From ozcanezgi88 at gmail.com Thu Nov 12 18:58:24 2020 From: ozcanezgi88 at gmail.com (=?UTF-8?Q?Ezgi_=C3=96zcan?=) Date: Thu, 12 Nov 2020 12:58:24 -0500 Subject: [genoPlotR-help] adding contigs to the gene comparison Message-ID: Hi, I am using genoplotR to plot arrow comparisons for four genomes. One is type strain complete sequence and the other 3 are draft genomes, therefore, they are in contigs. The genes of interest reside in different contigs in my draft genomes. Here is an example for one of the genomes below. As you can see some genes are overlapping positions if we dont consider the contigs. Can you help me how to add contigs into my figures? I have also attached a comparison map to the type strain. Thank you for your help, UCD301 start end position contig 977 1999 + 37 3 908 + 37 5743 6337 + 32 4614 5693 + 32 2332 4587 + 32 1162 2112 + 32 191 1162 + 32 441 1757 + 311 Ezgi Özcan Post-Doctoral Researcher University of Massachusetts Amherst selalab.org -------------- next part -------------- An HTML attachment was scrubbed... URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: H5 cluster.tiff Type: image/tiff Size: 570070 bytes Desc: not available URL: From ozcanezgi88 at gmail.com Mon Nov 16 01:25:18 2020 From: ozcanezgi88 at gmail.com (=?UTF-8?Q?Ezgi_=C3=96zcan?=) Date: Sun, 15 Nov 2020 19:25:18 -0500 Subject: [genoPlotR-help] Fwd: adding contigs to the gene comparison In-Reply-To: References: Message-ID: Hi, I am using genoplotR to plot arrow comparisons for four genomes. One is type strain complete sequence and the other 3 are draft genomes, therefore, they are in contigs. The genes of interest reside in different contigs in my draft genomes. Here is an example for one of the genomes below. As you can see some genes are overlapping positions if we dont consider the contigs. Can you help me how to add contigs into my figures? I have also attached a comparison map to the type strain. Thank you for your help, UCD301 start end position contig 977 1999 + 37 3 908 + 37 5743 6337 + 32 4614 5693 + 32 2332 4587 + 32 1162 2112 + 32 191 1162 + 32 441 1757 + 311 Ezgi Özcan -------------- next part -------------- An HTML attachment was scrubbed... URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: H5 cluster.tiff Type: image/tiff Size: 570070 bytes Desc: not available URL: