<!DOCTYPE html PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN"><html><head><meta content="text/html;charset=UTF-8" http-equiv="Content-Type"></head><body ><div style='font-size:10pt;font-family:Verdana,Arial,Helvetica,sans-serif;'><div>harvest.spwn and m.spwn are set to NA<br></div><div><br></div><div>m.spwn(stock) <- 0.5<br></div><div>harvest.spwn(stock) <- 0.5<br></div><div><br></div><div>ssb(stock)<br></div><div><br></div><div>Change 0.5 with the right value, proportion of the year (m.spwn) and fishing season (harvest.swpn) when spawning takes place.<br></div><div><br></div><div>There is a new method for FLStock, verify(), that will output a table with the results of some basic checks<br></div><div><br></div><div>> verify(stock)<br></div><div> name items passes fails NAs valid<br></div><div>1 anyna 17 12 5 0 FALSE<br></div><div>2 catch.wt 741 NA NA 4 NA<br></div><div>3 landings.wt 741 728 13 0 FALSE<br></div><div>4 discards.wt 741 0 741 0 FALSE<br></div><div>5 stock.wt 741 728 13 0 FALSE<br></div><div>6 mat 741 741 0 0 TRUE<br></div><div>7 harvest.spwn 741 NA NA 741 NA<br></div><div>8 m.spwn 741 NA NA 741 NA<br></div><div>9 harvest 741 741 0 0 TRUE<br></div><div>10 cohorts 352 351 1 0 FALSE<br></div><div> rule<br></div><div>1 !anyna<br></div><div>2 catch.wt > 0<br></div><div>3 landings.wt > 0<br></div><div>4 discards.wt > 0<br></div><div>5 stock.wt > 0<br></div><div>6 mat <= 1 & mat >= 0<br></div><div>7 harvest.spwn <= 1 & harvest.spwn >= 0<br></div><div>8 m.spwn <= 1 & m.spwn >= 0<br></div><div>9 harvest >= 0<br></div><div>10 ccohorts(stock.n)<br></div><div><br></div><div>This is telling you that, for example,<br></div><div><br></div><div>- 1. 5 slots have NAs<br></div><div>- 2. 4 elements in cactch.wt are NA<br></div><div><br></div><div>> sum(is.na(catch.wt(stock)))<br></div><div>[1] 4<br></div><div><br></div><div>Some of those NAs might be correct, but it warns you about them.<br></div><div><br></div><div>You should also look at the units of each slot<br></div><div><br></div><div>summary(stock)<br></div><div><br></div><div>and change to valid values, so you get the correct units in ssb().<br></div><div><br></div><div>- Change "tonnes" to "t"<br></div><div>- Change "thousands" to "1000" or "1e3"<br></div><div>- Set mat, harvest.spwn and m.spwn to "" (empty, as they are proprotions)<br></div><div><br></div><div><br></div><div>Cheers,<br></div><div><br></div><div><br></div><div>Iago<br></div><div><br></div><div class="zmail_extra"><div id="Zm-_Id_-Sgn1"><div><br></div><div>---- On Thu, 26 Apr 2018 09:48:07 +0200 <b>Luis Ridao Cruz <Luisr@hav.fo></b> wrote ----<br></div></div><div><br></div><blockquote style="border-left: 1px solid #cccccc; padding-left: 6px; margin:0 0 0 5px"><div><div>see attached <br></div><div> <br></div><div>Luis <br></div><div> <br></div><div>>>> <<a target="_blank" href="mailto:Iago.MOSQUEIRA@ec.europa.eu">Iago.MOSQUEIRA@ec.europa.eu</a>> 19/04/2018 16:30 >>> <br></div><div>Can you send me the FLStock by email, please? <br></div><div> <br></div><div> <br></div><div>Iago <br></div><div> <br></div><div> <br></div><div>-- <br></div><div>Dr Iago Mosqueira <br></div><div> <br></div><div>European Commission <br></div><div>DG Joint Research Centre <br></div><div>Directorate D - Sustainable Resources <br></div><div>Unit D.02 Water and Marine Resources <br></div><div> <br></div><div>TP 051, Via Enrico Fermi 2749 <br></div><div>I-21027 Ispra (VA), Italy <br></div><div> <br></div><div>Phone : +39 0332 785413 <br></div><div> <br></div><div><a target="_blank" href="mailto:iago.mosqueira@ec.europa.eu">iago.mosqueira@ec.europa.eu</a> <br></div><div>________________________________ <br></div><div>From: <a target="_blank" href="mailto:flr-list-bounces@lists.r-forge.r-project.org">flr-list-bounces@lists.r-forge.r-project.org</a> <br></div><div>[<a target="_blank" href="mailto:flr-list-bounces@lists.r-forge.r-project.org">flr-list-bounces@lists.r-forge.r-project.org</a>] on behalf of Luis <br></div><div>Ridao [<a target="_blank" href="mailto:luridao@gmail.com">luridao@gmail.com</a>] <br></div><div>Sent: 19 April 2018 17:29 <br></div><div>To: <a target="_blank" href="mailto:flr-list@flr-project.org">flr-list@flr-project.org</a> <br></div><div>Subject: Re: [FLR-list] ssb(stock) <br></div><div> <br></div><div> <br></div><div>both <br></div><div> <br></div><div> <br></div><div> <br></div><div> <br></div><div>*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*- <br></div><div>* Luis Ridao Cruz <br></div><div>* Faroe Marine Research Institute <br></div><div>* Nóatún 1, P.O. Box 3051 <br></div><div>* FO-110 Tórshavn <br></div><div>* Faroe Islands <br></div><div>* Tel : (+298) 353900 <br></div><div>* Fax: : (+298) 353901 <br></div><div>* e-mail: <a target="_blank" href="mailto:luisr@hav.fo">luisr@hav.fo</a><mailto:<a target="_blank" href="mailto:luisr@hav.fo">luisr@hav.fo</a>> <br></div><div>* <a target="_blank" href="mailto:luridao@gmail.com">luridao@gmail.com</a><mailto:<a target="_blank" href="mailto:luridao@gmail.com">luridao@gmail.com</a>> <br></div><div>*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*- <br></div><div> <br></div><div> <br></div><div>On Thu, Apr 19, 2018 at 4:22 PM, <br></div><div><<a target="_blank" href="mailto:Iago.MOSQUEIRA@ec.europa.eu">Iago.MOSQUEIRA@ec.europa.eu</a><mailto:<a target="_blank" href="mailto:Iago.MOSQUEIRA@ec.europa.eu">Iago.MOSQUEIRA@ec.europa.eu</a>>> <br></div><div>wrote: <br></div><div>NAs in the values or NA the units? <br></div><div> <br></div><div> <br></div><div>Iago <br></div><div> <br></div><div> <br></div><div> <br></div><div> <br></div><div> <br></div><div>-- <br></div><div>Dr Iago Mosqueira <br></div><div> <br></div><div>European Commission <br></div><div>DG Joint Research Centre <br></div><div>Directorate D - Sustainable Resources <br></div><div>Unit D.02 Water and Marine Resources <br></div><div> <br></div><div>TP 051, Via Enrico Fermi 2749 <br></div><div>I-21027 Ispra (VA), Italy <br></div><div> <br></div><div>Phone : +39 0332 785413 <br></div><div> <br></div><div><a target="_blank" href="mailto:iago.mosqueira@ec.europa.eu">iago.mosqueira@ec.europa.eu</a><mailto:<a target="_blank" href="mailto:iago.mosqueira@ec.europa.eu">iago.mosqueira@ec.europa.eu</a>> <br></div><div>________________________________ <br></div><div>From: <br></div><div><a target="_blank" href="mailto:flr-list-bounces@lists.r-forge.r-project.org">flr-list-bounces@lists.r-forge.r-project.org</a><mailto:<a target="_blank" href="mailto:flr-list-bounces@lists.r-forge.r-project.org">flr-list-bounces@lists.r-forge.r-project.org</a>> <br></div><div>[<a target="_blank" href="mailto:flr-list-bounces@lists.r-forge.r-project.org">flr-list-bounces@lists.r-forge.r-project.org</a><mailto:<a target="_blank" href="mailto:flr-list-bounces@lists.r-forge.r-project.org">flr-list-bounces@lists.r-forge.r-project.org</a>>] <br></div><div>on behalf of Luis Ridao [<a target="_blank" href="mailto:luridao@gmail.com">luridao@gmail.com</a><mailto:<a target="_blank" href="mailto:luridao@gmail.com">luridao@gmail.com</a>>] <br></div><div>Sent: 19 April 2018 17:10 <br></div><div>To: <a target="_blank" href="mailto:flr-list@flr-project.org">flr-list@flr-project.org</a><mailto:<a target="_blank" href="mailto:flr-list@flr-project.org">flr-list@flr-project.org</a>> <br></div><div>Subject: [FLR-list] ssb(stock) <br></div><div> <br></div><div> <br></div><div>hi all, <br></div><div> <br></div><div>for one reason or another the ssb function on my stock returns NAs <br></div><div> <br></div><div>these are the units of my stock: <br></div><div> <br></div><div> <br></div><div>> units(stock) <br></div><div>$catch <br></div><div>[1] "tonnes" <br></div><div> <br></div><div>$catch.n <br></div><div>[1] "thousands" <br></div><div> <br></div><div>$catch.wt <br></div><div>[1] "kg" <br></div><div> <br></div><div>$discards <br></div><div>[1] "tonnes" <br></div><div> <br></div><div>$discards.n <br></div><div>[1] "thousands" <br></div><div> <br></div><div>$discards.wt <br></div><div>[1] "kg" <br></div><div> <br></div><div>$landings <br></div><div>[1] "tonnes" <br></div><div> <br></div><div>$landings.n <br></div><div>[1] "thousands" <br></div><div> <br></div><div>$landings.wt <br></div><div>[1] "kg" <br></div><div> <br></div><div>$stock <br></div><div>[1] "tonnes" <br></div><div> <br></div><div>$stock.n <br></div><div>[1] "thousands" <br></div><div> <br></div><div>$stock.wt <br></div><div>[1] "kg" <br></div><div> <br></div><div>$m <br></div><div>[1] "m" <br></div><div> <br></div><div>$mat <br></div><div>[1] "NA" <br></div><div> <br></div><div>$harvest <br></div><div>[1] "f" <br></div><div> <br></div><div>$harvest.spwn <br></div><div>[1] "NA" <br></div><div> <br></div><div>$m.spwn <br></div><div>[1] "NA" <br></div><div> <br></div><div>thanks in advance, <br></div><div>Luis <br></div><div> <br></div><div> <br></div><div> <br></div><div> <br></div><div>_______________________________________________ <br></div><div>flr-list mailing list <br></div><div><a target="_blank" href="mailto:flr-list@flr-project.org">flr-list@flr-project.org</a><mailto:<a target="_blank" href="mailto:flr-list@flr-project.org">flr-list@flr-project.org</a>> <br></div><div><a target="_blank" href="https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/flr-list">https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/flr-list</a> <br></div><div> <br></div><div> <br></div><div>_______________________________________________ <br></div><div>flr-list mailing list <br></div><div><a target="_blank" href="mailto:flr-list@flr-project.org">flr-list@flr-project.org</a> <br></div><div><a target="_blank" href="https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/flr-list">https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/flr-list</a> <br></div></div></blockquote></div><div><br></div></div><br></body></html>