[Qpcr-commits] r127 - pkg/QCqPCR/inst/doc

[noreply at r-forge.r-project.org]

Author: stamats
Date: 2011-02-15 18:34:49 +0100 (Tue, 15 Feb 2011)
New Revision: 127

Modified:
   pkg/QCqPCR/inst/doc/QCqPCR.Rnw
Log:
removed "fig=TRUE" from code-chunks, now vignette builds and checks without errors or warnings

Modified: pkg/QCqPCR/inst/doc/QCqPCR.Rnw
===================================================================
--- pkg/QCqPCR/inst/doc/QCqPCR.Rnw	2010-12-24 02:05:25 UTC (rev 126)
+++ pkg/QCqPCR/inst/doc/QCqPCR.Rnw	2011-02-15 17:34:49 UTC (rev 127)
@@ -89,18 +89,18 @@
 The average can be the average Ct value for all wells on a given plate, as is the case when plotting plate residuals, calculated for the same position across the different plates, as is the case when plotting well residuals, or can be calculated for each of the detectors, which might be intra or inter-plate, depending on the experimental setup.
 
 For plate residuals:
-<<PseudoPlotPlate, fig=TRUE, width = 200, height=200>>=
+<<PseudoPlotPlate, width = 200, height=200>>=
 #PseudoPlot(qPCRBatch=taqman.qPCRBatch, plotType="Plate.Residuals", cutOff=38)
 #PseudoPlot(qPCRBatch=taqman.qPCRBatch, plotType="Plate.Residuals", cutOff=38, statType="non-parametric")
 @
 For well residuals:
-<<PseudoPlotWell, fig=TRUE, width = 200, height=200>>=
+<<PseudoPlotWell, width = 200, height=200>>=
 #PseudoPlot(qPCRBatch=taqman.qPCRBatch, plateToPlot="1", plotType="Well.Residuals", cutOff=38)
 #PseudoPlot(qPCRBatch=taqman.qPCRBatch, plateToPlot="1", plotType="Well.Residuals", cutOff=38, statType="non-parametric")
 @
 For detector residuals:
 \subsubsection{Detector Residuals}
-<<PseudoPlotDetector, fig=TRUE, width = 200, height=200>>=
+<<PseudoPlotDetector, width = 200, height=200>>=
 #PseudoPlot(qPCRBatch=taqman.qPCRBatch, plateToPlot="1", plotType="Detector.Residuals", cutOff=38)
 #PseudoPlot(qPCRBatch=taqman.qPCRBatch, plateToPlot="1", plotType="Detector.Residuals", cutOff=38, statType="non-parametric")
 @