From lionel.guy at imbim.uu.se  Wed Mar  2 09:48:56 2016
From: lionel.guy at imbim.uu.se (Lionel Guy)
Date: Wed, 2 Mar 2016 08:48:56 +0000
Subject: [genoPlotR-help] Help with genoPlotR
In-Reply-To: <1055056363.1571260.1456880201287.JavaMail.yahoo@mail.yahoo.com>
References: <1055056363.1571260.1456880201287.JavaMail.yahoo.ref@mail.yahoo.com>
 <1055056363.1571260.1456880201287.JavaMail.yahoo@mail.yahoo.com>
Message-ID: <0973C492-945D-4BD0-A823-B8E84359E890@imbim.uu.se>

Dear Tuan,

Yes, there are ways to re-make this plot in genoplotr. To explore the possibilities, look at the examples in http://genoplotr.r-forge.r-project.org/screenshots.php
You can also explore the examples directly in R:
> library(genoPlotR)
> help(plot_gene_map)
> example(plot_gene_map)

To plot your own gene symbols/arrows, look into
> help(gene_type)
> example(gene_type)

To add graphs to each segment, look at 
> help(seg_plot)
> example(seg_plot)

Best regards,

Lionel
> On 2 Mar 2016, at 1:56 , Nguyen Hai Tuan <nhaituan at yahoo.com> wrote:
> 
> Dear professor Lionel,
> 
> Is there any way in the genoPlotR package to view the gene in aligned view as in the picture attached?
> 
> I try hard but I don't figure out any function.
> 
> Thank you very much,
> 
> Tuan.
> 
> Nagasaki University
>  
> 
> --------------------------------------------------
> <PicTure.JPG>

--
Lionel Guy
Department for Medical Biochemistry and Microbiology, Uppsala University, Uppsala, Sweden
phone: +46 18 471 4366; mobile +46 73 976 0618; postal address: Box 582, SE-751 23 Uppsala; visiting address: BMC D7:304c, Husargatan 3, SE-752 37 Uppsala
lionel.guy at imbim.uu.se