[Rcpp-devel] setup RcppArmadillo for osx maverick 10.9.2

[Ahmadou Dicko]

> I am slowly switching to Rcpp (what a wonderful tool!).. The classic Rcpp
> works fine.. but when I try to run a code with RccpArmadillo, I get the
> following error..


Indeed Rcpp is really awesome.

I have some questions :
 - Can we have access to your example (test2.cpp) ?
 - Which version of clang do you use ?

And finally what is the output of the following code :

library(Rcpp)
library(RcppArmadillo)

cppFunction(code =
            'arma::mat armatrans(arma::mat A) {
             return arma::trans(A);
         }', depends = "RcppArmadillo")

armatrans(matrix(1:6, ncol = 3))
##      [,1] [,2]
## [1,]    1    2
## [2,]    3    4
## [3,]    5    6


Now if this code doesn't work you also check if you have a working fortran
compiler (e.g http://r.research.att.com/libs/gfortran-4.8.2-darwin13.tar.bz2),
you will have more info at
http://cran.r-project.org/doc/manuals/R-admin.html#Mavericks
You can finally try to search the
R-sig-mac<https://stat.ethz.ch/mailman/listinfo/r-sig-mac>archives
too, you will probably find some intersting threads.

Hope it helps





On Sun, Apr 27, 2014 at 3:47 AM, Modibo Sidibe <sidibe.modibo at gmail.com>wrote:

> Hi All,
>
> I am slowly switching to Rcpp (what a wonderful tool!).. The classic Rcpp
> works fine.. but when I try to run a code with RccpArmadillo, I get the
> following error..
>
> clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG
>  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include
>  -I"/Users/ms486/Library/R/3.1/library/Rcpp/include"
> -I"/Users/ms486/Library/R/3.1/library/RcppArmadillo/include"    -fPIC
>  -Wall -mtune=core2 -g -O2  -c test2.cpp -o test2.o clang++ -dynamiclib
> -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module
> -multiply_defined suppress -L/usr/local/lib -o sourceCpp_40346.so test2.o
> -L/Library/Frameworks/R.framework/Resources/lib -lRlapack
> -L/Library/Frameworks/R.framework/Resources/lib -lRblas
> -L/usr/local/lib/gcc/x86_64-apple-darwin13.0.0/4.8.2 -lgfortran -lquadmath
> -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework
> -Wl,CoreFoundation
> Error in sourceCpp("test2.cpp") :
>   Error 1 occurred building shared library.
> ld: warning: directory not found for option
> '-L/usr/local/lib/gcc/x86_64-apple-darwin13.0.0/4.8.2'
> ld: library not found for -lquadmath
> clang: error: linker command failed with exit code 1 (use -v to see
> invocation)
> make: *** [sourceCpp_40346.so] Error 1
>
> Here is the outcome of the Rsession
>
> R version 3.1.0 (2014-04-10)
> Platform: x86_64-apple-darwin13.1.0 (64-bit)
>
> locale:
> [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
>
> attached base packages:
> [1] stats     graphics  grDevices utils     datasets  methods   base
>
> other attached packages:
> [1] Rcpp_0.11.1
>
> loaded via a namespace (and not attached):
> [1] parallel_3.1.0          RcppArmadillo_0.4.200.0 tools_3.1.0
>
> Thanks for your help!
> _______________________________________________
> Rcpp-devel mailing list
> Rcpp-devel at lists.r-forge.r-project.org
> https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/rcpp-devel
>



-- 
Ahmadou H. DICKO
statistician economist (Ingénieur Statisticien Économiste)
PhD candidate in Climate change economics
Faculty of economics and managment - Cheikh Anta Diop University
West African Science Service Center on Climate Change and Adaptated Land
Use (WASCAL)
Center for Development Research (ZEF) - University of Bonn
email : ahmadou.dicko at ucad.edu.sn
twitter : @dickoah
github : github/dickoa <https://github.com/dickoa>
tel : +221 33 827 55 16
portable: +221 77 123 81 69
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