[Pomp-commits] r561 - in pkg: . R inst man

[noreply at r-forge.r-project.org]

Author: kingaa
Date: 2011-10-18 12:05:45 +0200 (Tue, 18 Oct 2011)
New Revision: 561

Modified:
   pkg/DESCRIPTION
   pkg/R/pomp-methods.R
   pkg/inst/NEWS
   pkg/man/probe.Rd
   pkg/man/spect.Rd
   pkg/man/traj-match.Rd
Log:
- minor corrections to the documentation


Modified: pkg/DESCRIPTION
===================================================================
--- pkg/DESCRIPTION	2011-09-05 16:16:42 UTC (rev 560)
+++ pkg/DESCRIPTION	2011-10-18 10:05:45 UTC (rev 561)
@@ -1,8 +1,8 @@
 Package: pomp
 Type: Package
 Title: Statistical inference for partially observed Markov processes
-Version: 0.39-3
-Date: 2011-09-05
+Version: 0.39-4
+Date: 2011-10-18
 Author: Aaron A. King, Edward L. Ionides, Carles Breto, Steve Ellner, Bruce Kendall, Helen Wearing, Matthew J. Ferrari, Michael Lavine, Daniel C. Reuman
 Maintainer: Aaron A. King <kingaa at umich.edu>
 URL: http://pomp.r-forge.r-project.org

Modified: pkg/R/pomp-methods.R
===================================================================
--- pkg/R/pomp-methods.R	2011-09-05 16:16:42 UTC (rev 560)
+++ pkg/R/pomp-methods.R	2011-10-18 10:05:45 UTC (rev 561)
@@ -177,7 +177,7 @@
                   inverse=function (x) do.call(object at par.untrans,c(list(x),object at userdata))
                   )
   if (r > 1) {
-    retval <- apply(params,2:r,tfunc)
+    retval <- apply(params,seq.int(from=2,to=r),tfunc)
     no.names <- is.null(rownames(retval))
   } else {
     retval <- tfunc(params)

Modified: pkg/inst/NEWS
===================================================================
--- pkg/inst/NEWS	2011-09-05 16:16:42 UTC (rev 560)
+++ pkg/inst/NEWS	2011-10-18 10:05:45 UTC (rev 561)
@@ -1,4 +1,7 @@
 NEWS
+0.39-4
+     o	Minor corrections to the documentation for 'spect', 'probe', and 'traj.match'.
+
 0.39-3
      o	The help files for 'pfilter' and 'mif' have been updated to explain how to use a variable number of particles in the particle filtering algorithm.
 

Modified: pkg/man/probe.Rd
===================================================================
--- pkg/man/probe.Rd	2011-09-05 16:16:42 UTC (rev 560)
+++ pkg/man/probe.Rd	2011-10-18 10:05:45 UTC (rev 561)
@@ -89,8 +89,8 @@
   }
   \item{\dots}{
     Additional arguments.
-    In the case of \code{spec}, these are currently ignored.
-    In the case of \code{spec.match}, these are passed to \code{optim} or \code{subplex} in the \code{control} list.
+    In the case of \code{probe}, these are currently ignored.
+    In the case of \code{probe.match}, these are passed to \code{optim} or \code{subplex} in the \code{control} list.
   }
 }
 \details{

Modified: pkg/man/spect.Rd
===================================================================
--- pkg/man/spect.Rd	2011-09-05 16:16:42 UTC (rev 560)
+++ pkg/man/spect.Rd	2011-10-18 10:05:45 UTC (rev 561)
@@ -94,8 +94,8 @@
   }
   \item{\dots}{
     Additional arguments.
-    In the case of \code{spec}, these are currently ignored.
-    In the case of \code{spec.match}, these are passed to \code{optim} or \code{subplex} in the \code{control} list.
+    In the case of \code{spect}, these are currently ignored.
+    In the case of \code{spect.match}, these are passed to \code{optim} or \code{subplex} in the \code{control} list.
   }
 }
 \details{

Modified: pkg/man/traj-match.Rd
===================================================================
--- pkg/man/traj-match.Rd	2011-09-05 16:16:42 UTC (rev 560)
+++ pkg/man/traj-match.Rd	2011-10-18 10:05:45 UTC (rev 561)
@@ -39,7 +39,7 @@
     if \code{TRUE}, no optimization is attempted and the log likelihood value is evaluated at the \code{start} parameters.
   }
   \item{\dots}{
-    Arguments that will be passed to \code{\link{optim}} in its \code{control} list.
+    Arguments that will be passed to \code{\link{optim}} or \code{\link{subplex}} via their \code{control} lists.
   }
 }
 \details{