<br><br><div class="gmail_quote">On Tue, Jul 2, 2013 at 6:05 PM, L.C. Karssen <span dir="ltr"><<a href="mailto:lennart@karssen.org" target="_blank">lennart@karssen.org</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
Dear all,<br>
<div class="im"><br>
On 02-07-13 12:38, Yurii Aulchenko wrote:<br>
> ah, ok, I thought it was a copy, sorry for confusion<br>
><br>
> in principle we should think of tighter integration<br>
> OmicA-filevector/DatA, but this is not something for 5 minutes :)<br>
><br>
<br>
</div>Definitely not 5 minutes :-). My idea has always been be to turn the<br>
contents of the filevector directory in SVN into a (shared) library.<br>
This would allow us to package it separately without the need to<br>
copy/symlink the directory for each of the other packages. It would more<br>
easily allow versioning of the filevector files.<br>
If this all works, we can compile the other ABELs with a -lfilevector<br>
option. For the user, however, it would mean that the need to install<br>
two packages (e.g. for ProbABEL they would need to install the<br>
filevector library and ProbABEL itself) unless we distribute the various<br>
"filevector.so" files with the other packages.<br>
<br>
Of course, any ideas/opinions on this are welcome!<br>
<br></blockquote><div><br><br>I like the 'library' idea very much; in a way I think this should be as cool as what Lennart did to ProbABEL (autotools) :) <br><br>Not
sure that this will be very easy to do, especially cross different
platforms though. Also not sure how that will work with
CRAN-submissions.I think we will obtain useful experience while solving
the MixABEL (which does use GSL, and is not on CRAN). <br>
<br>YA <br><br></div><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
Lennart.<br>
<div class="im"><br>
> YA<br>
><br>
> On Tue, Jul 2, 2013 at 11:45 AM, Diego Fabregat Traver<br>
</div>> <<a href="mailto:fabregat@aices.rwth-aachen.de">fabregat@aices.rwth-aachen.de</a> <mailto:<a href="mailto:fabregat@aices.rwth-aachen.de">fabregat@aices.rwth-aachen.de</a>>><br>
<div class="im">> wrote:<br>
><br>
><br>
><br>
> On 02/07/13, Yurii Aulchenko <<a href="mailto:yurii.aulchenko@gmail.com">yurii.aulchenko@gmail.com</a><br>
</div><div class="im">> <mailto:<a href="mailto:yurii.aulchenko@gmail.com">yurii.aulchenko@gmail.com</a>>> wrote:<br>
><br>
> > Diego,<br>
> ><br>
> > I understand this file is the part of filevector. In that may it be<br>
> > better to have a symlink instead of hard copy? - this is what we do<br>
> > for say DatA, MixA and GenA.<br>
><br>
> I am not sure what you mean by "part of". If you mean a copy of a<br>
> file from<br>
> filevector, it is not. If you mean related, yes it is.<br>
><br>
> databel.{c,h} is OmicABEL is just a small module with a couple<br>
> utilities:<br>
><br>
> <a href="https://r-forge.r-project.org/scm/viewvc.php/pkg/OmicABEL/src/databel.h?view=markup&root=genabel" target="_blank">https://r-forge.r-project.org/scm/viewvc.php/pkg/OmicABEL/src/databel.h?view=markup&root=genabel</a><br>
> <a href="https://r-forge.r-project.org/scm/viewvc.php/pkg/OmicABEL/src/databel.c?view=markup&root=genabel" target="_blank">https://r-forge.r-project.org/scm/viewvc.php/pkg/OmicABEL/src/databel.c?view=markup&root=genabel</a><br>
><br>
> Diego<br>
><br>
> > Y<br>
> ><br>
> > ----------------------<br>
> > Yurii Aulchenko<br>
> > (sent from mobile device)<br>
> ><br>
> > On 2 Jul 2013, at 10:53, "<a href="mailto:noreply@r-forge.r-project.org">noreply@r-forge.r-project.org</a><br>
</div>> <mailto:<a href="mailto:noreply@r-forge.r-project.org">noreply@r-forge.r-project.org</a>>"<br>
> > <<a href="mailto:noreply@r-forge.r-project.org">noreply@r-forge.r-project.org</a><br>
<div><div class="h5">> <mailto:<a href="mailto:noreply@r-forge.r-project.org">noreply@r-forge.r-project.org</a>>> wrote:<br>
> ><br>
> > > Author: dfabregat<br>
> > > Date: 2013-07-02 10:52:58 +0200 (Tue, 02 Jul 2013)<br>
> > > New Revision: 1267<br>
> > ><br>
> > > Modified:<br>
> > > pkg/OmicABEL/src/databel.h<br>
> > > Log:<br>
> > > Defining DatABEL datatypes and their associated value<br>
> > > for *.fvi headers.<br>
> > ><br>
> > ><br>
> > > Modified: pkg/OmicABEL/src/databel.h<br>
> > > ===================================================================<br>
> > > --- pkg/OmicABEL/src/databel.h 2013-07-01 12:55:37 UTC (rev 1266)<br>
> > > +++ pkg/OmicABEL/src/databel.h 2013-07-02 08:52:58 UTC (rev 1267)<br>
> > > @@ -25,14 +25,14 @@<br>
> > > #ifndef DATABEL_H<br>
> > > #define DATABEL_H<br>
> > ><br>
> > > -#define UNSIGNED_SHORT_INT_TYPE<br>
> > > -#define SHORT_INT_TYPE<br>
> > > -#define UNSIGNED_INT_TYPE<br>
> > > -#define INT_TYPE<br>
> > > -#define FLOAT_TYPE<br>
> > > -#define DOUBLE_TYPE<br>
> > > -#define SIGNED_CHAR_TYPE<br>
> > > -#define UNSIGNED_CHAR_TYPE<br>
> > > +enum datatype{ UNSIGNED_SHORT_INT_TYPE = 1,<br>
> > > + SHORT_INT_TYPE,<br>
> > > + UNSIGNED_INT_TYPE,<br>
> > > + INT_TYPE,<br>
> > > + FLOAT_TYPE,<br>
> > > + DOUBLE_TYPE,<br>
> > > + SIGNED_CHAR_TYPE,<br>
> > > + UNSIGNED_CHAR_TYPE };<br>
> > ><br>
> > > #define NAMELENGTH 32<br>
> > > #define RESERVEDSPACE 5<br>
> > ><br>
> > > _______________________________________________<br>
> > > Genabel-commits mailing list<br>
> > > <a href="mailto:Genabel-commits@lists.r-forge.r-project.org">Genabel-commits@lists.r-forge.r-project.org</a><br>
</div></div>> <mailto:<a href="mailto:Genabel-commits@lists.r-forge.r-project.org">Genabel-commits@lists.r-forge.r-project.org</a>><br>
<div class="im">> > ><br>
> <a href="https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/genabel-commits" target="_blank">https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/genabel-commits</a><br>
> > _______________________________________________<br>
> > genabel-devel mailing list<br>
> > <a href="mailto:genabel-devel@lists.r-forge.r-project.org">genabel-devel@lists.r-forge.r-project.org</a><br>
</div>> <mailto:<a href="mailto:genabel-devel@lists.r-forge.r-project.org">genabel-devel@lists.r-forge.r-project.org</a>><br>
<div class="im">> ><br>
> <a href="https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/genabel-devel" target="_blank">https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/genabel-devel</a><br>
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</div>> <mailto:<a href="mailto:genabel-devel@lists.r-forge.r-project.org">genabel-devel@lists.r-forge.r-project.org</a>><br>
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><br>
><br>
><br>
><br>
> --<br>
> -----------------------------------------------------<br>
> Yurii S. Aulchenko<br>
><br>
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<div class="im">><br>
><br>
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<br>
--<br>
</div>-----------------------------------------------------------------<br>
L.C. Karssen<br>
Utrecht<br>
The Netherlands<br>
<br>
<a href="mailto:lennart@karssen.org">lennart@karssen.org</a><br>
<a href="http://blog.karssen.org" target="_blank">http://blog.karssen.org</a><br>
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<br>-- <br>-----------------------------------------------------<br>Yurii S. Aulchenko<br><div><br></div><div>[ <a href="http://nl.linkedin.com/in/yuriiaulchenko" target="_blank">LinkedIn</a> ] [ <a href="http://twitter.com/YuriiAulchenko" target="_blank">Twitter</a> ] [ <a href="http://yurii-aulchenko.blogspot.nl/" target="_blank">Blog</a> ]</div>