[Mattice-commits] r79 - pkg

[noreply at r-forge.r-project.org]

Author: andrew_hipp
Date: 2008-12-11 21:22:58 +0100 (Thu, 11 Dec 2008)
New Revision: 79

Modified:
   pkg/TODO
Log:
updated todo

Modified: pkg/TODO
===================================================================
--- pkg/TODO	2008-12-11 15:04:21 UTC (rev 78)
+++ pkg/TODO	2008-12-11 20:22:58 UTC (rev 79)
@@ -1,2 +1,9 @@
 1. make allPossibleRegimes more efficient when maxNodes < length(nodes)
-2. is the k-matrix a sensible statistic? fix it so it works on the revised batchHansen
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+2. DROP or AVERAGE: is the k-matrix a sensible statistic? fix it so it works on the revised batchHansen
+3. change paintBranches so that it automatically adds the root and knows what to do if it is handed a list of node vectors instead of a vector of nodes
+4. make plot.ouSim smart enough to paint the branches according to the theta vector if no colors are provided
+5. make a "simulate" method for a hansenBatch object that simulates the data using model-averaged parameters (including theta)
+6. make paintBranches return a complete regime ready to plug into hansen, and modify calling functions accordingly
+7. give plot.ouSim a way to highlight or circle or otherwise set off changeNodes 
+8. make it easy to pass colors into plot.ouSim... the regime should pop out easily
+9. make it possible to pass in a vector of lty or lwd to plot.ouSim so the branches can be different widths or patterns
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