<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color:#1F497D"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="color:#1F497D;background:yellow;mso-highlight:yellow">** libs<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color:#1F497D;background:yellow;mso-highlight:yellow">g++ -I"/mnt/mfs/cluster/bin/R-3.5/include" -DNDEBUG -I/usr/include -I../inst/include -I"/mnt/mfs/cluster/bin/R-3.5/library/Rcpp/include" -I/usr/local/include -fpic -g
-O2 -c RcppExports.cpp -o RcppExports.o<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color:#1F497D;background:yellow;mso-highlight:yellow">g++ -I"/mnt/mfs/cluster/bin/R-3.5/include" -DNDEBUG -I/usr/include -I../inst/include -I"/mnt/mfs/cluster/bin/R-3.5/library/Rcpp/include" -I/usr/local/include -fpic -g
-O2 -c fastLm.cpp -o fastLm.o<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color:#1F497D;background:yellow;mso-highlight:yellow">gcc -I"/mnt/mfs/cluster/bin/R-3.5/include" -DNDEBUG -I/usr/include -I../inst/include -I"/mnt/mfs/cluster/bin/R-3.5/library/Rcpp/include" -I/usr/local/include -fpic -g
-O2 -c init.c -o init.o<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color:#1F497D;background:yellow;mso-highlight:yellow">g++ -I"/mnt/mfs/cluster/bin/R-3.5/include" -DNDEBUG -I/usr/include -I../inst/include -I"/mnt/mfs/cluster/bin/R-3.5/library/Rcpp/include" -I/usr/local/include -fpic -g
-O2 -c setErrorHandler.cpp -o setErrorHandler.o<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color:#1F497D;background:yellow;mso-highlight:yellow">g++ -shared -L/usr/local/lib -o RcppGSL.so RcppExports.o fastLm.o init.o setErrorHandler.o -L/usr/lib/x86_64-linux-gnu -lgsl -lgslcblas -lm<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color:#1F497D;background:yellow;mso-highlight:yellow">/usr/bin/ld: /usr/local/lib/libgslcblas.a(xerbla.o): relocation R_X86_64_PC32 against symbol `stderr@@GLIBC_2.2.5' can not be used when making a shared object; recompile
with -fPIC<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color:#1F497D;background:yellow;mso-highlight:yellow">/usr/bin/ld: final link failed: Bad value<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color:#1F497D;background:yellow;mso-highlight:yellow">collect2: error: ld returned 1 exit status<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color:#1F497D;background:yellow;mso-highlight:yellow">/mnt/mfs/cluster/bin/R-3.5/share/make/shlib.mk:6: recipe for target 'RcppGSL.so' failed<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color:#1F497D;background:yellow;mso-highlight:yellow">make: *** [RcppGSL.so] Error 1<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color:#1F497D;background:yellow;mso-highlight:yellow">ERROR: compilation failed for package ‘RcppGSL’<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color:#1F497D"><o:p> </o:p></span></p>
<p class="MsoNormal">I get the error with R 3.4 too.<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">May I know how to bypass this error?<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">Thanks,<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
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