[Pomp-commits] r565 - in pkg: . inst

[noreply at r-forge.r-project.org]

Author: kingaa
Date: 2011-11-12 16:41:19 +0100 (Sat, 12 Nov 2011)
New Revision: 565

Modified:
   pkg/DESCRIPTION
   pkg/inst/ChangeLog
   pkg/inst/NEWS
Log:
- version 0.39-4


Modified: pkg/DESCRIPTION
===================================================================
--- pkg/DESCRIPTION	2011-11-10 13:53:14 UTC (rev 564)
+++ pkg/DESCRIPTION	2011-11-12 15:41:19 UTC (rev 565)
@@ -2,7 +2,7 @@
 Type: Package
 Title: Statistical inference for partially observed Markov processes
 Version: 0.39-4
-Date: 2011-11-10
+Date: 2011-11-11
 Author: Aaron A. King, Edward L. Ionides, Carles Breto, Steve Ellner, Bruce Kendall, Helen Wearing, Matthew J. Ferrari, Michael Lavine, Daniel C. Reuman
 Maintainer: Aaron A. King <kingaa at umich.edu>
 URL: http://pomp.r-forge.r-project.org

Modified: pkg/inst/ChangeLog
===================================================================
--- pkg/inst/ChangeLog	2011-11-10 13:53:14 UTC (rev 564)
+++ pkg/inst/ChangeLog	2011-11-12 15:41:19 UTC (rev 565)
@@ -1,5 +1,27 @@
+2011-11-10  kingaa
+
+	* [r564] DESCRIPTION, R/sannbox.R, tests/ou2-probe.Rout.save: -
+	  change SANN algorithm in sannbox to replace non-finite
+	  objective-function values with a big number (as is done in
+	  optim's SANN).
+	  - update test file
+
+2011-10-21  kingaa
+
+	* [r563] DESCRIPTION, R/nlf-objfun.R, R/traj-match.R: - fix
+	  infelicity in 'traj.match' and 'nlf' that arises when the 'data'
+	  slot has no rownames (thanks to K. Hader) for pointing it out
+
+2011-10-18  kingaa
+
+	* [r562] tests/ou2-probe.R: - avoid deprecated mean(<data-frame>)
+	* [r561] DESCRIPTION, R/pomp-methods.R, inst/NEWS, man/probe.Rd,
+	  man/spect.Rd, man/traj-match.Rd: - minor corrections to the
+	  documentation
+
 2011-09-05  kingaa
 
+	* [r560] inst/ChangeLog: - update ChangeLog
 	* [r559] tests/ou2-icfit.Rout.save: - update file
 	* [r558] DESCRIPTION, R/mif.R, inst/NEWS, man/mif.Rd,
 	  tests/ou2-icfit.R, tests/ou2-icfit.Rout.save, tests/sir-icfit.R,

Modified: pkg/inst/NEWS
===================================================================
--- pkg/inst/NEWS	2011-11-10 13:53:14 UTC (rev 564)
+++ pkg/inst/NEWS	2011-11-12 15:41:19 UTC (rev 565)
@@ -2,6 +2,13 @@
 0.39-4
      o	Minor corrections to the documentation for 'spect', 'probe', and 'traj.match'.
 
+     o  Fix infelicity in 'traj.match' and 'nlf' that arises when the 'data' slot has no rownames.
+     	Rownames are not strictly required for the 'data' slot.
+
+     o  The 'sannbox' algorithm now should work even when the objective function throws a non-finite value.
+     	The behavior now is to replace non-finite values with a large number.
+	This behavior follows that of the 'SANN' method in 'optim.
+
 0.39-3
      o	The help files for 'pfilter' and 'mif' have been updated to explain how to use a variable number of particles in the particle filtering algorithm.