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Dear Lennart and Xia,
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<div>since I’m in a similar situation as Xia (I wold have a package waiting for second review),</div>
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<div>I would propose to review Xia’s package while he could review mine if he has time. </div>
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<div>I think this would speed up things. Also I have data which would be very good to test as multi-trait.</div>
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<div>Anyways I would be happy to review it and test it.</div>
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<div>Best.</div>
<div><br>
</div>
<div>Nicola</div>
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<div>Il giorno 03/nov/2014, alle ore 10:07, L.C. Karssen <<a href="mailto:lennart@karssen.org">lennart@karssen.org</a>> ha scritto:</div>
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Dear Xia,<br>
<br>
On 30-10-14 23:12, Xia Shen wrote:<br>
<blockquote type="cite">Dear list,<br>
<br>
Thanks Lennart for a fairly good introduction of me! Following this, I<br>
would like to inform you that a new package, MultiABEL, has been<br>
committed to R-Forge and successfully built. This is the first (R-only)<br>
version, which performs multivariate GWA analysis, i.e. testing a group<br>
of (co)related phenotypes against each single variant. There are also a<br>
replication analysis module and a simple meta-analysis module included.<br>
The GWA module is compatible with both GenABEL (directly typed data) and<br>
DatABEL (imputed data) formats of genotypes.<br>
</blockquote>
<br>
Thank you for contributing this package. It looks like a good addition<br>
to the GenABEL suite.<br>
<br>
<blockquote type="cite"><br>
I would kindly ask whether any of you could do a technical review of<br>
this new package, to ensure the coding follows GenABEL standards. You<br>
are certainly also welcome to contribute to future development of this<br>
package.<br>
</blockquote>
<br>
We will be happy to do the review. Any volunteers can reply to the list<br>
or send me a private e-mail (although we prefer the 'open' route of<br>
using the mailing list).<br>
Some time ago we set up a list of suggested questions to aid package<br>
reviews at<br>
<a href="http://genabel.r-forge.r-project.org/packageReviewGuidelines.html">http://genabel.r-forge.r-project.org/packageReviewGuidelines.html</a><span class="Apple-converted-space"> </span>(of<br>
course, suggestions for additions, corrections, etc. are very welcome).<br>
<br>
<br>
Best regards,<br>
<br>
Lennart.<br>
<br>
<blockquote type="cite"><br>
Thanks in advance!<br>
<br>
Xia<br>
<br>
*Xia Shen, PhD*<br>
<a href="http://shen.se/">shen.se</a><span class="Apple-converted-space"> </span><<a href="http://shen.se/">http://shen.se/</a>><br>
<br>
Department of Medical Epidemiology & Biostatistics<br>
Karolinska Institutet<br>
Nobels väg 12A<br>
SE-171 77 Stockholm<br>
SWEDEN<br>
<br>
MRC Human Genetics Unit<br>
MRC Institute of Genetics & Molecular Medicine<br>
University of Edinburgh<br>
Western General Hospital<br>
Crewe Road<br>
EH4 2XU Edinburgh<br>
UK<br>
<br>
<blockquote type="cite"><br>
Date: Thu, 30 Oct 2014 13:34:25 +0100<br>
From: "L.C. Karssen" <<a href="mailto:lennart@karssen.org">lennart@karssen.org</a><span class="Apple-converted-space"> </span><<a href="mailto:lennart@karssen.org">mailto:lennart@karssen.org</a>>><br>
To: GenABEL Development list<br>
<<a href="mailto:genabel-devel@lists.r-forge.r-project.org">genabel-devel@lists.r-forge.r-project.org</a><br>
<<a href="mailto:genabel-devel@lists.r-forge.r-project.org">mailto:genabel-devel@lists.r-forge.r-project.org</a>>><br>
Subject: [GenABEL-dev] Introducing Xia Shen<br>
Message-ID: <<a href="mailto:54523051.4060502@karssen.org">54523051.4060502@karssen.org</a><br>
<<a href="mailto:54523051.4060502@karssen.org">mailto:54523051.4060502@karssen.org</a>>><br>
Content-Type: text/plain; charset="utf-8"<br>
<br>
Dear list,<br>
<br>
With this e-mail I'd like to introduce Xia Shen as a "new" member of our<br>
community. Some of you may know Xia from his contributions to the devel<br>
list or his work on GenABEL's polygenic_hglm.<br>
<br>
In the past, both Yurii and I have worked with Xia in the past and now<br>
Xia has asked whether he could join the GenABEL project as well. Xia has<br>
a background in statistical genetics and has already worked on several R<br>
packages, notably bigRR [1] and hglm [2], which are both in the Suggests<br>
list of the GenABEL package.<br>
<br>
Xia has been working on a new package he'd like to include in the<br>
GenABEL suite. I'm sure you will here more on that in the near future.<br>
In order to set up the package Xia has been given commit access to the<br>
SVN repo.<br>
<br>
Xia, I wish you a warm welcome and look forward to your contributions.<br>
<br>
Best,<br>
<br>
Lennart.<br>
<br>
<br>
[1] <a href="http://cran.r-project.org/web/packages/bigRR/index.html">http://cran.r-project.org/web/packages/bigRR/index.html</a><br>
[2]<span class="Apple-converted-space"> </span><a href="http://cran.r-project.org/web/packages/hglm/index.html">http://cran.r-project.org/web/packages/hglm/index.html</a><br>
--<span class="Apple-converted-space"> </span><br>
*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*<br>
L.C. Karssen<br>
Utrecht<br>
The Netherlands<br>
<br>
<a href="mailto:lennart@karssen.org">lennart@karssen.org</a><span class="Apple-converted-space"> </span><<a href="mailto:lennart@karssen.org">mailto:lennart@karssen.org</a>><br>
<a href="http://blog.karssen.org/">http://blog.karssen.org</a><br>
GPG key ID: A88F554A<br>
-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-<br>
</blockquote>
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</blockquote>
<br>
--<span class="Apple-converted-space"> </span><br>
*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*<br>
L.C. Karssen<br>
Utrecht<br>
The Netherlands<br>
<br>
<a href="mailto:lennart@karssen.org">lennart@karssen.org</a><br>
http://blog.karssen.org<br>
GPG key ID: A88F554A<br>
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