[inlinedocs] inlinedocs setClass

[David Gibbs]

Hi there,

When using package.skeleton.dx("myPkg") with the setClass method,
the title field is not being written to the Rd file.  Without the title, the check
function complains and quits.  I'm on OS X Lion, btw.

Maybe an additional argument not to clobber existing files would be nice.
Then I wouldn't have to fix this over and over.

Thanks!!  Let me know if you need any additional info.
-dave


Here's what's happening:


setClass("pepnet",
         ### The pepnet class will hold all the results from peptide network calculations
         representation(adjmat = "matrix", ##<< the adjacency matrix
                        tom = "matrix",    ##<< the topological overlap matrix
                        peptides = "character" ##<< the names of the peptides 
		)
         )



> package.skeleton.dx("RPepCor/")
extra.code.docs prefixed.lines extract.xxx.chunks title.from.firstline examples.from.testfile definition.from.source edit.package.file author.from.description erase.format title.from.name examples.in.attr collapse tag.s3methods 
Creating directories ...
Creating DESCRIPTION ...
Creating Read-and-delete-me ...
Copying code files ...
Making help files ...
Done.
Further steps are described in './RPepCor/Read-and-delete-me'.
Modifying files automatically generated by package.skeleton:
c2i: definition description item{nrows} item{x} item{y} value author format title
compareModules: definition description value item{net1} item{net2} item{pep1} item{pep2} author format title
i2c: definition description item{nrows} item{i} value author format title
i2col: definition description item{nrows} item{i} value author format title
pepNames: definition description value item{p} author format title
pepnet-class: item{adjmat} item{tom} item{peptides} title description details section{Objects from the Class} seealso alias author format
RPepCor-package: title description tabular{ll} author format




\name{pepnet-class}
\Rdversion{1.1}
\docType{class}
\alias{pepnet-class}
\alias{pepnet}
\alias{names,pepnet-method}


\description{The pepcor class will hold all the results from peptide network calculations}
\section{Objects from the Class}{Objects can be created by calls of the form \code{new(pepnet ...)}}
\section{Slots}{
  \describe{
    \item{\code{adjmat}:}{(\code{matrix}) the adjacency matrix}
    \item{\code{tom}:}{(\code{matrix}) the topological overlap matrix}
    \item{\code{peptides}:}{(\code{character}) the names of the peptides, usually AMT IDs}
  }
}
\section{Methods}{
  \describe{
    \item{names}{\code{signature(x = "pepnet")}: ... }
         }
}

\author{David Gibbs <gibbsdavidl at gmail.com>}