[Rcpp-devel] Problem Installing RcppExamples on Mac OS X 10.8.1

[Benilton Carvalho]

The error is exactly the same if I run

install.packages('RcppExamples', type='source')

(given the absence of a configure, I wouldnt expect INSTALL_opts to
make a difference)

This is a fresh install of R (the binaries from Simon's website),
installed to the standard location and simply using my home dir to
store the additional packages I choose to use. Installing the Mac
binary version of RcppExamples seems to be okay, but I do have the
preference of installing packages from the source.

b


On 2 September 2012 17:10, Dirk Eddelbuettel <edd at debian.org> wrote:
>
> On 2 September 2012 at 16:55, Benilton Carvalho wrote:
> | Hi,
> |
> | I'm trying to install the RcppExamples packages. I'm running Mac OS X
> | 10.8.1 and R 2.15.1.
> |
> | I start the installation with:
> |
> | install.packages('RcppExamples', INSTALL_opts='--merge-multiarch',
> | type='source')
>
> What happens when you omit the INSTALL_opts argument?
>
> | and everything goes okay until I get the error shown at the end of the message.
> |
> | Any thoughts on how to proceed?
> |
> | thank you,
> |
> | benilton
> |
> | --
> |
> | g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
> | -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
> | -I/usr/local/include
> | -I"/Volumes/DataPartition/Users/beniltoncarvalho/Rlibs/2.15/RcppClassic/include"
> | -I"/Volumes/DataPartition/Users/beniltoncarvalho/Rlibs/2.15/Rcpp/include"
> |   -fPIC  -g -O2  -c newRcppVectorExample.cpp -o newRcppVectorExample.o
> | Error in tools:::file_path_as_absolute(base:::system.file(..., package
> | = "RcppClassic")) :
> |   file '' does not exist
>
> Something is not right here, and things usually work (witness availability of
> RcppExamples on all CRAN platforms, as well as on R-Forge).
>
> I'd try to minimize whatever differences you have in your setup.
>
> Dirk
>
> | Calls: <Anonymous> ... RcppClassicLdPath -> RcppClassic.system.file ->
> | <Anonymous>
> | Execution halted
> | g++ -arch x86_64 -dynamiclib -Wl,-headerpad_max_install_names
> | -undefined dynamic_lookup -single_module -multiply_defined suppress
> | -L/usr/local/lib -o RcppExamples.so RcppDataFrame.o RcppRNGs.o
> | classicRcppDateExample.o classicRcppExample.o
> | classicRcppMatrixExample.o classicRcppParamsExample.o
> | classicRcppStringVectorExample.o classicRcppVectorExample.o
> | newRcppDateExample.o newRcppMatrixExample.o newRcppParamsExample.o
> | newRcppStringVectorExample.o newRcppVectorExample.o
> | /Volumes/DataPartition/Users/beniltoncarvalho/Rlibs/2.15/Rcpp/lib/x86_64/libRcpp.a
> | -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework
> | -Wl,CoreFoundation
> | Error in tools:::file_path_as_absolute(base:::system.file(..., package
> | = "RcppClassic")) :
> |   file '' does not exist
> | Calls: <Anonymous> ... RcppClassicLdPath -> RcppClassic.system.file ->
> | <Anonymous>
> | Execution halted
> | installing to /Volumes/DataPartition/Users/beniltoncarvalho/Rlibs/2.15/RcppExamples/libs/x86_64
> | ** testing if installed package can be loaded
> | Error in dyn.load(file, DLLpath = DLLpath, ...) :
> |   unable to load shared object
> | '/Volumes/DataPartition/Users/beniltoncarvalho/Rlibs/2.15/RcppExamples/libs/x86_64/RcppExamples.so':
> |   dlopen(/Volumes/DataPartition/Users/beniltoncarvalho/Rlibs/2.15/RcppExamples/libs/x86_64/RcppExamples.so,
> | 6): Symbol not found: __Z14copyMessageToRPKc
> |   Referenced from:
> | /Volumes/DataPartition/Users/beniltoncarvalho/Rlibs/2.15/RcppExamples/libs/x86_64/RcppExamples.so
> |   Expected in: flat namespace
> |  in /Volumes/DataPartition/Users/beniltoncarvalho/Rlibs/2.15/RcppExamples/libs/x86_64/RcppExamples.so
> | Error: loading failed
> | Execution halted
> | ERROR: loading failed
> | * removing ‘/Volumes/DataPartition/Users/beniltoncarvalho/Rlibs/2.15/RcppExamples’
> | * restoring previous
> | ‘/Volumes/DataPartition/Users/beniltoncarvalho/Rlibs/2.15/RcppExamples’
> |
> | The downloaded source packages are in
> |       ‘/private/var/folders/sp/_dsm23tj7c1glq1hjgdf53500000gn/T/RtmpMsIbCd/downloaded_packages’
> | Warning message:
> | In install.packages("RcppExamples", INSTALL_opts = "--merge-multiarch",  :
> |   installation of package ‘RcppExamples’ had non-zero exit status
> | > sessionInfo()
> | R version 2.15.1 Patched (2012-09-01 r60533)
> | Platform: i386-apple-darwin9.8.0/i386 (32-bit)
> |
> | locale:
> | [1] en_GB.UTF-8/en_GB.UTF-8/en_GB.UTF-8/C/en_GB.UTF-8/en_GB.UTF-8
> |
> | attached base packages:
> | [1] stats     graphics  grDevices datasets  utils     methods   base
> |
> | other attached packages:
> | [1] BiocInstaller_1.4.7
> |
> | loaded via a namespace (and not attached):
> | [1] tcltk_2.15.1 tools_2.15.1
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>
> --
> Dirk Eddelbuettel | edd at debian.org | http://dirk.eddelbuettel.com