[Pomp-commits] r406 - www/content
noreply at r-forge.r-project.org
noreply at r-forge.r-project.org
Fri Nov 5 21:51:47 CET 2010
Author: kingaa
Date: 2010-11-05 21:51:47 +0100 (Fri, 05 Nov 2010)
New Revision: 406
Modified:
www/content/about.htm
www/content/pomp.bib
www/content/refs.htm
www/content/refs.tex
Log:
- update reference list
- warn about backward compatibility not being guaranteed
Modified: www/content/about.htm
===================================================================
--- www/content/about.htm 2010-11-05 15:06:37 UTC (rev 405)
+++ www/content/about.htm 2010-11-05 20:51:47 UTC (rev 406)
@@ -24,6 +24,8 @@
<p>The package is provided under the GPL. Contributions are welcome, as are comments, suggestions, examples, and bug reports. Please send these to <tt>kingaa at umich dot edu</tt>.</p>
+<p><strong>pomp</strong> is in the beta phase of development: features are actively being added and backward compatibility of changes is not guaranteed.</p>
+
<p>To keep abreast of new developments, <a href="https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/pomp-announce" target="_top">subscribe to the <i>pomp-announce</i> mailing list</a>.</p>
<table>
Modified: www/content/pomp.bib
===================================================================
--- www/content/pomp.bib 2010-11-05 15:06:37 UTC (rev 405)
+++ www/content/pomp.bib 2010-11-05 20:51:47 UTC (rev 406)
@@ -3,7 +3,7 @@
@ARTICLE{Andrieu2010,
author = {Andrieu, Christophe and Doucet, Arnaud and Holenstein, Roman},
- title = {Particle {M}arkov chain {M}onte {C}arlo methods},
+ title = {{P}article {M}arkov chain {M}onte {C}arlo methods},
journal = {Journal of the Royal Statistical Society, Series B},
year = {2010},
volume = {72},
@@ -31,8 +31,8 @@
@ARTICLE{Arulampalam2002,
author = {Arulampalam, M. S. and Maskell, S. and Gordon, N. and Clapp, T.},
- title = {A Tutorial on Particle Filters for Online Nonlinear, Non-{G}aussian
- {B}ayesian Tracking},
+ title = {{A} {T}utorial on {P}article {F}ilters for {O}nline {N}onlinear,
+ {N}on-{G}aussian {B}ayesian {T}racking},
journal = {IEEE Transactions on Signal Processing},
year = {2002},
volume = {50},
@@ -45,8 +45,8 @@
@ARTICLE{Bhadra2010,
author = {Bhadra, Anindya},
- title = {Discussion of `Particle {M}arkov chain {M}onte {C}arlo methods' by
- C.\ Andrieu, A.\ Doucet and R.\ Holenstein},
+ title = {{D}iscussion of `{P}article {M}arkov chain {M}onte {C}arlo methods'
+ by {C}.\ {A}ndrieu, {A}.\ {D}oucet and {R}.\ {H}olenstein},
journal = {Journal of the Royal Statistical Society, Series B},
year = {2010},
volume = {72},
@@ -60,7 +60,7 @@
@ARTICLE{Breto2009,
author = {Carles Bret\'{o} and Daihai He and Edward L. Ionides and Aaron A.
King},
- title = {Time series analysis via mechanistic models},
+ title = {{T}ime series analysis via mechanistic models},
journal = {Annals of Applied Statistics},
year = {2009},
volume = {3},
@@ -92,7 +92,7 @@
@ARTICLE{Ellner1998,
author = {S. P. Ellner and B. A. Bailey and G. V. Bobashev and A. R. Gallant
and B. T. Grenfell and D. W. Nychka},
- title = {Noise and nonlinearity in measles epidemics: Combining mechanistic
+ title = {{N}oise and nonlinearity in measles epidemics: {C}ombining mechanistic
and statistical approaches to population modeling},
journal = {American Naturalist},
year = {1998},
@@ -128,7 +128,7 @@
@ARTICLE{Gillespie1977a,
author = {D. T. Gillespie},
- title = {Exact Stochastic Simulation of Coupled Chemical Reactions},
+ title = {{E}xact {S}tochastic {S}imulation of {C}oupled {C}hemical {R}eactions},
journal = {Journal of Physical Chemistry},
year = {1977},
volume = {81},
@@ -140,8 +140,8 @@
@ARTICLE{He2010,
author = {He, Daihai and Ionides, Edward L. and King, Aaron A.},
- title = {Plug-and-play inference for disease dynamics: measles in large and
- small populations as a case study},
+ title = {{P}lug-and-play inference for disease dynamics: measles in large
+ and small populations as a case study},
journal = {Journal of the Royal Society Interface},
year = {2010},
volume = {7},
@@ -173,7 +173,7 @@
@ARTICLE{Ionides2006,
author = {E. L. Ionides and C. Bret{\'o} and Aaron A. King},
- title = {Inference for nonlinear dynamical systems},
+ title = {{I}nference for nonlinear dynamical systems},
journal = {Proceedings of the National Academy of Sciences of the U.S.A.},
year = {2006},
volume = {103},
@@ -204,7 +204,7 @@
@ARTICLE{Kendall1999,
author = {B. E. Kendall and C. J. Briggs and W. W. Murdoch and P. Turchin and
S. P. Ellner and E. McCauley and R. M. Nisbet and S. N. Wood},
- title = {Why do populations cycle? A synthesis of statistical and mechanistic
+ title = {{W}hy do populations cycle? {A} synthesis of statistical and mechanistic
modeling approaches},
journal = {Ecology},
year = {1999},
@@ -248,8 +248,8 @@
@ARTICLE{Kendall2005,
author = {Kendall, B. E. and Ellner, S. P. and McCauley, E. and Wood, S. N.
and Briggs, C. J. and Murdoch, W. M. and Turchin, P.},
- title = {Population cycles in the pine looper moth: Dynamical tests of mechanistic
- hypotheses},
+ title = {{P}opulation cycles in the pine looper moth: {D}ynamical tests of
+ mechanistic hypotheses},
journal = {Ecological Monographs},
year = {2005},
volume = {75},
@@ -297,7 +297,7 @@
@ARTICLE{King2008,
author = {King, Aaron A. and Ionides, Edward L. and Pascual, Mercedes and Bouma,
Menno J.},
- title = {Inapparent infections and cholera dynamics},
+ title = {{I}napparent infections and cholera dynamics},
journal = {Nature},
year = {2008},
volume = {454},
@@ -340,7 +340,8 @@
@INCOLLECTION{Liu2001b,
author = {Liu, J and West, M.},
- title = {Combining Parameter and State Estimation in Simulation-Based Filtering},
+ title = {{C}ombining {P}arameter and {S}tate {E}stimation in {S}imulation-{B}ased
+ {F}iltering},
booktitle = {Sequential {M}onte {C}arlo Methods in Practice},
publisher = {Springer, New York},
year = {2001},
@@ -353,7 +354,7 @@
@ARTICLE{Reuman2006,
author = {Reuman, D. C. and Desharnais, R. A. and Costantino, R. F. and Ahmad,
O. S. and Cohen, J. E.},
- title = {Power spectra reveal the influence of stochasticity on nonlinear
+ title = {{P}ower spectra reveal the influence of stochasticity on nonlinear
population dynamics},
journal = {Proceedings of the National Academy of Sciences of the U.S.A.},
year = {2006},
@@ -364,7 +365,7 @@
@ARTICLE{Wearing2009,
author = {Helen J Wearing and Pejman Rohani},
- title = {Estimating the duration of pertussis immunity using epidemiological
+ title = {{E}stimating the duration of pertussis immunity using epidemiological
signatures.},
journal = {PLoS Pathogens},
year = {2009},
@@ -398,6 +399,21 @@
timestamp = {2010.02.05}
}
+ at ARTICLE{Wood2010,
+ author = {Wood, Simon N.},
+ title = {{S}tatistical inference for noisy nonlinear ecological dynamic systems},
+ journal = {Nature},
+ year = {2010},
+ volume = {466},
+ pages = {1102--1104},
+ month = aug,
+ doi = {10.1038/nature09319},
+ file = {Wood2010.pdf:Wood2010.pdf:PDF;Wood2010_Supplement.pdf:Wood2010_Supplement.pdf:PDF},
+ issn = {1476-4687},
+ owner = {kingaa},
+ timestamp = {2010.08.17}
+}
+
@comment{jabref-meta: selector_publisher:}
@comment{jabref-meta: selector_author:}
Modified: www/content/refs.htm
===================================================================
--- www/content/refs.htm 2010-11-05 15:06:37 UTC (rev 405)
+++ www/content/refs.htm 2010-11-05 20:51:47 UTC (rev 406)
@@ -8,7 +8,7 @@
<dt><a name="Arulampalam2002">Arulampalam, M. S., S. Maskell, N. Gordon, and T. Clapp. 2002.</a></dt>
- <dd>A tutorial on particle filters for online nonlinear, non-Gaussian Bayesian tracking.<br>
+ <dd>A Tutorial on Particle Filters for Online Nonlinear, Non-Gaussian Bayesian Tracking.<br>
IEEE Transactions on Signal Processing, <b>50</b>:174 - 188.<br></dd>
<dt><a name="Breto2009">Bretó, C., D. He, E. L. Ionides, and A. A. King. 2009.</a></dt>
@@ -33,7 +33,7 @@
<dt><a name="Kendall1999">Kendall, B. E., C. J. Briggs, W. W. Murdoch, P. Turchin, S. P. Ellner, E. McCauley, R. M. Nisbet, and S. N. Wood. 1999.</a></dt>
- <dd>Why do populations cycle? a synthesis of statistical and mechanistic modeling approaches.<br>
+ <dd>Why do populations cycle? A synthesis of statistical and mechanistic modeling approaches.<br>
Ecology, <b>80</b>:1789-1805.<br></dd>
<dt><a name="Kendall2005">Kendall, B. E., S. P. Ellner, E. McCauley, S. N. Wood, C. J. Briggs, W. M. Murdoch, and P. Turchin. 2005.</a></dt>
@@ -48,11 +48,16 @@
<dt><a name="Liu2001b">Liu, J. and M. West. 2001.</a></dt>
- <dd>Combining parameter and state estimation in simulation-based filtering.<br>
+ <dd>Combining Parameter and State Estimation in Simulation-Based Filtering.<br>
In A. Doucet, N. de Freitas, and N. J. Gordon, editors, Sequential Monte Carlo Methods in Practice, pages 197-224. Springer, New York.<br></dd>
<dt><a name="Reuman2006">Reuman, D. C., R. A. Desharnais, R. F. Costantino, O. S. Ahmad, and J. E. Cohen. 2006.</a></dt>
<dd>Power spectra reveal the influence of stochasticity on nonlinear population dynamics.<br>
Proceedings of the National Academy of Sciences of the U.S.A., <b>103</b>:18860-18865.<br></dd>
+
+ <dt><a name="Wood2010">Wood, S. N. 2010.</a></dt>
+
+ <dd>Statistical inference for noisy nonlinear ecological dynamic systems.<br>
+ Nature, <b>466</b>:1102-1104.<br></dd>
</dl>
Modified: www/content/refs.tex
===================================================================
--- www/content/refs.tex 2010-11-05 15:06:37 UTC (rev 405)
+++ www/content/refs.tex 2010-11-05 20:51:47 UTC (rev 406)
@@ -16,6 +16,7 @@
\nocite{King2008}
\nocite{Liu2001b}
\nocite{Reuman2006}
+\nocite{Wood2010}
\bibliographystyle{ecology}
\bibliography{pomp}
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