[Pomp-commits] r845 - branches/premif2

[noreply at r-forge.r-project.org]

Author: kingaa
Date: 2013-04-16 16:48:28 +0200 (Tue, 16 Apr 2013)
New Revision: 845

Removed:
   branches/premif2/DESCRIPTION
   branches/premif2/NAMESPACE
   branches/premif2/R/
   branches/premif2/data/
   branches/premif2/demo/
   branches/premif2/inst/
   branches/premif2/man/
   branches/premif2/src/
   branches/premif2/tests/
Log:
- start over


Deleted: branches/premif2/DESCRIPTION
===================================================================
--- branches/premif2/DESCRIPTION	2013-04-16 14:21:36 UTC (rev 844)
+++ branches/premif2/DESCRIPTION	2013-04-16 14:48:28 UTC (rev 845)
@@ -1,25 +0,0 @@
-Package: pomp
-Type: Package
-Title: Statistical inference for partially observed Markov processes
-Version: 0.44-1
-Date: 2013-01-09
-Author: Aaron A. King, Edward L. Ionides, Carles Breto, Steve Ellner, Bruce Kendall, Helen Wearing, Matthew J. Ferrari, Michael Lavine, Daniel C. Reuman
-Maintainer: Aaron A. King <kingaa at umich.edu>
-URL: http://pomp.r-forge.r-project.org
-Description: Inference methods for partially-observed Markov processes
-Depends: R(>= 2.14.1), stats, methods, graphics, mvtnorm, subplex, deSolve
-License: GPL(>= 2)
-LazyLoad: true
-LazyData: false
-BuildVignettes: no
-Collate: aaa.R authors.R version.R eulermultinom.R plugins.R 
-	 parmat.R slice-design.R profile-design.R sobol.R bsplines.R sannbox.R
-	 pomp-fun.R pomp-class.R pomp.R pomp-methods.R 
-	 rmeasure-pomp.R rprocess-pomp.R init-state-pomp.R dmeasure-pomp.R dprocess-pomp.R skeleton-pomp.R 
-	 simulate-pomp.R trajectory-pomp.R plot-pomp.R 
-	 pfilter.R pfilter-methods.R traj-match.R bsmc.R
-	 mif-class.R particles-mif.R mif.R mif-methods.R compare-mif.R 
- 	 pmcmc.R pmcmc-methods.R compare-pmcmc.R
- 	 nlf-funcs.R nlf-guts.R nlf-objfun.R nlf.R 
-	 probe.R probe-match.R basic-probes.R spect.R spect-match.R
-	 builder.R example.R

Deleted: branches/premif2/NAMESPACE
===================================================================
--- branches/premif2/NAMESPACE	2013-04-16 14:21:36 UTC (rev 844)
+++ branches/premif2/NAMESPACE	2013-04-16 14:48:28 UTC (rev 845)
@@ -1,97 +0,0 @@
-useDynLib(			
-          pomp,
-          get_pomp_fun,
-          bspline_basis,
-          periodic_bspline_basis,
-          bspline_basis_function,
-          systematic_resampling,
-          euler_model_simulator,
-          euler_model_density,
-          lookup_in_table,
-          SSA_simulator,
-          R_Euler_Multinom,D_Euler_Multinom,R_GammaWN,
-          pfilter_computations,
-          simulation_computations,
-          iterate_map,traj_transp_and_copy,
-          apply_probe_data,apply_probe_sim,
-          probe_marginal_setup,probe_marginal_solve,
-          probe_acf,probe_ccf,
-          probe_nlar,
-          synth_loglik,
-          pomp_desolve_setup,pomp_desolve_takedown,
-          pomp_vf_eval,
-          do_partrans,
-          do_rprocess,
-          do_dprocess,
-          do_rmeasure,
-          do_dmeasure,
-          do_skeleton,
-          do_init_state
-          )
-
-importFrom(graphics,plot)		
-importFrom(stats,simulate,time,coef,logLik,window)
-importFrom(mvtnorm,dmvnorm,rmvnorm)
-importFrom(subplex,subplex)
-importFrom(deSolve,ode)
-
-exportClasses(
-              pomp,
-              pfilterd.pomp,
-              mif,
-              pmcmc,
-              traj.matched.pomp,
-              probed.pomp,probe.matched.pomp,
-              spect.pomp,spect.matched.pomp
-              )
-
-exportMethods(
-              pomp,
-              plot,show,print,coerce,summary,logLik,window,"$",
-              dprocess,rprocess,rmeasure,dmeasure,init.state,skeleton,
-              data.array,obs,partrans,coef,"coef<-",time,"time<-",timezero,"timezero<-",
-              simulate,pfilter,
-              eff.sample.size,cond.logLik,
-              particles,mif,continue,states,trajectory,
-              pred.mean,pred.var,filter.mean,conv.rec,
-              bsmc,
-              pmcmc,dprior,
-              spect,probe,
-              probe.match,traj.match
-              )
-
-export(
-       as.data.frame.pomp,
-       reulermultinom,
-       deulermultinom,
-       rgammawn,
-       euler.sim,
-       discrete.time.sim,
-       onestep.sim,
-       onestep.dens,
-       gillespie.sim,
-       sobol,
-       sobolDesign,
-       sliceDesign,
-       profileDesign,
-       bspline.basis,
-       periodic.bspline.basis,
-       compare.mif,
-       nlf,
-       parmat,
-       probe.mean,
-       probe.median,
-       probe.var,
-       probe.sd,
-       probe.period,
-       probe.quantile,
-       probe.acf,
-       probe.ccf,
-       probe.nlar,
-       probe.marginal,
-       sannbox,
-       spect.match,
-       traj.match.objfun,
-       pompBuilder,
-       pompExample
-       )