* installing to library ‘/home/ripley/R/Lib32’
* installing *source* package ‘phylobase’ ...
** libs
CC -library=stlport4 -I/home/ripley/R/cc-devel/include -I. -DHAVE_INTTYPES_H -I/usr/local/include -I"/home/ripley/R/Lib32/Rcpp/include"   -KPIC  -O -features=tmplrefstatic -features=extensions -c GetNCL.cpp -o GetNCL.o
"/home/ripley/R/Lib32/Rcpp/include/Rcpp/stats/random/rnorm.h", line 87: Warning (Anachronism): Formal argument gen of type double(*)() in call to Rcpp::Vector<14>::Vector(const int&, double(*)()) is being passed extern "C" double(*)().
"/home/ripley/R/Lib32/Rcpp/include/Rcpp/stats/random/rnorm.h", line 111: Warning (Anachronism): Formal argument gen of type double(*)() in call to Rcpp::Vector<14>::Vector(const int&, double(*)()) is being passed extern "C" double(*)().
"/home/ripley/R/Lib32/Rcpp/include/Rcpp/stats/random/rnorm.h", line 122: Warning (Anachronism): Formal argument gen of type double(*)() in call to Rcpp::Vector<14>::Vector(const int&, double(*)()) is being passed extern "C" double(*)().
"/home/ripley/R/Lib32/Rcpp/include/Rcpp/stats/random/runif.h", line 70: Warning (Anachronism): Formal argument gen of type double(*)() in call to Rcpp::Vector<14>::Vector(const int&, double(*)()) is being passed extern "C" double(*)().
"/home/ripley/R/Lib32/Rcpp/include/Rcpp/stats/random/rgamma.h", line 36: Warning (Anachronism): Formal argument gen of type double(*)(double,double) in call to Rcpp::Vector<14>::Vector<double, double>(const int&, double(*)(double,double), const double&, const double&) is being passed extern "C" double(*)(double,double).
"/home/ripley/R/Lib32/Rcpp/include/Rcpp/stats/random/rbeta.h", line 31: Warning (Anachronism): Formal argument gen of type double(*)(double,double) in call to Rcpp::Vector<14>::Vector<double, double>(const int&, double(*)(double,double), const double&, const double&) is being passed extern "C" double(*)(double,double).
"/home/ripley/R/Lib32/Rcpp/include/Rcpp/stats/random/rt.h", line 59: Warning (Anachronism): Formal argument gen of type double(*)() in call to Rcpp::Vector<14>::Vector(const int&, double(*)()) is being passed extern "C" double(*)().
"/home/ripley/R/Lib32/Rcpp/include/Rcpp/stats/random/rbinom.h", line 31: Warning (Anachronism): Formal argument gen of type double(*)(double,double) in call to Rcpp::Vector<14>::Vector<double, double>(const int&, double(*)(double,double), const double&, const double&) is being passed extern "C" double(*)(double,double).
"/home/ripley/R/Lib32/Rcpp/include/Rcpp/stats/random/rexp.h", line 54: Warning (Anachronism): Formal argument gen of type double(*)() in call to Rcpp::Vector<14>::Vector(const int&, double(*)()) is being passed extern "C" double(*)().
"/home/ripley/R/Lib32/Rcpp/include/Rcpp/stats/random/rexp.h", line 58: Warning (Anachronism): Formal argument gen of type double(*)() in call to Rcpp::Vector<14>::Vector(const int&, double(*)()) is being passed extern "C" double(*)().
"/home/ripley/R/Lib32/Rcpp/include/Rcpp/stats/random/rpois.h", line 31: Warning (Anachronism): Formal argument gen of type double(*)(double) in call to Rcpp::Vector<14>::Vector<double>(const int&, double(*)(double), const double&) is being passed extern "C" double(*)(double).
"/home/ripley/R/Lib32/Rcpp/include/Rcpp/stats/random/rwilcox.h", line 31: Warning (Anachronism): Formal argument gen of type double(*)(double,double) in call to Rcpp::Vector<14>::Vector<double, double>(const int&, double(*)(double,double), const double&, const double&) is being passed extern "C" double(*)(double,double).
"/home/ripley/R/Lib32/Rcpp/include/Rcpp/stats/random/rsignrank.h", line 31: Warning (Anachronism): Formal argument gen of type double(*)(double) in call to Rcpp::Vector<14>::Vector<double>(const int&, double(*)(double), const double&) is being passed extern "C" double(*)(double).
"/home/ripley/R/Lib32/Rcpp/include/Rcpp/stats/random/rhyper.h", line 31: Warning (Anachronism): Formal argument gen of type double(*)(double,double,double) in call to Rcpp::Vector<14>::Vector<double, double, double>(const int&, double(*)(double,double,double), const double&, const double&, const double&) is being passed extern "C" double(*)(double,double,double).
"/home/ripley/R/Lib32/Rcpp/include/Rcpp/traits/is_convertible.h", line 40: Warning: A non-POD object of type "std::vector<std::string>" passed as a variable argument to function "static Rcpp::traits::is_convertible<std::vector<std::string>, SEXPREC*>::Test(...)".
"/home/ripley/R/Lib32/Rcpp/include/Rcpp/internal/wrap.h", line 654:     Where: While specializing "Rcpp::traits::is_convertible<std::vector<std::string>, SEXPREC*>".
"/home/ripley/R/Lib32/Rcpp/include/Rcpp/internal/wrap.h", line 654:     Where: Instantiated from Rcpp::internal::wrap_dispatch_eigen<std::vector<std::string>>(const std::vector<std::string>&, Rcpp::traits::integral_constant<bool, 0>).
"/home/ripley/R/Lib32/Rcpp/include/Rcpp/internal/wrap.h", line 670:     Where: Instantiated from Rcpp::internal::wrap_dispatch_unknown_importable<std::vector<std::string>>(const std::vector<std::string>&, Rcpp::traits::integral_constant<bool, 0>).
"/home/ripley/R/Lib32/Rcpp/include/Rcpp/internal/wrap.h", line 688:     Where: Instantiated from Rcpp::internal::wrap_dispatch<std::vector<std::string>>(const std::vector<std::string>&, Rcpp::traits::wrap_type_unknown_tag).
"/home/ripley/R/Lib32/Rcpp/include/Rcpp/internal/wrap.h", line 792:     Where: Instantiated from Rcpp::wrap<std::vector<std::string>>(const std::vector<std::string>&).
"/home/ripley/R/Lib32/Rcpp/include/Rcpp/vector/converter.h", line 69:     Where: Instantiated from static Rcpp::internal::generic_element_converter<19>::get<std::vector<std::string>>(const std::vector<std::string>&).
"/home/ripley/R/Lib32/Rcpp/include/Rcpp/vector/Vector.h", line 442:     Where: Instantiated from Rcpp::Vector<19>::push_back<std::vector<std::string>>(const std::vector<std::string>&).
"GetNCL.cpp", line 263:     Where: Instantiated from non-template code.
"/home/ripley/R/Lib32/Rcpp/include/Rcpp/traits/is_convertible.h", line 40: Warning: A non-POD object of type "std::vector<unsigned>" passed as a variable argument to function "static Rcpp::traits::is_convertible<std::vector<unsigned>, SEXPREC*>::Test(...)".
"/home/ripley/R/Lib32/Rcpp/include/Rcpp/internal/wrap.h", line 654:     Where: While specializing "Rcpp::traits::is_convertible<std::vector<unsigned>, SEXPREC*>".
"/home/ripley/R/Lib32/Rcpp/include/Rcpp/internal/wrap.h", line 654:     Where: Instantiated from Rcpp::internal::wrap_dispatch_eigen<std::vector<unsigned>>(const std::vector<unsigned>&, Rcpp::traits::integral_constant<bool, 0>).
"/home/ripley/R/Lib32/Rcpp/include/Rcpp/internal/wrap.h", line 670:     Where: Instantiated from Rcpp::internal::wrap_dispatch_unknown_importable<std::vector<unsigned>>(const std::vector<unsigned>&, Rcpp::traits::integral_constant<bool, 0>).
"/home/ripley/R/Lib32/Rcpp/include/Rcpp/internal/wrap.h", line 688:     Where: Instantiated from Rcpp::internal::wrap_dispatch<std::vector<unsigned>>(const std::vector<unsigned>&, Rcpp::traits::wrap_type_unknown_tag).
"/home/ripley/R/Lib32/Rcpp/include/Rcpp/internal/wrap.h", line 792:     Where: Instantiated from Rcpp::wrap<std::vector<unsigned>>(const std::vector<unsigned>&).
"/home/ripley/R/Lib32/Rcpp/include/Rcpp/vector/converter.h", line 69:     Where: Instantiated from static Rcpp::internal::generic_element_converter<19>::get<std::vector<unsigned>>(const std::vector<unsigned>&).
"/home/ripley/R/Lib32/Rcpp/include/Rcpp/vector/Vector.h", line 442:     Where: Instantiated from Rcpp::Vector<19>::push_back<std::vector<unsigned>>(const std::vector<unsigned>&).
"GetNCL.cpp", line 264:     Where: Instantiated from non-template code.
"/home/ripley/R/Lib32/Rcpp/include/Rcpp/traits/is_convertible.h", line 40: Warning: A non-POD object of type "std::vector<double>" passed as a variable argument to function "static Rcpp::traits::is_convertible<std::vector<double>, SEXPREC*>::Test(...)".
"/home/ripley/R/Lib32/Rcpp/include/Rcpp/internal/wrap.h", line 654:     Where: While specializing "Rcpp::traits::is_convertible<std::vector<double>, SEXPREC*>".
"/home/ripley/R/Lib32/Rcpp/include/Rcpp/internal/wrap.h", line 654:     Where: Instantiated from Rcpp::internal::wrap_dispatch_eigen<std::vector<double>>(const std::vector<double>&, Rcpp::traits::integral_constant<bool, 0>).
"/home/ripley/R/Lib32/Rcpp/include/Rcpp/internal/wrap.h", line 670:     Where: Instantiated from Rcpp::internal::wrap_dispatch_unknown_importable<std::vector<double>>(const std::vector<double>&, Rcpp::traits::integral_constant<bool, 0>).
"/home/ripley/R/Lib32/Rcpp/include/Rcpp/internal/wrap.h", line 688:     Where: Instantiated from Rcpp::internal::wrap_dispatch<std::vector<double>>(const std::vector<double>&, Rcpp::traits::wrap_type_unknown_tag).
"/home/ripley/R/Lib32/Rcpp/include/Rcpp/internal/wrap.h", line 792:     Where: Instantiated from Rcpp::wrap<std::vector<double>>(const std::vector<double>&).
"/home/ripley/R/Lib32/Rcpp/include/Rcpp/vector/converter.h", line 69:     Where: Instantiated from static Rcpp::internal::generic_element_converter<19>::get<std::vector<double>>(const std::vector<double>&).
"/home/ripley/R/Lib32/Rcpp/include/Rcpp/vector/Vector.h", line 442:     Where: Instantiated from Rcpp::Vector<19>::push_back<std::vector<double>>(const std::vector<double>&).
"GetNCL.cpp", line 265:     Where: Instantiated from non-template code.
"/home/ripley/R/Lib32/Rcpp/include/Rcpp/traits/is_convertible.h", line 40: Warning: A non-POD object of type "std::vector<bool>" passed as a variable argument to function "static Rcpp::traits::is_convertible<std::vector<bool>, SEXPREC*>::Test(...)".
"/home/ripley/R/Lib32/Rcpp/include/Rcpp/internal/wrap.h", line 654:     Where: While specializing "Rcpp::traits::is_convertible<std::vector<bool>, SEXPREC*>".
"/home/ripley/R/Lib32/Rcpp/include/Rcpp/internal/wrap.h", line 654:     Where: Instantiated from Rcpp::internal::wrap_dispatch_eigen<std::vector<bool>>(const std::vector<bool>&, Rcpp::traits::integral_constant<bool, 0>).
"/home/ripley/R/Lib32/Rcpp/include/Rcpp/internal/wrap.h", line 670:     Where: Instantiated from Rcpp::internal::wrap_dispatch_unknown_importable<std::vector<bool>>(const std::vector<bool>&, Rcpp::traits::integral_constant<bool, 0>).
"/home/ripley/R/Lib32/Rcpp/include/Rcpp/internal/wrap.h", line 688:     Where: Instantiated from Rcpp::internal::wrap_dispatch<std::vector<bool>>(const std::vector<bool>&, Rcpp::traits::wrap_type_unknown_tag).
"/home/ripley/R/Lib32/Rcpp/include/Rcpp/internal/wrap.h", line 792:     Where: Instantiated from Rcpp::wrap<std::vector<bool>>(const std::vector<bool>&).
"/home/ripley/R/Lib32/Rcpp/include/Rcpp/vector/converter.h", line 69:     Where: Instantiated from static Rcpp::internal::generic_element_converter<19>::get<std::vector<bool>>(const std::vector<bool>&).
"/home/ripley/R/Lib32/Rcpp/include/Rcpp/vector/Vector.h", line 526:     Where: Instantiated from static Rcpp::Vector<19>::replace_element__dispatch__isArgument<Rcpp::traits::named_object<std::vector<bool>>>(Rcpp::traits::integral_constant<bool, 0>, Rcpp::internal::Proxy_Iterator<Rcpp::internal::generic_proxy<19>>, SEXPREC*, int, const Rcpp::traits::named_object<std::vector<bool>>&).
"/home/ripley/R/Lib32/Rcpp/include/Rcpp/vector/Vector.h", line 519:     Where: Instantiated from static Rcpp::Vector<19>::replace_element__dispatch<Rcpp::traits::named_object<std::vector<bool>>>(Rcpp::traits::integral_constant<bool, 1>, Rcpp::internal::Proxy_Iterator<Rcpp::internal::generic_proxy<19>>, SEXPREC*, int, const Rcpp::traits::named_object<std::vector<bool>>&).
"/home/ripley/R/Lib32/Rcpp/include/Rcpp/vector/Vector.h", line 509:     Where: Instantiated from non-template code.
"/home/ripley/R/Lib32/Rcpp/include/Rcpp/traits/is_convertible.h", line 40: Warning: A non-POD object of type "std::vector<int>" passed as a variable argument to function "static Rcpp::traits::is_convertible<std::vector<int>, SEXPREC*>::Test(...)".
"/home/ripley/R/Lib32/Rcpp/include/Rcpp/internal/wrap.h", line 654:     Where: While specializing "Rcpp::traits::is_convertible<std::vector<int>, SEXPREC*>".
"/home/ripley/R/Lib32/Rcpp/include/Rcpp/internal/wrap.h", line 654:     Where: Instantiated from Rcpp::internal::wrap_dispatch_eigen<std::vector<int>>(const std::vector<int>&, Rcpp::traits::integral_constant<bool, 0>).
"/home/ripley/R/Lib32/Rcpp/include/Rcpp/internal/wrap.h", line 670:     Where: Instantiated from Rcpp::internal::wrap_dispatch_unknown_importable<std::vector<int>>(const std::vector<int>&, Rcpp::traits::integral_constant<bool, 0>).
"/home/ripley/R/Lib32/Rcpp/include/Rcpp/internal/wrap.h", line 688:     Where: Instantiated from Rcpp::internal::wrap_dispatch<std::vector<int>>(const std::vector<int>&, Rcpp::traits::wrap_type_unknown_tag).
"/home/ripley/R/Lib32/Rcpp/include/Rcpp/internal/wrap.h", line 792:     Where: Instantiated from Rcpp::wrap<std::vector<int>>(const std::vector<int>&).
"/home/ripley/R/Lib32/Rcpp/include/Rcpp/vector/converter.h", line 69:     Where: Instantiated from static Rcpp::internal::generic_element_converter<19>::get<std::vector<int>>(const std::vector<int>&).
"/home/ripley/R/Lib32/Rcpp/include/Rcpp/vector/Vector.h", line 526:     Where: Instantiated from static Rcpp::Vector<19>::replace_element__dispatch__isArgument<Rcpp::traits::named_object<std::vector<int>>>(Rcpp::traits::integral_constant<bool, 0>, Rcpp::internal::Proxy_Iterator<Rcpp::internal::generic_proxy<19>>, SEXPREC*, int, const Rcpp::traits::named_object<std::vector<int>>&).
"/home/ripley/R/Lib32/Rcpp/include/Rcpp/vector/Vector.h", line 519:     Where: Instantiated from non-template code.
19 Warning(s) detected.
cc -xc99 -I/home/ripley/R/cc-devel/include -I. -DHAVE_INTTYPES_H -I/usr/local/include -I"/home/ripley/R/Lib32/Rcpp/include"   -KPIC  -O -xlibmieee -c ancestors.c -o ancestors.o
cc -xc99 -I/home/ripley/R/cc-devel/include -I. -DHAVE_INTTYPES_H -I/usr/local/include -I"/home/ripley/R/Lib32/Rcpp/include"   -KPIC  -O -xlibmieee -c descendants.c -o descendants.o
CC -library=stlport4 -I/home/ripley/R/cc-devel/include -I. -DHAVE_INTTYPES_H -I/usr/local/include -I"/home/ripley/R/Lib32/Rcpp/include"   -KPIC  -O -features=tmplrefstatic -features=extensions -c nxsassumptionsblock.cpp -o nxsassumptionsblock.o
"./ncl/nxsstring.h", line 467: Error: The function "sprintf" must have a prototype.
"./ncl/nxsstring.h", line 502: Error: The function "sprintf" must have a prototype.
"./ncl/nxsstring.h", line 514: Error: The function "sprintf" must have a prototype.
"./ncl/nxsstring.h", line 526: Error: The function "sprintf" must have a prototype.
"./ncl/nxsstring.h", line 541: Error: The function "strcmp" must have a prototype.
"./ncl/nxsstring.h", line 572: Error: The function "strchr" must have a prototype.
"./ncl/nxsstring.h", line 673: Error: The function "memmove" must have a prototype.
"./ncl/nxstoken.h", line 311: Error: The function "strcmp" must have a prototype.
"./ncl/nxstoken.h", line 393: Error: The function "strcmp" must have a prototype.
"./ncl/nxstoken.h", line 603: Error: The function "strchr" must have a prototype.
"./ncl/nxstoken.h", line 857: Error: The function "strcmp" must have a prototype.
11 Error(s) detected.
*** Error code 2
make: Fatal error: Command failed for target `nxsassumptionsblock.o'
Current working directory /tmp/RtmpX5ZI9q/R.INSTALL1c032ec0/phylobase/src
ERROR: compilation failed for package ‘phylobase’
* removing ‘/home/ripley/R/Lib32/phylobase’

real       50.7
user       48.4
sys         1.9