\documentclass[10pt]{article}
%\VignetteIndexEntry{Rcpp-modules}
\usepackage{vmargin}
\setmargrb{0.75in}{0.75in}{0.75in}{0.75in}

\usepackage{color, alltt}
\usepackage[authoryear,round,longnamesfirst]{natbib}
\usepackage[colorlinks]{hyperref}
\definecolor{link}{rgb}{0,0,0.3}	%% next few lines courtesy of RJournal.sty
\hypersetup{
    colorlinks,%
    citecolor=link,%
    filecolor=link,%
    linkcolor=link,%
    urlcolor=link
}

\newcommand{\proglang}[1]{\textsf{#1}}
\newcommand{\pkg}[1]{{\fontseries{b}\selectfont #1}}

<<echo=FALSE,print=FALSE>>=
require( inline )
require( Rcpp )
prettyVersion <- packageDescription("Rcpp")$Version
prettyDate <- format(Sys.Date(), "%B %e, %Y")
@

\author{Dirk Eddelbuettel \and Romain Fran\c{c}ois}
\title{Exposing \proglang{C++} functions and classes with \pkg{Rcpp} modules}
\date{\pkg{Rcpp} version \Sexpr{prettyVersion} as of \Sexpr{prettyDate}}

<<echo=FALSE>>=
link <- function( f, package, text = f, root = "http://finzi.psych.upenn.edu/R/library/" ) {
	h <- if( missing(package) ) {
		as.character( help( f ) )
	} else {
		as.character( help( f, package = paste( package, sep = "" ) ) )
	}
	if( ! length(h) ) {
		sprintf( "\\\\textbf{%s}", f )
	} else {
		rx <- "^.*/([^/]*?)/help/(.*?)$"
		package <- sub( rx, "\\1", h, perl = TRUE )
		page <- sub( rx, "\\2", h, perl = TRUE )
		sprintf( "\\\\href{%s%s/html/%s.html}{\\\\texttt{%s}}", root, package, page, text )
	}
}
linkS4class <- function( cl, package, text = cl, root = "http://finzi.psych.upenn.edu/R/library/" ) {
	link( sprintf("%s-class", cl), package, text, root )
}
@

\begin{document}
\maketitle

\abstract{
  \noindent
  This note discusses \textsl{Rcpp modules}. \textsl{Rcpp modules} allow programmers to
  expose \proglang{C++} functions and classes to \proglang{R} with relative
  ease.  \textsl{Rcpp modules} are inspired from the \pkg{Boost.Python}
  \proglang{C++} library \citep{Abrahams+Grosse-Kunstleve:2003:Boost.Python}
  which provides similar features for \proglang{Python}.
}

\section{Motivation}

Exposing \proglang{C++} functionality to \proglang{R} is greatly facilitated
by the \pkg{Rcpp} package and its underlying \proglang{C++} library
\citep{CRAN:Rcpp,JSS:Rcpp}. \pkg{Rcpp} smoothes many of the rough edges in
\proglang{R} and \proglang{C++} integration by replacing the traditional
\proglang{R} Application Programming Interface (API) described in
`\textsl{Writing R Extensions}' \citep{R:Extensions} with a consistent set of \proglang{C++}
classes. The `\textsl{Rcpp-introduction}' vignette \citep{CRAN:Rcpp,JSS:Rcpp} describes the API and
provides an introduction to using \pkg{Rcpp}.

These \pkg{Rcpp} facilities offer a lot of assistance to the programmer
wishing to interface \proglang{R} and \proglang{C++}. At the same time, these
facilities are limited as they operate on a function-by-function basis. The
programmer has to implement a \Sexpr{link(".Call")} compatible function (to
conform to the \proglang{R} API) using classes of the \pkg{Rcpp} API as
described in the next section.

\subsection{Exposing functions using \pkg{Rcpp}}

Exposing existing \proglang{C++} functions to \proglang{R} through \pkg{Rcpp}
usually involves several steps. One approach is to write an additional wrapper
function that is responsible for converting input objects to the appropriate
types, calling the actual worker function and converting the results back to
a suitable type that can be returned to \proglang{R} (\texttt{SEXP}).
Consider the \texttt{norm} function below:

<<lang=cpp>>=
double norm( double x, double y ) {
    return sqrt( x*x + y*y );
}
@

This simple function does not meet the requirements set by the \texttt{.Call}
convention, so it cannot be called directly by \proglang{R}. Exposing the
function involves writing a simple wrapper function
that does match the \texttt{.Call} requirements. \pkg{Rcpp} makes this easy.

<<lang=cpp>>=
using namespace Rcpp;
RcppExport SEXP norm_wrapper(SEXP x_, SEXP y_) {
    // step 0: convert input to C++ types
    double x = as<double>(x_), y = as<double>(y_);

    // step 1: call the underlying C++ function
    double res = norm( x, y );

    // step 2: return the result as a SEXP
    return wrap( res );
}
@

Here we use the (templated) \pkg{Rcpp} converter \texttt{as()} which can
transform from a \texttt{SEXP} to a number of different \proglang{C++} and
\pkg{Rcpp} types. The \pkg{Rcpp} function \texttt{wrap()} offers the opposite
functionality and converts many known types to a \texttt{SEXP}.

This process is simple enough, and is used by a number of CRAN packages.
However, it requires direct involvement from the programmer, which quickly
becomes tiresome when many functions are involved. \textsl{Rcpp modules}
provides a much more elegant and unintrusive way to expose \proglang{C++}
functions such as the \texttt{norm} function shown above to \proglang{R}.

\subsection{Exposing classes using Rcpp}

Exposing \proglang{C++} classes or structs is even more of a challenge because it
requires writing glue code for each member function that is to be exposed.

Consider the simple \texttt{Uniform} class below:

<<lang=cpp>>=
class Uniform {
public:
    Uniform(double min_, double max_) : min(min_), max(max_) {}

    NumericVector draw(int n) {
        RNGScope scope;
        return runif( n, min, max );
    }

private:
    double min, max;
};
@

To use this class from R, we at least need to expose the constructor and
the \texttt{draw} method. External pointers
\citep{R:Extensions} are the perfect vessel for this, and using the
\texttt{Rcpp:::XPtr} template from \pkg{Rcpp} we can expose the class
with these two functions:

<<lang=cpp>>=
using namespace Rcpp;

/// create an external pointer to a Uniform object
RcppExport SEXP Uniform__new(SEXP min_, SEXP max_) {
    // convert inputs to appropriate C++ types
    double min = as<double>(min_), max = as<double>(max_);

    // create a pointer to an Uniform object and wrap it
    // as an external pointer
    Rcpp::XPtr<Uniform> ptr( new Uniform( min, max ), true );

    // return the external pointer to the R side
    return ptr;
}

/// invoke the draw method
RcppExport SEXP Uniform__draw( SEXP xp, SEXP n_ ) {
    // grab the object as a XPtr (smart pointer) to Uniform
    Rcpp::XPtr<Uniform> ptr(xp);

    // convert the parameter to int
    int n = as<int>(n_);

    // invoke the function
    NumericVector res = ptr->draw( n );

    // return the result to R
    return res;
}
@

As it is generally a bad idea to expose external pointers `as is',
they usually get wrapped as a slot of an S4 class.

<<echo=FALSE,results=hide>>=
f1 <- cxxfunction( , "", includes = '
using namespace Rcpp;

class Uniform {
public:
    Uniform(double min_, double max_) : min(min_), max(max_) {}

    NumericVector draw(int n) {
        RNGScope scope;
        return runif( n, min, max );
    }

private:
    double min, max;
};

/// create an external pointer to a Uniform object
RcppExport SEXP Uniform__new(SEXP min_, SEXP max_) {
    // convert inputs to appropriate C++ types
    double min = as<double>(min_), max = as<double>(max_);

    // create a pointer to an Uniform object and wrap it
    // as an external pointer
    Rcpp::XPtr<Uniform> ptr( new Uniform( min, max ), true );

    // return the external pointer to the R side
    return ptr;
}

/// invoke the draw method
RcppExport SEXP Uniform__draw( SEXP xp, SEXP n_ ) {
    // grab the object as a XPtr (smart pointer) to Uniform
    Rcpp::XPtr<Uniform> ptr(xp);

    // convert the parameter to int
    int n = as<int>(n_);

    // invoke the function
    NumericVector res = ptr->draw( n );

    // return the result to R
    return res;
}
', plugin = "Rcpp" )
getDynLib( f1 )
@

<<>>=
setClass( "Uniform", representation( pointer = "externalptr" ) )

# helper
Uniform_method <- function(name) {
    paste( "Uniform", name, sep = "__" )
}

# syntactic sugar to allow object$method( ... )
setMethod( "$", "Uniform", function(x, name ) {
    function(...) .Call( Uniform_method(name) , x@pointer, ... )
} )
# syntactic sugar to allow new( "Uniform", ... )
setMethod( "initialize", "Uniform", function(.Object, ...) {
    .Object@pointer <- .Call( Uniform_method("new"), ... )
    .Object
} )

u <- new( "Uniform", 0, 10 )
u$draw( 10L )
@

\pkg{Rcpp} considerably simplifies the code that would
be involved for using external pointers with the traditional \proglang{R} API.
Yet this still involves a lot of mechanical code that quickly
becomes hard to maintain and error prone.
\textsl{Rcpp modules} offer an elegant way to expose the \texttt{Uniform}
class in a way that makes both the internal
\proglang{C++} code and the \proglang{R} code easier.



\section{Rcpp modules}

The design of Rcpp modules has been influenced by \proglang{Python} modules which are generated by the
\texttt{Boost.Python} library \citep{Abrahams+Grosse-Kunstleve:2003:Boost.Python}.
Rcpp modules provide a convenient and easy-to-use way
to expose \proglang{C++} functions and classes to \proglang{R}, grouped
together in a single entity.

A Rcpp module is created in a \texttt{cpp} file using the \texttt{RCPP\_MODULE}
macro, which then provides declarative code of what the module
exposes to \proglang{R}.

\subsection{Exposing \proglang{C++} functions using Rcpp modules}

Consider the \texttt{norm} function from the previous section.
We can expose it to \proglang{R} :

<<lang=cpp>>=
using namespace Rcpp;

double norm( double x, double y ) {
    return sqrt( x*x + y*y );
}

RCPP_MODULE(mod) {
    function( "norm", &norm );
}
@

The code creates an Rcpp module called \texttt{mod}
that exposes the \texttt{norm} function. \pkg{Rcpp} automatically
deduces the conversions that are needed for input and output. This alleviates
the need for a wrapper function using either \pkg{Rcpp} or the \proglang{R} API.

For this brief example, assume the code has been compiled as ``test.so'' using R CMD SHLIB. In general, however, we recommend the use of packages.

On the \proglang{R} side, the module is retrieved by using the
\Sexpr{link("Module")} function from \pkg{Rcpp}:

<<eval=FALSE>>=
require( Rcpp )
mod <- Module( "mod", PACKAGE=dyn.load( "test.so" ) )
mod$norm( 3, 4 )
@

A module can contain any number of calls to \texttt{function} to register
many internal functions to \proglang{R}. For example, these 6 functions :

<<lang=cpp>>=
std::string hello() {
    return "hello";
}

int bar( int x) {
    return x*2;
}

double foo( int x, double y) {
    return x * y;
}

void bla( ) {
    Rprintf( "hello\\n" );
}

void bla1( int x) {
    Rprintf( "hello (x = %d)\\n", x );
}

void bla2( int x, double y) {
    Rprintf( "hello (x = %d, y = %5.2f)\\n", x, y );
}
@

It can be exposed with the following minimal code:

<<lang=cpp>>=
RCPP_MODULE(yada) {
    using namespace Rcpp;

    function( "hello" , &hello );
    function( "bar"   , &bar   );
    function( "foo"   , &foo   );
    function( "bla"   , &bla   );
    function( "bla1"  , &bla1   );
    function( "bla2"  , &bla2   );
}
@

Assuming this code is contained in package myPackage, then the functions are available in \proglang{R} via:

<<eval=FALSE>>=
require( Rcpp )
require( myPackage )     ## is this sufficient??
yada <- Module( "yada" ) ## does this need to indicate the package??
yada$bar( 2L )
yada$foo( 2L, 10.0 )
yada$hello()
yada$bla()
yada$bla1( 2L)
yada$bla2( 2L, 5.0 )
@

The requirements for a function to be exposed to \proglang{R} via Rcpp modules
are:
\begin{itemize}
\item The function takes between 0 and 65 parameters.
\item The type of each input parameter must be manageable by the \texttt{Rcpp::as}
template.
\item The return type of the function must be either \texttt{void} or any type that
can be managed by the \texttt{Rcpp::wrap} template.
\item The function name itself has to be unique in the module.
  In other words, no two functions with
  the same name but different signatures are allowed. C++ allows overloading
  functions. This might be added in future versions of modules.
\end{itemize}

\subsubsection{Documentation for exposed functions using Rcpp modules}

In addition to the name of the function and the function pointer, it is possible
to pass a short description of the function as the third parameter of \texttt{function}.

<<lang=cpp>>=
using namespace Rcpp;

double norm( double x, double y ) {
    return sqrt( x*x + y*y );
}

RCPP_MODULE(mod) {
    function( "norm", &norm, "Provides a simple vector norm" );
}
@

The description is used when displaying the function to the R prompt:

<<echo=FALSE>>=
fx <- cxxfunction( , "", includes = '

using namespace Rcpp;

double norm( double x, double y ) {
    return sqrt( x*x + y*y );
}

RCPP_MODULE(mod) {
    function( "norm", &norm, "Provides a simple vector norm" );
}
', plugin = "Rcpp" )
mod <- Module( "mod", getDynLib( fx ) )
@
<<>>=
show( mod$norm )
@

\subsubsection{Formal arguments specification}

\texttt{function} also gives the possibility to specify the formal arguments
of the R function that encapsulates the C++ function, by passing
a \texttt{Rcpp::List} after the function pointer.

<<lang=cpp>>=
using namespace Rcpp;

double norm( double x, double y ) {
    return sqrt( x*x + y*y );
}

RCPP_MODULE(mod_formals) {
     function( "norm",
              &norm,
              List::create( _["x"] = 0.0, _["y"] = 0.0 ),
              "Provides a simple vector norm");
}
@

A simple usage example is provided below:

<<echo=FALSE,results=hide>>=
fx_form <- cxxfunction( , '', includes = '
using namespace Rcpp;

double norm( double x, double y ) {
    return sqrt( x*x + y*y );
}

RCPP_MODULE(mod_formals) {
     function( "norm", &norm,
              List::create( _["x"] = 0.0, _["y"] = 0.0 ),
              "Provides a simple vector norm");
}
', plugin = "Rcpp" )
mod <- Module( "mod_formals", getDynLib( fx_form ), mustStart = TRUE )
@
<<>>=
norm <- mod$norm
norm()
norm( y = 2 )
norm( x = 2, y = 3 )
args( norm )
@

To set formal arguments without default values, simply omit the rhs.

<<lang=cpp>>=
using namespace Rcpp;

double norm( double x, double y ) {
    return sqrt( x*x + y*y );
}

RCPP_MODULE(mod_formals2) {
    function( "norm", &norm,
             List::create( _["x"], _["y"] = 0.0 ),
             "Provides a simple vector norm");
}
@

This can be used as follows:

<<echo=FALSE,results=hide>>=
fx_form2 <- cxxfunction( , '', includes = '
using namespace Rcpp;

double norm( double x, double y ) {
    return sqrt( x*x + y*y );
}

RCPP_MODULE(mod_formals2) {
        function( "norm", &norm,
                 List::create( _["x"], _["y"] = 0.0 ),
                 "Provides a simple vector norm");
}
', plugin = "Rcpp" )
mod <- Module( "mod_formals2", getDynLib( fx_form2 ), mustStart = TRUE )
@
<<>>=
norm <- mod$norm
args( norm )
@

The ellipsis (\texttt{...}) can be used to denote that additional arguments
are optional; it does not take a default value.

<<lang=cpp>>=
using namespace Rcpp;

double norm( double x, double y ) {
    return sqrt( x*x + y*y );
}

RCPP_MODULE(mod_formals3) {
    function( "norm", &norm,
             List::create( _["x"], _["..."] ),
             "documentation for norm");
}
@
<<echo=FALSE,results=hide>>=
fx_form3 <- cxxfunction( , '', includes = '
using namespace Rcpp;

double norm( double x, double y ) {
    return sqrt( x*x + y*y );
}

RCPP_MODULE(mod_formals3) {
    function( "norm", &norm,
             List::create( _["x"] , _["..."]  ),
             "documentation for norm");
}
', plugin = "Rcpp" )
mod <- Module( "mod_formals3", getDynLib( fx_form3 ), mustStart = TRUE )
@
<<>>=
norm <- mod$norm
args( norm )
@


\subsection{Exposing \proglang{C++} classes using Rcpp modules}

Rcpp modules also provide a mechanism for exposing \proglang{C++} classes, based
on the reference classes introduced in R 2.12.0.

\subsubsection{Initial example}

A class is exposed using the \texttt{class\_} keyword. The \texttt{Uniform}
class may be exposed to \proglang{R} as follows:

<<lang=cpp>>=
using namespace Rcpp;
class Uniform {
public:
    Uniform(double min_, double max_) : min(min_), max(max_) {}

    NumericVector draw(int n) const {
        RNGScope scope;
        return runif( n, min, max );
    }

    double min, max;
};

double range( Uniform* w) {
    return w->max - w->min;
}

RCPP_MODULE(unif_module) {

    class_<Uniform>( "Uniform" )

    .constructor<double,double>()

    .field( "min", &Uniform::min )
    .field( "max", &Uniform::max )

    .method( "draw", &Uniform::draw )
    .method( "range", &range )
    ;

}
@

<<results=hide,echo=FALSE>>=
fx_unif <- cxxfunction( , "", includes = '
using namespace Rcpp;
class Uniform {
public:
    Uniform(double min_, double max_) : min(min_), max(max_) {}

    NumericVector draw(int n) const {
        RNGScope scope;
        return runif( n, min, max );
    }

    double min, max;
};

double range( Uniform* w) {
    return w->max - w->min;
}

RCPP_MODULE(unif_module) {

    class_<Uniform>( "Uniform" )

    .constructor<double,double>()

    .field( "min", &Uniform::min )
    .field( "max", &Uniform::max )

    .method( "draw", &Uniform::draw )
    .method( "range", &range )
    ;

}
', plugin = "Rcpp" )
unif_module <- Module( "unif_module", getDynLib(fx_unif ) )
@
<<>>=
Uniform <- unif_module$Uniform
u <- new( Uniform, 0, 10 )
u$draw( 10L )
u$range()
u$max <- 1
u$range()
u$draw( 10 )
@

\texttt{class\_} is templated by the \proglang{C++} class or struct
that is to be exposed to \proglang{R}.
The parameter of the \texttt{class\_<Uniform>} constructor is the name we will
use on the \proglang{R} side. It usually makes sense to use the same name as the class
name. While this is not enforced, it might be useful when exposing a class
generated from a template.

Then constructors, fields and methods are exposed.

\subsubsection{Exposing constructors using Rcpp modules}

Public constructors that take from 0 and 6 parameters can be exposed
to the R level using the \texttt{.constuctor} template method of \texttt{.class\_}.

Optionally, \texttt{.constructor} can take a description as the first argument.

<<lang=cpp>>=
    .constructor<double,double>("sets the min and max value of the distribution")
@

Also, the second argument can be a function pointer (called validator)
matching the following type :

<<lang=cpp>>=
typedef bool (*ValidConstructor)(SEXP*,int);
@

The validator can be used to implement dispatch to the appropriate constructor,
when multiple constructors taking the same number of arguments are exposed.
The default validator always accepts the constructor as valid if it is passed
the appropriate number of arguments. For example, with the call above, the default
validator accepts any call from R with two \texttt{double} arguments (or
arguments that can be cast to \texttt{double}).

TODO: include validator example here

\subsubsection{Exposing fields and properties}

\texttt{class\_} has three ways to expose fields and properties, as
illustrated in the example below :

<<lang=cpp>>=
using namespace Rcpp;
class Foo {
    public:
        Foo( double x_, double y_, double z_ ):
            x(x_), y(y_), z(z_) {}

        double x;
        double y;

        double get_z() { return z; }
        void set_z( double z_ ) { z = z_; }

    private:
        double z;
};

RCPP_MODULE(mod_foo) {
    class_<Foo>( "Foo" )

    .constructor<double,double,double>()

    .field( "x", &Foo::x )
    .field_readonly( "y", &Foo::y )

    .property( "z", &Foo::get_z, &Foo::set_z )
    ;
}
@

The \texttt{.field} method exposes a public field with read/write access from R.
\texttt{field} accepts an extra parameter to give a short description of the
field:

<<lang=cpp>>=
    .field( "x", &Foo::x, "documentation for x" )
@

The \texttt{.field\_readonly} exposes a public field with read-only access from R.
It also accepts the description of the field.

<<lang=cpp>>=
    .field_readonly( "y", &Foo::y, "documentation for y" )
@

The \texttt{.property} method allows indirect access to fields through
a getter and a setter. The setter is optional, and the property is considered
read-only if the setter is not supplied. A description of the property is also
allowed:

<<lang=cpp>>=
    // with getter and setter
    .property( "z", &Foo::get_z, &Foo::set_z, "Documentation for z" )

    // with only getter
    .property( "z", &Foo::get_z, "Documentation for z" )
@

The type of the field (\textbf{T}) is deduced from the return type of the getter, and if a
setter is given its unique parameter should be of the same type.

Getters can be member functions taking no parameter and returning a \textbf{T}
(for example \texttt{get\_z} above), or
a free function taking a pointer to the exposed
class and returning a \textbf{T}, for example:

<<lang=cpp>>=
double z_get( Foo* foo ) { return foo->get_z(); }
@

Setters can be either a member function taking a \texttt{T} and returning void, such
as \texttt{set\_z} above, or a free function taking a pointer to the target
class and a \textbf{T} :

<<lang=cpp>>=
void z_set( Foo* foo, double z ) { foo->set_z(z); }
@

Using properties gives more flexibility in case field access has to be tracked
or has impact on other fields. For example, this class keeps track of how many times
the \texttt{x} field is read and written.

<<lang=cpp>>=
class Bar {
    public:

        Bar(double x_) : x(x_), nread(0), nwrite(0) {}

        double get_x( ) {
            nread++;
            return x;
        }

        void set_x( double x_) {
            nwrite++;
            x = x_;
        }

        IntegerVector stats() const {
            return IntegerVector::create(
                _["read"] = nread,
                _["write"] = nwrite
            );
        }

    private:
        double x;
        int nread, nwrite;
};

RCPP_MODULE(mod_bar) {
    class_<Bar>( "Bar" )

    .constructor<double>()

    .property( "x", &Bar::get_x, &Bar::set_x )
    .method( "stats", &Bar::stats )
    ;
}
@

Here is a simple usage example:

<<echo=FALSE,results=hide>>=
fx_bar <- cxxfunction( , "", includes = '
class Bar {
    public:

        Bar(double x_) : x(x_), nread(0), nwrite(0) {}

        double get_x( ) {
            nread++;
            return x;
        }

        void set_x( double x_) {
            nwrite++;
            x = x_;
        }

        IntegerVector stats() const {
            return IntegerVector::create(
                _["read"] = nread,
                _["write"] = nwrite
            );
        }

    private:
        double x;
        int nread, nwrite;
};

RCPP_MODULE(mod_bar) {
    class_<Bar>( "Bar" )

        .constructor<double>()

        .property( "x", &Bar::get_x, &Bar::set_x )
        .method( "stats", &Bar::stats )
    ;
}
', plugin = "Rcpp" )
mod_bar <- Module( "mod_bar", getDynLib( fx_bar ) )
@
<<>>=
Bar <- mod_bar$Bar
b <- new( Bar, 10 )
b$x + b$x
b$stats()
b$x <- 10
b$stats()
@

\subsubsection{Exposing methods using Rcpp modules}

\texttt{class\_} has several overloaded and templated \texttt{.method}
functions allowing the programmer to expose a method associated with the class.

A legitimate method to be exposed by \texttt{.method} can be:
\begin{itemize}
\item A public member function of the class, either const or non const, that
returns void or any type that can be handled by \texttt{Rcpp::wrap}, and that
takes between 0 and 65 parameters whose types can be handled by \texttt{Rcpp::as}.
\item A free function that takes a pointer to the target class as its first
parameter, followed by 0 or more (up to 65) parameters that can be handled by
\texttt{Rcpp::as} and returning a type that can be handled by \texttt{Rcpp::wrap}
or void.
\end{itemize}

\paragraph{Documenting methods} \texttt{.method} can also include
a short documentation of the method, after the
method (or free function) pointer.

<<lang=cpp>>=
    .method( "stats", &Bar::stats,
        "vector indicating the number of times x has been read and written" )
@

TODO: mention overloading, need good example.


\paragraph{Const and non-const member functions}

\texttt{method} is able to expose both \texttt{const} and \texttt{non const}
member functions of a class. There are however situations where
a class defines two versions of the same method, differing only in their
signature by the \texttt{const}-ness. It is for example the case of the
member functions \texttt{back} of the \texttt{std::vector} template from
the STL.

<<lang=cpp>>=
reference back ( );
const_reference back ( ) const;
@

To resolve the ambiguity, it is possible to use \texttt{const\_method}
or \texttt{nonconst\_method} instead of \texttt{method} in order
to restrict the candidate methods.

\paragraph{Special methods}

\pkg{Rcpp} considers the methods \texttt{[[} and \texttt{[[<-} special,
and promotes them to indexing methods on the \proglang{R} side.

\subsubsection{Object finalizers}

The \texttt{.finalizer} member function of \texttt{class\_} can be used to
register a finalizer. A finalizer is a free function that takes a pointer
to the target class and return \texttt{void}. The finalizer is called
before the destructor and so operates on a valid object of the target class.

It can be used to perform operations, releasing resources, etc ...

The finalizer is called automatically when the \proglang{R} object that encapsulates
the \proglang{C++} object is garbage collected.

\subsubsection{S4 dispatch}

When a \proglang{C++} class is exposed by the \texttt{class\_} template,
a new S4 class is registered as well. The name of the S4 class is
obfuscated in order to avoid name clashes (i.e. two modules exposing the
same class).

This allows implementation of \proglang{R}-level
(S4) dispatch. For example, one might implement the \texttt{show}
method for \proglang{C++} \texttt{World} objects:

<<eval=FALSE>>=
setMethod( "show", yada$World , function(object) {
    msg <- paste( "World object with message : ", object$greet() )
    writeLines( msg )
} )
@

TODO: mention R inheritance (John ?)

\subsubsection{Full example}

% TODO: maybe replace this by something from wls or RcppModels ?

The following example illustrates how to use Rcpp modules to expose
the class \texttt{std::vector<double>} from the STL.

<<lang=cpp>>=
// convenience typedef
typedef std::vector<double> vec;

// helpers
void vec_assign( vec* obj, Rcpp::NumericVector data ) {
    obj->assign( data.begin(), data.end() );
}

void vec_insert( vec* obj, int position, Rcpp::NumericVector data) {
    vec::iterator it = obj->begin() + position;
    obj->insert( it, data.begin(), data.end() );
}

Rcpp::NumericVector vec_asR( vec* obj ) {
    return Rcpp::wrap( *obj );
}

void vec_set( vec* obj, int i, double value ) {
    obj->at( i ) = value;
}

RCPP_MODULE(mod_vec) {
    using namespace Rcpp;

    // we expose the class std::vector<double> as "vec" on the R side
    class_<vec>( "vec")

    // exposing constructors
    .constructor()
    .constructor<int>()

    // exposing member functions
    .method( "size", &vec::size)
    .method( "max_size", &vec::max_size)
    .method( "resize", &vec::resize)
    .method( "capacity", &vec::capacity)
    .method( "empty", &vec::empty)
    .method( "reserve", &vec::reserve)
    .method( "push_back", &vec::push_back )
    .method( "pop_back", &vec::pop_back )
    .method( "clear", &vec::clear )

    // specifically exposing const member functions
    .const_method( "back", &vec::back )
    .const_method( "front", &vec::front )
    .const_method( "at", &vec::at )

    // exposing free functions taking a std::vector<double>*
    // as their first argument
    .method( "assign", &vec_assign )
    .method( "insert", &vec_insert )
    .method( "as.vector", &vec_asR )

    // special methods for indexing
    .const_method( "[[", &vec::at )
    .method( "[[<-", &vec_set )

    ;
}
@

<<echo=FALSE,results=hide>>=
fx_vec <- cxxfunction(, '', includes = '
// convenience typedef
typedef std::vector<double> vec;

// helpers
void vec_assign( vec* obj, Rcpp::NumericVector data ) {
    obj->assign( data.begin(), data.end() );
}

void vec_insert( vec* obj, int position, Rcpp::NumericVector data) {
    vec::iterator it = obj->begin() + position;
    obj->insert( it, data.begin(), data.end() );
}

Rcpp::NumericVector vec_asR( vec* obj ) {
    return Rcpp::wrap( *obj );
}

void vec_set( vec* obj, int i, double value ) {
    obj->at( i ) = value;
}

RCPP_MODULE(mod_vec) {
    using namespace Rcpp;

    // we expose the class std::vector<double> as "vec" on the R side
    class_<vec>( "vec")

    // exposing constructors
    .constructor()
    .constructor<int>()

    // exposing member functions
    .method( "size", &vec::size)
    .method( "max_size", &vec::max_size)
    .method( "resize", &vec::resize)
    .method( "capacity", &vec::capacity)
    .method( "empty", &vec::empty)
    .method( "reserve", &vec::reserve)
    .method( "push_back", &vec::push_back )
    .method( "pop_back", &vec::pop_back )
    .method( "clear", &vec::clear )

    // specifically exposing const member functions
    .const_method( "back", &vec::back )
    .const_method( "front", &vec::front )
    .const_method( "at", &vec::at )

    // exposing free functions taking a std::vector<double>*
    // as their first argument
    .method( "assign", &vec_assign )
    .method( "insert", &vec_insert )
    .method( "as.vector", &vec_asR )

    // special methods for indexing
    .const_method( "[[", &vec::at )
    .method( "[[<-", &vec_set )

    ;
}
', plugin = "Rcpp" )
mod_vec <- Module( "mod_vec", getDynLib(fx_vec), mustStart = TRUE )
@

<<>>=
vec <- mod_vec$vec
v <- new( vec )
v$reserve( 50L )
v$assign( 1:10 )
v$push_back( 10 )
v$size()
v$capacity()
v[[ 0L ]]
v$as.vector()
@

\section{Using modules in other packages}

\subsection{Namespace import/export}

\subsubsection{Import all functions and classes}

When using \pkg{Rcpp} modules in a packages, the client package needs to
import \pkg{Rcpp}'s namespace. This is achieved by adding the
following line to the \texttt{NAMESPACE} file.

<<echo=FALSE,eval=TRUE>>=
options( prompt = " ", continue = " " )
@

<<eval=FALSE>>=
import( Rcpp )
@

The simplest way to load all functions and classes from a module directly
into a package namespace is to use the \Sexpr{link("loadRcppModules" )} function
within the \Sexpr{link(".onLoad" )} body.

<<eval=FALSE>>=
.onLoad <- function(libname, pkgname) {
    loadRcppModules()
}
@

This will look in the package's DESCRIPTION file for the \texttt{RcppModules}
field, load each declared module and populate their contents into the
package's namespace. For example, the \pkg{testRcppModule}
(part of \pkg{Rcpp}'s testing) package has this declaration:

\begin{verbatim}
RcppModules: yada, stdVector, NumEx
\end{verbatim}

\subsubsection{Just expose the module}

Alternatively, it is possible to just expose the module to the user of the package,
and let them extract the functions and classes as needed. This uses lazy loading
so that the module is only loaded the first time the user attempts to extract
a function or a class with the dollar extractor.

<<eval=FALSE>>=
yada <- Module( "yada" )

.onLoad <- function(libname, pkgname) {
    # placeholder
}
@

<<echo=FALSE,eval=TRUE>>=
options( prompt = "> ", continue = "+ " )
@


\subsection{Support for modules in skeleton generator}

The \Sexpr{link("Rcpp.package.skeleton")} function has been improved to help
\pkg{Rcpp} modules. When the \texttt{module} argument is set to \texttt{TRUE},
the skeleton generator installs code that uses a simple module.

<<eval=FALSE>>=
Rcpp.package.skeleton( "testmod", module = TRUE )
@

\subsection{Module documentation}

\pkg{Rcpp} defines a \Sexpr{link("prompt")} method for the
\Sexpr{linkS4class("Module")} class, allowing generation of a skeleton of an Rd
file containing some information about the module.

<<eval=FALSE>>=
yada <- Module( "yada" )
prompt( yada, "yada-module.Rd" )
@

\section{Future extensions}

\texttt{Boost.Python} has many more features that we would like to port
to Rcpp modules : class inheritance, default arguments, enum
types, ...

\section{Summary}

This note introduced \textsl{Rcpp modules} and illustrated how to expose
\proglang{C++} function and classes more easily to \proglang{R}.
We hope that \proglang{R} and \proglang{C++} programmers
find \textsl{Rcpp modules} useful.

\bibliographystyle{plainnat}
\bibliography{Rcpp}

\end{document}


