[Pomp-commits] r238 - in www: . content
noreply at r-forge.r-project.org
noreply at r-forge.r-project.org
Mon May 17 14:54:41 CEST 2010
Author: kingaa
Date: 2010-05-17 14:54:41 +0200 (Mon, 17 May 2010)
New Revision: 238
Modified:
www/content/pomp.bib
www/content/refs.htm
www/index.php
Log:
- fix R-forge logo
- update reference list
Modified: www/content/pomp.bib
===================================================================
--- www/content/pomp.bib 2010-05-16 16:34:15 UTC (rev 237)
+++ www/content/pomp.bib 2010-05-17 12:54:41 UTC (rev 238)
@@ -84,13 +84,26 @@
timestamp = {2009.09.22}
}
- at ARTICLE{He2009,
+ at ARTICLE{Gillespie1977a,
+ author = {D. T. Gillespie},
+ title = {Exact Stochastic Simulation of Coupled Chemical Reactions},
+ journal = {J. Phys. Chem.},
+ year = {1977},
+ volume = {81},
+ pages = {2340--2361},
+ file = {Gillespie1977a.pdf:Gillespie1977a.pdf:PDF},
+ owner = {kingaa},
+ timestamp = {2007.03.13}
+}
+
+ at ARTICLE{He2010,
author = {He, Daihai and Ionides, Edward L. and King, Aaron A.},
title = {Plug-and-play inference for disease dynamics: measles in large and
small populations as a case study},
journal = {Journal of The Royal Society Interface},
- year = {2009},
- pages = {in press},
+ year = {2010},
+ volume = {7},
+ pages = {271--283},
month = jun,
abstract = {Statistical inference for mechanistic models of partially observed
dynamic systems is an active area of research. Most existing inference
@@ -111,7 +124,7 @@
Our approach is readily applicable to many other epidemiological
and ecological systems.},
doi = {10.1098/rsif.2009.0151},
- file = {He2009.pdf:He2009.pdf:PDF;He2009_Supplement.pdf:He2009_Supplement.pdf:PDF},
+ file = {He2010.pdf:He2010.pdf:PDF;:He2010_Supplement.pdf:PDF},
owner = {kingaa},
timestamp = {2009.06.26}
}
@@ -284,6 +297,42 @@
timestamp = {2008.08.13}
}
+ at ARTICLE{Wearing2009,
+ author = {Helen J Wearing and Pejman Rohani},
+ title = {Estimating the duration of pertussis immunity using epidemiological
+ signatures.},
+ journal = {PLoS pathogens},
+ year = {2009},
+ volume = {5},
+ pages = {e1000647},
+ number = {10},
+ month = {Oct},
+ abstract = {Case notifications of pertussis have shown an increase in a number
+ of countries with high rates of routine pediatric immunization. This
+ has led to significant public health concerns over a possible pertussis
+ re-emergence. A leading proposed explanation for the observed increase
+ in incidence is the loss of immunity to pertussis, which is known
+ to occur after both natural infection and vaccination. Little is
+ known, however, about the typical duration of immunity and its epidemiological
+ implications. Here, we analyze a simple mathematical model, exploring
+ specifically the inter-epidemic period and fade-out frequency. These
+ predictions are then contrasted with detailed incidence data for
+ England and Wales. We find model output to be most sensitive to assumptions
+ concerning naturally acquired immunity, which allows us to estimate
+ the average duration of immunity. Our results support a period of
+ natural immunity that is, on average, long-lasting (at least 30 years)
+ but inherently variable.},
+ doi = {10.1371/journal.ppat.1000647},
+ file = {:Wearing2009.pdf:PDF},
+ institution = { Statistics, University of New Mexico, Albuquerque, New Mexico, USA.
+ hwearing at unm.edu},
+ language = {eng},
+ medline-pst = {ppublish},
+ owner = {kingaa},
+ pmid = {19876392},
+ timestamp = {2010.02.05}
+}
+
@comment{jabref-meta: selector_publisher:}
@comment{jabref-meta: selector_author:}
Modified: www/content/refs.htm
===================================================================
--- www/content/refs.htm 2010-05-16 16:34:15 UTC (rev 237)
+++ www/content/refs.htm 2010-05-17 12:54:41 UTC (rev 238)
@@ -1,4 +1,4 @@
-<h3>Bibliography</h3>
+<h3><a name="SECTIONREF">Bibliography</a></h3>
<dl compact>
<dt><a name="Arulampalam2002">M. S. Arulampalam, S. Maskell, N. Gordon, & T. Clapp (2002).</a></dt>
@@ -16,10 +16,10 @@
<dd>`Noise and nonlinearity in measles epidemics: Combining mechanistic and statistical approaches to population modeling.'<br>
<i>American Naturalist</i> <b>151</b>:425-440.<br></dd>
- <dt><a name="He2009">D. He, E. L. Ionides, & A. A. King (2009).</a></dt>
+ <dt><a name="He2010">D. He, E. L. Ionides, & A. A. King (2010).</a></dt>
<dd>`Plug-and-play inference for disease dynamics: measles in large and small populations as a case study.'<br>
- <i>Journal of The Royal Society Interface</i> p. in press.<br></dd>
+ <i>Journal of The Royal Society Interface</i> <b>7</b>:271-283.<br></dd>
<dt><a name="Ionides2006">E. L. Ionides, C. Bretó, & A. A. King (2006).</a></dt>
@@ -40,5 +40,4 @@
<dd>`Inapparent infections and cholera dynamics.'<br>
<i>Nature</i> <b>454</b>(7206):877-880.<br></dd>
-</dl><br>
-<hr>
+</dl>
Modified: www/index.php
===================================================================
--- www/index.php 2010-05-16 16:34:15 UTC (rev 237)
+++ www/index.php 2010-05-17 12:54:41 UTC (rev 238)
@@ -1,5 +1,4 @@
<?php
-
$domain=ereg_replace('[^\.]*\.(.*)$','\1',$_SERVER['HTTP_HOST']);
$group_name=ereg_replace('([^\.]*)\..*$','\1',$_SERVER['HTTP_HOST']);
$themeroot='http://r-forge.r-project.org/themes/rforge/';
@@ -23,7 +22,7 @@
<table border="0" width="80%" cellspacing="0" cellpadding="0">
<tr>
<td>
-<a href="/"><img src="<?php echo $themeroot; ?>/images/logo.png" border="0" alt="R-Forge Logo" /> </a>
+<a href="/"><img src="<?php echo $themeroot; ?>/imagesrf/logo.png" border="0" alt="R-Forge Logo" /> </a>
</td>
</tr>
</table>
More information about the pomp-commits
mailing list