[Mattice-commits] r96 - pkg/DATA

noreply at r-forge.r-project.org noreply at r-forge.r-project.org
Fri Dec 19 03:52:01 CET 2008


Author: andrew_hipp
Date: 2008-12-19 03:52:01 +0100 (Fri, 19 Dec 2008)
New Revision: 96

Added:
   pkg/DATA/carex.R
Removed:
   pkg/DATA/carex
Log:
renamed carex.R so it should be recognized on building

Deleted: pkg/DATA/carex
===================================================================
--- pkg/DATA/carex	2008-12-19 02:48:47 UTC (rev 95)
+++ pkg/DATA/carex	2008-12-19 02:52:01 UTC (rev 96)
@@ -1,108 +0,0 @@
-structure(list(tree = structure(list(edge = structure(c(54L, 
-55L, 55L, 56L, 56L, 54L, 57L, 58L, 58L, 59L, 59L, 57L, 60L, 61L, 
-62L, 63L, 63L, 64L, 64L, 62L, 61L, 65L, 65L, 60L, 66L, 67L, 67L, 
-66L, 68L, 68L, 69L, 70L, 71L, 72L, 73L, 73L, 74L, 75L, 75L, 74L, 
-76L, 76L, 77L, 77L, 72L, 78L, 79L, 79L, 80L, 80L, 81L, 81L, 82L, 
-82L, 83L, 83L, 78L, 84L, 85L, 86L, 86L, 85L, 87L, 88L, 88L, 89L, 
-90L, 90L, 89L, 91L, 91L, 87L, 92L, 92L, 93L, 93L, 84L, 94L, 94L, 
-71L, 95L, 95L, 70L, 96L, 97L, 98L, 98L, 97L, 99L, 99L, 100L, 
-101L, 101L, 100L, 102L, 102L, 96L, 103L, 103L, 104L, 104L, 69L, 
-105L, 105L, 55L, 1L, 56L, 2L, 3L, 57L, 58L, 4L, 59L, 5L, 6L, 
-60L, 61L, 62L, 63L, 7L, 64L, 8L, 9L, 10L, 65L, 11L, 12L, 66L, 
-67L, 13L, 14L, 68L, 15L, 69L, 70L, 71L, 72L, 73L, 16L, 74L, 75L, 
-17L, 18L, 76L, 19L, 77L, 20L, 21L, 78L, 79L, 22L, 80L, 23L, 81L, 
-24L, 82L, 25L, 83L, 26L, 27L, 84L, 85L, 86L, 28L, 29L, 87L, 88L, 
-30L, 89L, 90L, 31L, 32L, 91L, 33L, 34L, 92L, 35L, 93L, 36L, 37L, 
-94L, 38L, 39L, 95L, 40L, 41L, 96L, 97L, 98L, 42L, 43L, 99L, 44L, 
-100L, 101L, 45L, 46L, 102L, 47L, 48L, 103L, 49L, 104L, 50L, 51L, 
-105L, 52L, 53L), .Dim = c(104L, 2L)), edge.length = c(0.131608041, 
-0.868391959, 0.4774298606, 0.3909620984, 0.3909620984, 0.0376523746, 
-0.0915148608, 0.8708327646, 0.228673604, 0.6421591606, 0.6421591606, 
-0.03047094, 0.197188661, 0.3667080933, 0.1187924864, 0.2491874447, 
-0.0680851795, 0.1811022651, 0.1811022651, 0.3679799311, 0.2879776585, 
-0.4467103659, 0.4467103659, 0.0760667065, 0.2546030817, 0.6012068973, 
-0.6012068973, 0.0734898564, 0.7823201225, 0.0354531643, 0.0805067273, 
-0.1044180282, 0.1470105274, 0.0657037966, 0.3492278788, 0.119097461, 
-0.0354160188, 0.194714399, 0.194714399, 0.0351340264, 0.1949963914, 
-0.0734473345, 0.1215490569, 0.1215490569, 0.0370307146, 0.0478702765, 
-0.3300306842, 0.1023596238, 0.2276710604, 0.0531080597, 0.1745630008, 
-0.0755096136, 0.0990533872, 0.0744081089, 0.0246452783, 0.0246452783, 
-0.0339921757, 0.0610205014, 0.1472200431, 0.1356682405, 0.1356682405, 
-0.055626089, 0.053885115, 0.1733770795, 0.0401682819, 0.0513531937, 
-0.0818556039, 0.0818556039, 0.0352913046, 0.0979174931, 0.0979174931, 
-0.0400989858, 0.1871632087, 0.0547825691, 0.1323806396, 0.1323806396, 
-0.0591487349, 0.2847600501, 0.2847600501, 0.0421214255, 0.5198207772, 
-0.5198207772, 0.0696998161, 0.2044319398, 0.1668478906, 0.2253805845, 
-0.2253805845, 0.0732033467, 0.3190251283, 0.1229909423, 0.1015139286, 
-0.0945202574, 0.0945202574, 0.034953098, 0.161081088, 0.161081088, 
-0.1165220723, 0.4801383425, 0.3700801096, 0.1100582329, 0.1100582329, 
-0.0946612554, 0.6522057028, 0.6522057028), Nnode = 52L, tip.label = c("argyrantha", 
-"preslii", "phaeocephala", "bohemica", "foenea", "praticola", 
-"ebenea", "haydeniana", "microptera", "peucophila", "integra", 
-"subfusca", "macloviana", "pachystachya", "adusta", "cumulata", 
-"hyalina", "brevior", "reniformis", "molestiformis", "shinnersii", 
-"opaca", "crawfordii", "bebbii", "cristatella", "projecta", "tribuloidesVtribuloides", 
-"buffaloriver", "teneraVechinodes", "missouriensis", "teneraVtenera", 
-"tincta", "festucacea", "oronensis", "muskingumensis", "bicknellii", 
-"merrittfernaldii", "molesta", "normalis", "ovalis3098", "feta", 
-"longii", "vexans", "alata", "scopariaVscoparia", "scopariaVtessellata", 
-"albolutescens", "suberecta", "ozarkana", "hormathodes", "straminea", 
-"xerantica", "athrostachya")), .Names = c("edge", "edge.length", 
-"Nnode", "tip.label"), class = "phylo", origin = "bayes.tre"), 
-    dat = structure(c(4.382026635, 4.369447852, 4.430816799, 
-    4.382026635, 4.414856779, 4.336767728, 4.430816799, 4.406719247, 
-    4.384274107, 4.304065093, 4.406719247, 4.430816799, 4.454347296, 
-    4.363862664, 4.356708827, 4.048824047, 4.304065093, 4.085976313, 
-    4.382026635, 4.272630208, 4.099829492, 4.201703081, 4.222151267, 
-    4.229312423, 4.248495242, 4.158883083, 4.25561271, 4.248495242, 
-    4.335982696, 3.947003974, 3.999117712, 4.317488114, 4.243769809, 
-    4.304065093, 4.382026635, 4.33073334, 4.276666119, 4.227855121, 
-    4.236133434, 4.175770928, 4.189654742, 4.107589789, 4.237723145, 
-    4.304065093, 4.159976236, 4.219507705, 4.189654742, 4.276666119, 
-    4.077537444, 4.304065093, 4.304065093, 4.219507705, 4.219507705
-    ), .Names = c("argyrantha", "preslii", "phaeocephala", "bohemica", 
-    "foenea", "praticola", "ebenea", "haydeniana", "microptera", 
-    "peucophila", "integra", "subfusca", "macloviana", "pachystachya", 
-    "adusta", "cumulata", "hyalina", "brevior", "reniformis", 
-    "molestiformis", "shinnersii", "opaca", "crawfordii", "bebbii", 
-    "cristatella", "projecta", "tribuloidesVtribuloides", "buffaloriver", 
-    "teneraVechinodes", "missouriensis", "teneraVtenera", "tincta", 
-    "festucacea", "oronensis", "muskingumensis", "bicknellii", 
-    "merrittfernaldii", "molesta", "normalis", "ovalis3098", 
-    "feta", "longii", "vexans", "alata", "scopariaVscoparia", 
-    "scopariaVtessellata", "albolutescens", "suberecta", "ozarkana", 
-    "hormathodes", "straminea", "xerantica", "athrostachya")), 
-    nodes = list(c("alata", "albolutescens", "bebbii", "bicknellii", 
-    "brevior", "buffaloriver", "crawfordii", "cristatella", "cumulata", 
-    "festucacea", "feta", "hormathodes", "hyalina", "longii", 
-    "merrittfernaldii", "missouriensis", "molesta", "molestiformis", 
-    "muskingumensis", "normalis", "opaca", "oronensis", "ovalis3098", 
-    "ozarkana", "projecta", "reniformis", "scopariaVscoparia", 
-    "scopariaVtessellata", "shinnersii", "straminea", "suberecta", 
-    "teneraVechinodes", "teneraVtenera", "tincta", "tribuloidesVtribuloides", 
-    "vexans", "adusta", "athrostachya", "pachystachya", "xerantica", 
-    "macloviana"), c("alata", "albolutescens", "bebbii", "bicknellii", 
-    "brevior", "buffaloriver", "crawfordii", "cristatella", "cumulata", 
-    "festucacea", "feta", "hormathodes", "hyalina", "longii", 
-    "merrittfernaldii", "missouriensis", "molesta", "molestiformis", 
-    "muskingumensis", "normalis", "opaca", "oronensis", "ovalis3098", 
-    "ozarkana", "projecta", "reniformis", "scopariaVscoparia", 
-    "scopariaVtessellata", "shinnersii", "straminea", "suberecta", 
-    "teneraVechinodes", "teneraVtenera", "tincta", "tribuloidesVtribuloides", 
-    "vexans"), c("bebbii", "bicknellii", "brevior", "buffaloriver", 
-    "crawfordii", "cristatella", "cumulata", "festucacea", "hyalina", 
-    "merrittfernaldii", "missouriensis", "molesta", "molestiformis", 
-    "muskingumensis", "normalis", "opaca", "oronensis", "projecta", 
-    "reniformis", "shinnersii", "teneraVechinodes", "teneraVtenera", 
-    "tincta", "tribuloidesVtribuloides", "feta", "ovalis3098"
-    ), c("bebbii", "bicknellii", "brevior", "buffaloriver", "crawfordii", 
-    "cristatella", "cumulata", "festucacea", "hyalina", "merrittfernaldii", 
-    "missouriensis", "molesta", "molestiformis", "muskingumensis", 
-    "normalis", "opaca", "oronensis", "projecta", "reniformis", 
-    "shinnersii", "teneraVechinodes", "teneraVtenera", "tincta", 
-    "tribuloidesVtribuloides"), c("brevior", "hyalina", "molestiformis", 
-    "reniformis", "shinnersii"), c("suberecta", "albolutescens", 
-    "scopariaVscoparia", "scopariaVtessellata", "alata", "vexans", 
-    "longii"), c("subfusca", "integra", "peucophila", "microptera", 
-    "haydeniana", "ebenea"), c("phaeocephala", "preslii", "argyrantha"
-    ))), .Names = c("tree", "dat", "nodes"))

Added: pkg/DATA/carex.R
===================================================================
--- pkg/DATA/carex.R	                        (rev 0)
+++ pkg/DATA/carex.R	2008-12-19 02:52:01 UTC (rev 96)
@@ -0,0 +1,108 @@
+structure(list(tree = structure(list(edge = structure(c(54L, 
+55L, 55L, 56L, 56L, 54L, 57L, 58L, 58L, 59L, 59L, 57L, 60L, 61L, 
+62L, 63L, 63L, 64L, 64L, 62L, 61L, 65L, 65L, 60L, 66L, 67L, 67L, 
+66L, 68L, 68L, 69L, 70L, 71L, 72L, 73L, 73L, 74L, 75L, 75L, 74L, 
+76L, 76L, 77L, 77L, 72L, 78L, 79L, 79L, 80L, 80L, 81L, 81L, 82L, 
+82L, 83L, 83L, 78L, 84L, 85L, 86L, 86L, 85L, 87L, 88L, 88L, 89L, 
+90L, 90L, 89L, 91L, 91L, 87L, 92L, 92L, 93L, 93L, 84L, 94L, 94L, 
+71L, 95L, 95L, 70L, 96L, 97L, 98L, 98L, 97L, 99L, 99L, 100L, 
+101L, 101L, 100L, 102L, 102L, 96L, 103L, 103L, 104L, 104L, 69L, 
+105L, 105L, 55L, 1L, 56L, 2L, 3L, 57L, 58L, 4L, 59L, 5L, 6L, 
+60L, 61L, 62L, 63L, 7L, 64L, 8L, 9L, 10L, 65L, 11L, 12L, 66L, 
+67L, 13L, 14L, 68L, 15L, 69L, 70L, 71L, 72L, 73L, 16L, 74L, 75L, 
+17L, 18L, 76L, 19L, 77L, 20L, 21L, 78L, 79L, 22L, 80L, 23L, 81L, 
+24L, 82L, 25L, 83L, 26L, 27L, 84L, 85L, 86L, 28L, 29L, 87L, 88L, 
+30L, 89L, 90L, 31L, 32L, 91L, 33L, 34L, 92L, 35L, 93L, 36L, 37L, 
+94L, 38L, 39L, 95L, 40L, 41L, 96L, 97L, 98L, 42L, 43L, 99L, 44L, 
+100L, 101L, 45L, 46L, 102L, 47L, 48L, 103L, 49L, 104L, 50L, 51L, 
+105L, 52L, 53L), .Dim = c(104L, 2L)), edge.length = c(0.131608041, 
+0.868391959, 0.4774298606, 0.3909620984, 0.3909620984, 0.0376523746, 
+0.0915148608, 0.8708327646, 0.228673604, 0.6421591606, 0.6421591606, 
+0.03047094, 0.197188661, 0.3667080933, 0.1187924864, 0.2491874447, 
+0.0680851795, 0.1811022651, 0.1811022651, 0.3679799311, 0.2879776585, 
+0.4467103659, 0.4467103659, 0.0760667065, 0.2546030817, 0.6012068973, 
+0.6012068973, 0.0734898564, 0.7823201225, 0.0354531643, 0.0805067273, 
+0.1044180282, 0.1470105274, 0.0657037966, 0.3492278788, 0.119097461, 
+0.0354160188, 0.194714399, 0.194714399, 0.0351340264, 0.1949963914, 
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+0.3300306842, 0.1023596238, 0.2276710604, 0.0531080597, 0.1745630008, 
+0.0755096136, 0.0990533872, 0.0744081089, 0.0246452783, 0.0246452783, 
+0.0339921757, 0.0610205014, 0.1472200431, 0.1356682405, 0.1356682405, 
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+0.5198207772, 0.0696998161, 0.2044319398, 0.1668478906, 0.2253805845, 
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+0.0945202574, 0.0945202574, 0.034953098, 0.161081088, 0.161081088, 
+0.1165220723, 0.4801383425, 0.3700801096, 0.1100582329, 0.1100582329, 
+0.0946612554, 0.6522057028, 0.6522057028), Nnode = 52L, tip.label = c("argyrantha", 
+"preslii", "phaeocephala", "bohemica", "foenea", "praticola", 
+"ebenea", "haydeniana", "microptera", "peucophila", "integra", 
+"subfusca", "macloviana", "pachystachya", "adusta", "cumulata", 
+"hyalina", "brevior", "reniformis", "molestiformis", "shinnersii", 
+"opaca", "crawfordii", "bebbii", "cristatella", "projecta", "tribuloidesVtribuloides", 
+"buffaloriver", "teneraVechinodes", "missouriensis", "teneraVtenera", 
+"tincta", "festucacea", "oronensis", "muskingumensis", "bicknellii", 
+"merrittfernaldii", "molesta", "normalis", "ovalis3098", "feta", 
+"longii", "vexans", "alata", "scopariaVscoparia", "scopariaVtessellata", 
+"albolutescens", "suberecta", "ozarkana", "hormathodes", "straminea", 
+"xerantica", "athrostachya")), .Names = c("edge", "edge.length", 
+"Nnode", "tip.label"), class = "phylo", origin = "bayes.tre"), 
+    dat = structure(c(4.382026635, 4.369447852, 4.430816799, 
+    4.382026635, 4.414856779, 4.336767728, 4.430816799, 4.406719247, 
+    4.384274107, 4.304065093, 4.406719247, 4.430816799, 4.454347296, 
+    4.363862664, 4.356708827, 4.048824047, 4.304065093, 4.085976313, 
+    4.382026635, 4.272630208, 4.099829492, 4.201703081, 4.222151267, 
+    4.229312423, 4.248495242, 4.158883083, 4.25561271, 4.248495242, 
+    4.335982696, 3.947003974, 3.999117712, 4.317488114, 4.243769809, 
+    4.304065093, 4.382026635, 4.33073334, 4.276666119, 4.227855121, 
+    4.236133434, 4.175770928, 4.189654742, 4.107589789, 4.237723145, 
+    4.304065093, 4.159976236, 4.219507705, 4.189654742, 4.276666119, 
+    4.077537444, 4.304065093, 4.304065093, 4.219507705, 4.219507705
+    ), .Names = c("argyrantha", "preslii", "phaeocephala", "bohemica", 
+    "foenea", "praticola", "ebenea", "haydeniana", "microptera", 
+    "peucophila", "integra", "subfusca", "macloviana", "pachystachya", 
+    "adusta", "cumulata", "hyalina", "brevior", "reniformis", 
+    "molestiformis", "shinnersii", "opaca", "crawfordii", "bebbii", 
+    "cristatella", "projecta", "tribuloidesVtribuloides", "buffaloriver", 
+    "teneraVechinodes", "missouriensis", "teneraVtenera", "tincta", 
+    "festucacea", "oronensis", "muskingumensis", "bicknellii", 
+    "merrittfernaldii", "molesta", "normalis", "ovalis3098", 
+    "feta", "longii", "vexans", "alata", "scopariaVscoparia", 
+    "scopariaVtessellata", "albolutescens", "suberecta", "ozarkana", 
+    "hormathodes", "straminea", "xerantica", "athrostachya")), 
+    nodes = list(c("alata", "albolutescens", "bebbii", "bicknellii", 
+    "brevior", "buffaloriver", "crawfordii", "cristatella", "cumulata", 
+    "festucacea", "feta", "hormathodes", "hyalina", "longii", 
+    "merrittfernaldii", "missouriensis", "molesta", "molestiformis", 
+    "muskingumensis", "normalis", "opaca", "oronensis", "ovalis3098", 
+    "ozarkana", "projecta", "reniformis", "scopariaVscoparia", 
+    "scopariaVtessellata", "shinnersii", "straminea", "suberecta", 
+    "teneraVechinodes", "teneraVtenera", "tincta", "tribuloidesVtribuloides", 
+    "vexans", "adusta", "athrostachya", "pachystachya", "xerantica", 
+    "macloviana"), c("alata", "albolutescens", "bebbii", "bicknellii", 
+    "brevior", "buffaloriver", "crawfordii", "cristatella", "cumulata", 
+    "festucacea", "feta", "hormathodes", "hyalina", "longii", 
+    "merrittfernaldii", "missouriensis", "molesta", "molestiformis", 
+    "muskingumensis", "normalis", "opaca", "oronensis", "ovalis3098", 
+    "ozarkana", "projecta", "reniformis", "scopariaVscoparia", 
+    "scopariaVtessellata", "shinnersii", "straminea", "suberecta", 
+    "teneraVechinodes", "teneraVtenera", "tincta", "tribuloidesVtribuloides", 
+    "vexans"), c("bebbii", "bicknellii", "brevior", "buffaloriver", 
+    "crawfordii", "cristatella", "cumulata", "festucacea", "hyalina", 
+    "merrittfernaldii", "missouriensis", "molesta", "molestiformis", 
+    "muskingumensis", "normalis", "opaca", "oronensis", "projecta", 
+    "reniformis", "shinnersii", "teneraVechinodes", "teneraVtenera", 
+    "tincta", "tribuloidesVtribuloides", "feta", "ovalis3098"
+    ), c("bebbii", "bicknellii", "brevior", "buffaloriver", "crawfordii", 
+    "cristatella", "cumulata", "festucacea", "hyalina", "merrittfernaldii", 
+    "missouriensis", "molesta", "molestiformis", "muskingumensis", 
+    "normalis", "opaca", "oronensis", "projecta", "reniformis", 
+    "shinnersii", "teneraVechinodes", "teneraVtenera", "tincta", 
+    "tribuloidesVtribuloides"), c("brevior", "hyalina", "molestiformis", 
+    "reniformis", "shinnersii"), c("suberecta", "albolutescens", 
+    "scopariaVscoparia", "scopariaVtessellata", "alata", "vexans", 
+    "longii"), c("subfusca", "integra", "peucophila", "microptera", 
+    "haydeniana", "ebenea"), c("phaeocephala", "preslii", "argyrantha"
+    ))), .Names = c("tree", "dat", "nodes"))



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