[Qpcr-commits] r107 - in pkg/ReadqPCR: . inst inst/doc man

[noreply at r-forge.r-project.org]

Author: stamats
Date: 2010-05-22 10:12:22 +0200 (Sat, 22 May 2010)
New Revision: 107

Modified:
   pkg/ReadqPCR/DESCRIPTION
   pkg/ReadqPCR/inst/CITATION
   pkg/ReadqPCR/inst/doc/ReadqPCR.Rnw
   pkg/ReadqPCR/man/ReadqPCR-package.Rd
Log:
some minor modifications/updates

Modified: pkg/ReadqPCR/DESCRIPTION
===================================================================
--- pkg/ReadqPCR/DESCRIPTION	2010-05-17 17:10:29 UTC (rev 106)
+++ pkg/ReadqPCR/DESCRIPTION	2010-05-22 08:12:22 UTC (rev 107)
@@ -1,11 +1,11 @@
 Package: ReadqPCR
 Version: 1.0
-Date: 2008-10-26
+Date: 2010-05-22
 Title: Read qPCR data
 Description: The package provides functions to read raw RT-qPCR data of different platforms.
 Author: James Perkins, Matthias Kohl
 Maintainer: James Perkins <jperkins at biochem.ucl.ac.uk>
-Depends: R(>= 2.7.0), Biobase, methods, affy
-License: GPL (>= 2)
+Depends: R(>= 2.10.0), Biobase, methods, affy
+License: LGPL-3
 LazyLoad: yes
 URL: http://qpcr.r-forge.r-project.org/

Modified: pkg/ReadqPCR/inst/CITATION
===================================================================
--- pkg/ReadqPCR/inst/CITATION	2010-05-17 17:10:29 UTC (rev 106)
+++ pkg/ReadqPCR/inst/CITATION	2010-05-22 08:12:22 UTC (rev 107)
@@ -1,3 +1,7 @@
+if(!exists("meta") || is.null(meta)) meta <- packageDescription("ReadqPCR")
+year <- sub("-.*", "", meta$Date)
+note <- sprintf("R package version %s", meta$Version)
+
 citHeader("To cite package ReadqPCR in publications use:")
 
 citEntry(entry="Manual",
@@ -4,6 +8,11 @@
          title = "ReadqPCR: Read qPCR data",
          author = personList(as.person("J. Perkins"), as.person("M. Kohl")),
          language = "English",
-         year = 2008,
+         year = year,
+         note = note,
          type = "R package",
-textVersion = paste("Perkins, J. and Kohl, M., (2008).", "ReadqPCR: Read qPCR data.", "R package."))
+         url = "http://qpcr.r-forge.r-project.org/",
+         textVersion = paste("Perkins, J. and Kohl, M.",
+                             sprintf("(%s).", year),
+                             "ReadqPCR: Read qPCR data.",
+                             paste(note, ".", sep = "")))

Modified: pkg/ReadqPCR/inst/doc/ReadqPCR.Rnw
===================================================================
--- pkg/ReadqPCR/inst/doc/ReadqPCR.Rnw	2010-05-17 17:10:29 UTC (rev 106)
+++ pkg/ReadqPCR/inst/doc/ReadqPCR.Rnw	2010-05-22 08:12:22 UTC (rev 107)
@@ -9,9 +9,9 @@
 \usepackage[%
 baseurl={http://qpcr.r-forge.r-project.org/},%
 pdftitle={ReadqPCR: Functions to load RT-qPCR data into R},%
-pdfauthor={Matthias Kohl and James Perkins},%
+pdfauthor={James Perkins},%
 pdfsubject={Functions to load RT-qPCR data into R},%
-pdfkeywords={real-time, quantitative, PCR, qPCR, RT-qPCR, housekeeper, reference gene, geNorm, NormFinder},%
+pdfkeywords={real-time, quantitative, PCR, qPCR, RT-qPCR, load data},%
 pagebackref,bookmarks,colorlinks,linkcolor=darkblue,citecolor=darkblue,%
 pagecolor=darkblue,raiselinks,plainpages,pdftex]{hyperref}
 %

Modified: pkg/ReadqPCR/man/ReadqPCR-package.Rd
===================================================================
--- pkg/ReadqPCR/man/ReadqPCR-package.Rd	2010-05-17 17:10:29 UTC (rev 106)
+++ pkg/ReadqPCR/man/ReadqPCR-package.Rd	2010-05-22 08:12:22 UTC (rev 107)
@@ -11,8 +11,9 @@
 Package: \tab ReadqPCR\cr
 Type: \tab Package\cr
 Version: \tab 1.0\cr
-Date: \tab 2008-10-16\cr
-License: \tab GPL (>= 2)\cr
+Date: \tab 20010-05-22\cr
+Depends: \tab R(>= 2.10.0), Biobase, ReadqPCR, methods, RColorBrewer\cr
+License: \tab LGPL-3\cr
 LazyLoad: \tab yes\cr
 }
 library(ReadqPCR)
@@ -32,7 +33,11 @@
 %~~ Optional links to other man pages, e.g. ~~
 %~~ \code{\link[<pkg>:<pkg>-package]{<pkg>}} ~~
 %}
-%\examples{
-%~~ simple examples of the most important functions ~~
-%}
+\examples{
+## some examples are given in the vignette
+\dontrun{
+library(ReadqPCR)
+vignette("ReadqPCR")
+}
+}
 \keyword{ package }