[Forensim-help] r112 - pkg/man

[noreply at r-forge.r-project.org]

Author: hindahaned
Date: 2009-07-22 09:05:34 +0200 (Wed, 22 Jul 2009)
New Revision: 112

Modified:
   pkg/man/Pevid2.Rd
   pkg/man/forensim.package.Rd
   pkg/man/mastermix.Rd
   pkg/man/simufreqD.Rd
   pkg/man/simupopD.Rd
Log:


Modified: pkg/man/Pevid2.Rd
===================================================================
--- pkg/man/Pevid2.Rd	2009-07-22 07:00:58 UTC (rev 111)
+++ pkg/man/Pevid2.Rd	2009-07-22 07:05:34 UTC (rev 112)
@@ -50,7 +50,7 @@
 }
 
 
-\seealso{  \code{\link{LR}}}%, \code{\link{Pmatch}} }
+\seealso{  \code{\link{LR}}}, \code{\link{Pmatch}} }
 \examples{
 # A rape case in Hong Kong (Hu and Fung, Int J Legal Med 2003)
 # The stain shows alleles 14, 15, 17 and 18 at locus D3S1358.

Modified: pkg/man/forensim.package.Rd
===================================================================
--- pkg/man/forensim.package.Rd	2009-07-22 07:00:58 UTC (rev 111)
+++ pkg/man/forensim.package.Rd	2009-07-22 07:05:34 UTC (rev 112)
@@ -13,9 +13,6 @@
 \linkS4class{simumix} objects are used to store DNA mixtures.\cr
 For more information about these classes type 'class ?tabfreq', 'class ?simugeno' and 'class ?simumix'.\cr
 
-%Statistical tools for interpretation of the functions
-%-\code{\link{mincontri}}: the maximum allele count method
-%-\code{\link{likestim}}: the maximum of likelihood method
 
  }
 

Modified: pkg/man/mastermix.Rd
===================================================================
--- pkg/man/mastermix.Rd	2009-07-22 07:00:58 UTC (rev 111)
+++ pkg/man/mastermix.Rd	2009-07-22 07:05:34 UTC (rev 112)
@@ -34,7 +34,7 @@
 -The three allele model: at a given locus, three alleles are observed in the DNA stain.\cr
 -The four allele model: at a given locus, four alleles are observed in the DNA stain.\cr
 
-%Clicking on each button launches a simulation  dialog window for the corresponding model.
+
 A left-click on each button launches a simulation dialog window for the corresponding
 model, while a right-click opens the corresponding help page. 
 }

Modified: pkg/man/simufreqD.Rd
===================================================================
--- pkg/man/simufreqD.Rd	2009-07-22 07:00:58 UTC (rev 111)
+++ pkg/man/simufreqD.Rd	2009-07-22 07:05:34 UTC (rev 112)
@@ -34,8 +34,7 @@
 variables
 p=(p1, ..., pn), following a Dirichlet distribution with parameters:\cr
 alpha = (alpha1, ..., alphan) where p1+...+pn=1  and  alpha1,..., alphan  > 0. 
-%Giving the case that is being considered, the alpha parameters can either be all equal,
-%or differ.
+
 }
 
 \value{

Modified: pkg/man/simupopD.Rd
===================================================================
--- pkg/man/simupopD.Rd	2009-07-22 07:00:58 UTC (rev 111)
+++ pkg/man/simupopD.Rd	2009-07-22 07:05:34 UTC (rev 112)
@@ -46,10 +46,7 @@
  (p1(1-a1)/alpha1[1], ..., pn(1-alpha1[1])/alpha1[1]),  where p1+...+pn=1  and alpha1[1] > 0.\cr
 alpha1[1] is the variance parameter for population 1 and is equivalent to Wright's Fst. The closest this parameter is to one,
 the more the population allele frequencies are different from the values  of the reference population. 
-%Note that the term subpopulation
-%is not used here because the only effect of subdivision taken into account is the deviance of the subpopulation allele frequencies
-%from the average values of the reference population. The  genotypes are simulated independently within a subpopulation, this 
-%might not be the case in subdivided populations.
+
 }
 \value{
   The result is stored in a list with two elements :