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</o:shapelayout></xml><![endif]--></head><body lang=EN-GB link=blue vlink=purple><div class=WordSection1><p class=MsoNormal>Dear All,<o:p></o:p></p><p class=MsoNormal>Please find below the error message received when we tried to install VariAble:<o:p></o:p></p><p class=MsoNormal><o:p> </o:p></p><p class=MsoNormal>[root@ris-vlx01 pkg]# /usr/local/shared_bin/R/R-2.13.0/ES5-64/bin/R CMD INSTALL VariABEL<o:p></o:p></p><p class=MsoNormal>* installing to library ‘/usr/local/shared_bin/R/R-2.13.0/ES5-64/lib64/R/library’<o:p></o:p></p><p class=MsoNormal>* installing *source* package ‘VariABEL’ ...<o:p></o:p></p><p class=MsoNormal>** libs<o:p></o:p></p><p class=MsoNormal>g++ -I/usr/local/shared_bin/R/R-2.13.0/ES5-64/lib64/R/include -I/usr/local/include -DCOMPILE_WITH_R -fpic -g -O2 -c AbstractMatrix.cpp -o AbstractMatrix.o<o:p></o:p></p><p class=MsoNormal>g++ -I/usr/local/shared_bin/R/R-2.13.0/ES5-64/lib64/R/include -I/usr/local/include -DCOMPILE_WITH_R -fpic -g -O2 -c AbstractMatrix_R.cpp -o AbstractMatrix_R.o<o:p></o:p></p><p class=MsoNormal>CastUtils.h: In function ‘void performCast(void*, DT&, int, bool&) [with DT = double]’:<o:p></o:p></p><p class=MsoNormal>AbstractMatrix.h:27: instantiated from ‘void AbstractMatrix::writeVariableAs(long unsigned int, DT*) [with DT = double]’<o:p></o:p></p><p class=MsoNormal>AbstractMatrix_R.cpp:388: instantiated from here<o:p></o:p></p><p class=MsoNormal>CastUtils.h:92: warning: converting to ‘short unsigned int’ from ‘double’<o:p></o:p></p><p class=MsoNormal>CastUtils.h:95: warning: converting to ‘short int’ from ‘double’<o:p></o:p></p><p class=MsoNormal>CastUtils.h:98: warning: converting to ‘unsigned int’ from ‘double’<o:p></o:p></p><p class=MsoNormal>CastUtils.h:101: warning: converting to ‘int’ from ‘double’<o:p></o:p></p><p class=MsoNormal>CastUtils.h:110: warning: converting to ‘char’ from ‘double’<o:p></o:p></p><p class=MsoNormal>CastUtils.h:113: warning: converting to ‘unsigned char’ from ‘double’<o:p></o:p></p><p class=MsoNormal>g++ -I/usr/local/shared_bin/R/R-2.13.0/ES5-64/lib64/R/include -I/usr/local/include -DCOMPILE_WITH_R -fpic -g -O2 -c CastUtils.cpp -o CastUtils.o<o:p></o:p></p><p class=MsoNormal>g++ -I/usr/local/shared_bin/R/R-2.13.0/ES5-64/lib64/R/include -I/usr/local/include -DCOMPILE_WITH_R -fpic -g -O2 -c FileVector.cpp -o FileVector.o<o:p></o:p></p><p class=MsoNormal>g++ -I/usr/local/shared_bin/R/R-2.13.0/ES5-64/lib64/R/include -I/usr/local/include -DCOMPILE_WITH_R -fpic -g -O2 -c FilteredMatrix.cpp -o FilteredMatrix.o<o:p></o:p></p><p class=MsoNormal>g++ -I/usr/local/shared_bin/R/R-2.13.0/ES5-64/lib64/R/include -I/usr/local/include -DCOMPILE_WITH_R -fpic -g -O2 -c FilteredMatrix_R.cpp -o FilteredMatrix_R.o<o:p></o:p></p><p class=MsoNormal>g++ -I/usr/local/shared_bin/R/R-2.13.0/ES5-64/lib64/R/include -I/usr/local/include -DCOMPILE_WITH_R -fpic -g -O2 -c Logger.cpp -o Logger.o<o:p></o:p></p><p class=MsoNormal>g++ -I/usr/local/shared_bin/R/R-2.13.0/ES5-64/lib64/R/include -I/usr/local/include -DCOMPILE_WITH_R -fpic -g -O2 -c RealHandlerWrapper.cpp -o RealHandlerWrapper.o<o:p></o:p></p><p class=MsoNormal>g++ -I/usr/local/shared_bin/R/R-2.13.0/ES5-64/lib64/R/include -I/usr/local/include -DCOMPILE_WITH_R -fpic -g -O2 -c ReusableFileHandle.cpp -o ReusableFileHandle.o<o:p></o:p></p><p class=MsoNormal>g++ -I/usr/local/shared_bin/R/R-2.13.0/ES5-64/lib64/R/include -I/usr/local/include -DCOMPILE_WITH_R -fpic -g -O2 -c Transposer.cpp -o Transposer.o<o:p></o:p></p><p class=MsoNormal>g++ -I/usr/local/shared_bin/R/R-2.13.0/ES5-64/lib64/R/include -I/usr/local/include -DCOMPILE_WITH_R -fpic -g -O2 -c convert_util.cpp -o convert_util.o<o:p></o:p></p><p class=MsoNormal>g++ -I/usr/local/shared_bin/R/R-2.13.0/ES5-64/lib64/R/include -I/usr/local/include -DCOMPILE_WITH_R -fpic -g -O2 -c dautil.cpp -o dautil.o<o:p></o:p></p><p class=MsoNormal>g++ -I/usr/local/shared_bin/R/R-2.13.0/ES5-64/lib64/R/include -I/usr/local/include -DCOMPILE_WITH_R -fpic -g -O2 -c frutil.cpp -o frutil.o<o:p></o:p></p><p class=MsoNormal>g++ -I/usr/local/shared_bin/R/R-2.13.0/ES5-64/lib64/R/include -I/usr/local/include -DCOMPILE_WITH_R -fpic -g -O2 -c gtps_container.cpp -o gtps_container.o<o:p></o:p></p><p class=MsoNormal>g++ -I/usr/local/shared_bin/R/R-2.13.0/ES5-64/lib64/R/include -I/usr/local/include -DCOMPILE_WITH_R -fpic -g -O2 -c inverse_variance_metaanalysis.cpp -o inverse_variance_metaanalysis.o<o:p></o:p></p><p class=MsoNormal>g++ -I/usr/local/shared_bin/R/R-2.13.0/ES5-64/lib64/R/include -I/usr/local/include -DCOMPILE_WITH_R -fpic -g -O2 -c iterator.cpp -o iterator.o<o:p></o:p></p><p class=MsoNormal>iterator.cpp: In function ‘SEXPREC* iterator(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, ...)’:<o:p></o:p></p><p class=MsoNormal>iterator.cpp:222: error: ‘va_start’ was not declared in this scope<o:p></o:p></p><p class=MsoNormal>iterator.cpp:224: error: expected primary-expression before ‘)’ token<o:p></o:p></p><p class=MsoNormal>iterator.cpp:224: error: ‘va_arg’ was not declared in this scope<o:p></o:p></p><p class=MsoNormal>iterator.cpp:226: error: ‘va_end’ was not declared in this scope<o:p></o:p></p><p class=MsoNormal>CastUtils.h: In function ‘void performCast(void*, DT&, int, bool&) [with DT = double]’:<o:p></o:p></p><p class=MsoNormal>AbstractMatrix.h:27: instantiated from ‘void AbstractMatrix::writeVariableAs(long unsigned int, DT*) [with DT = double]’<o:p></o:p></p><p class=MsoNormal>iterator.cpp:362: instantiated from here<o:p></o:p></p><p class=MsoNormal>CastUtils.h:92: warning: converting to ‘short unsigned int’ from ‘double’<o:p></o:p></p><p class=MsoNormal>CastUtils.h:95: warning: converting to ‘short int’ from ‘double’<o:p></o:p></p><p class=MsoNormal>CastUtils.h:98: warning: converting to ‘unsigned int’ from ‘double’<o:p></o:p></p><p class=MsoNormal>CastUtils.h:101: warning: converting to ‘int’ from ‘double’<o:p></o:p></p><p class=MsoNormal>CastUtils.h:110: warning: converting to ‘char’ from ‘double’<o:p></o:p></p><p class=MsoNormal>CastUtils.h:113: warning: converting to ‘unsigned char’ from ‘double’<o:p></o:p></p><p class=MsoNormal>make: *** [iterator.o] Error 1<o:p></o:p></p><p class=MsoNormal>ERROR: compilation failed for package ‘VariABEL’<o:p></o:p></p><p class=MsoNormal>* removing ‘/usr/local/shared_bin/R/R-2.13.0/ES5-64/lib64/R/library/VariABEL’<o:p></o:p></p><p class=MsoNormal><o:p> </o:p></p><p class=MsoNormal><o:p> </o:p></p><p class=MsoNormal>We do have gsl-1.13 installed and its lib directory is in LD_LIBRARY_PATH<o:p></o:p></p><p class=MsoNormal><o:p> </o:p></p><p class=MsoNormal><o:p> </o:p></p><p class=MsoNormal>Any help will be appreciated.<o:p></o:p></p><p class=MsoNormal><o:p> </o:p></p><p class=MsoNormal>Thanks,<o:p></o:p></p><p class=MsoNormal><o:p> </o:p></p><p class=MsoNormal>Ozzie<o:p></o:p></p><p class=MsoNormal><o:p> </o:p></p><p class=MsoNormal><o:p> </o:p></p><p class=MsoNormal><o:p> </o:p></p><p class=MsoNormal 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