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Hi Everyone,<div><br></div><div>For a brief while, all was fine in Mac binary land. But alas! No more...</div><div><br></div><div>Is anyone else having problems with R 2.7.1 or 2.7.0? I have found that read.nexus from ape does not work, as well as some odd NA-remove behavior in some statistical function. So I've decided to remain downgraded to R 2.6.2 (patched). </div><div><br></div><div>The binaries were available on the r-forge site for a while, but not anymore. But my problem is that I can't even install from source. When I did R CMD check on the package, I get one warning:</div><div><br></div><div>====</div><div><div>* checking if this is a source package ... WARNING</div><div>Subdirectory 'pkg/src' contains object files.</div><div>====</div><div><br></div><div>I found "phylobase.so" in pkg/src. Is this supposed to be there? It might be the culprit because the error I get when I try to load phylobase is: </div><div><br></div></div><div><div>> require(phylobase)</div><div>Loading required package: phylobase</div><div>Error in dyn.load(file, ...) : </div><div> unable to load shared library '/Library/Frameworks/R.framework/Resources/library/phylobase/libs/i386/phylobase.so':</div><div> dlopen(/Library/Frameworks/R.framework/Resources/library/phylobase/libs/i386/phylobase.so, 6): Library not loaded: /Library/Frameworks/R.framework/Versions/2.7/Resources/lib/libR.dylib</div><div> Referenced from: /Library/Frameworks/R.framework/Resources/library/phylobase/libs/i386/phylobase.so</div><div> Reason: image not found</div><div><br></div><div>Which doesn't make a whole lot of sense since I'm installing from source on R 2.6.2.</div><div><br></div><div>So I went back and removed the "phylobase.so" from the pkg/src directory (the version I got from the svn repository -- revision 192), and tried rebuilding. It passed the check this time, so I installed. But when I try loading, I still get the same error above from my require(phylobase) command??</div><div><br></div><div>Has anyone else had problems? </div><div><br></div><div>I don't think it's entirely a 2.6.2 issue because I don't think it's working for the 2.7.X versions either, otherwise wouldn't there be binaries available?</div><div><br></div><div>I am preparing for the NESCENT course, so this is pretty urgent. Any help would be greatly appreciated.</div><div><br></div><div>Marguerite</div></div><div><div> <span class="Apple-style-span" style="border-collapse: separate; border-spacing: 0px 0px; color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; text-align: auto; -khtml-text-decorations-in-effect: none; text-indent: 0px; -apple-text-size-adjust: auto; text-transform: none; orphans: 2; white-space: normal; widows: 2; word-spacing: 0px; "><span class="Apple-style-span" style="border-collapse: separate; border-spacing: 0px 0px; color: rgb(0, 0, 0); font-family: Lucida Grande; font-size: 13px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; text-align: auto; -khtml-text-decorations-in-effect: none; text-indent: 0px; -apple-text-size-adjust: auto; text-transform: none; orphans: 2; white-space: normal; widows: 2; word-spacing: 0px; "><span class="Apple-style-span" style="border-collapse: separate; border-spacing: 0px 0px; color: rgb(0, 0, 0); font-family: Lucida Grande; font-size: 13px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; text-align: auto; -khtml-text-decorations-in-effect: none; text-indent: 0px; -apple-text-size-adjust: auto; text-transform: none; orphans: 2; white-space: normal; widows: 2; word-spacing: 0px; "><div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; ; font-size: 12px; ; font-family: Lucida Grande; "><span class="Apple-style-span" style="font-size: 12px; ; font-family: Lucida Grande; "><span class="Apple-style-span" style="font-size: 12px; ; font-family: Lucida Grande; "><span class="Apple-style-span" style="font-family: Lucida Grande; ">____________________________________________</span></span></span></div><div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; ; font-size: 12px; ; font-family: Lucida Grande; "><span class="Apple-style-span" style="font-size: 12px; ; font-family: Lucida Grande; "><span class="Apple-style-span" style="font-size: 12px; ; font-family: Lucida Grande; "><span class="Apple-style-span" style="font-family: Lucida Grande; ">Marguerite A. Butler</span></span></span></div><div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; ; font-size: 12px; ; font-family: Lucida Grande; "><span class="Apple-style-span" style="font-size: 12px; ; font-family: Lucida Grande; "><span class="Apple-style-span" style="font-size: 12px; ; font-family: Lucida Grande; "><span class="Apple-style-span" style="font-family: Lucida Grande; ">Department of Zoology</span></span></span></div><div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; ; font-size: 12px; ; font-family: Lucida Grande; "><span class="Apple-style-span" style="font-size: 12px; ; font-family: Lucida Grande; "><span class="Apple-style-span" style="font-size: 12px; ; font-family: Lucida Grande; "><span class="Apple-style-span" style="font-family: Lucida Grande; ">University of Hawaii</span></span></span></div><div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; ; font-size: 12px; ; font-family: Lucida Grande; "><font class="Apple-style-span" size="3"><span class="Apple-style-span" style="font-size: 13px;; font-family: Lucida Grande; "><span class="Apple-style-span" style="font-family: Lucida Grande; font-size: 13px; ">2538 McCarthy Mall, Edmondson 259</span></span></font></div><div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; font: normal normal normal 12px/normal Helvetica; min-height: 14px; ; font-family: Helvetica; ; font-size: 12px; "><span class="Apple-style-span" style="font-family: Helvetica; font-size: 12px; "><span class="Apple-style-span" style="font-family: Helvetica; font-size: 12px; ">Honolulu, HI 96822</span></span><br style="; font-family: Helvetica; ; font-size: 12px; "></div><div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; font: normal normal normal 12px/normal Helvetica; min-height: 14px; font-family: Helvetica; ; font-family: Helvetica; ; font-size: 12px; "><br class="khtml-block-placeholder"></div><div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; ; font-size: 12px; ; font-family: Lucida Grande; "><span class="Apple-style-span" style="font-size: 12px; ; font-family: Lucida Grande; "><span class="Apple-style-span" style="font-size: 12px; ; font-family: Lucida Grande; "><span class="Apple-style-span" style="font-family: Lucida Grande; ">Phone: 808-956-4713</span></span></span></div><div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; ; font-size: 12px; ; font-family: Lucida Grande; "><span class="Apple-style-span" style="font-size: 12px; ; font-family: Lucida Grande; "><span class="Apple-style-span" style="font-size: 12px; ; font-family: Lucida Grande; "><span class="Apple-style-span" style="font-family: Lucida Grande; ">FAX: 808-956-9812</span></span></span></div><div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; ; font-size: 12px; ; font-family: Lucida Grande; "><span class="Apple-style-span" style="font-family: Lucida Grande; ">Dept: 808-956-8617</span></div><div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; ; font-size: 12px; ; font-family: Lucida Grande; "><span class="Apple-style-span" style="font-size: 12px; ; font-family: Lucida Grande; "><span class="Apple-style-span" style="font-size: 12px; ; font-family: Lucida Grande; "><span class="Apple-style-span" style="font-family: Lucida Grande; "><a href="http://www2.hawaii.edu/~mbutler">http://www2.hawaii.edu/~mbutler</a></span></span></span></div><span class="Apple-style-span" style="font-family: Lucida Grande; font-size: 13px; "><a href="http://www.hawaii.edu/zoology/">http://www.hawaii.edu/zoology/</a></span><br class="Apple-interchange-newline"></span></span></span> </div><br></div></body></html>