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<p>If you are running XSA this may be useful</p>
<p><br>
</p>
<p><a class="moz-txt-link-freetext" href="http://iccat.int/Documents/CVSP/CV071_2015/n_5/CV071052083.pdf">http://iccat.int/Documents/CVSP/CV071_2015/n_5/CV071052083.pdf</a></p>
<p><br>
</p>
<p>I could also probably find the code that ran all the figures</p>
<p><br>
</p>
<p>Laurie<br>
</p>
<br>
<div class="moz-cite-prefix">On 21/02/18 09:13, Alessandro Orio
wrote:<br>
</div>
<blockquote type="cite"
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<p class="MsoNormal"><span
style="font-size:11.0pt;font-family:"Arial",sans-serif;color:#44546A;mso-fareast-language:EN-US"
lang="EN-GB">Thanks now it is working!<o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size:11.0pt;font-family:"Arial",sans-serif;color:#44546A;mso-fareast-language:EN-US"
lang="EN-GB">Cheers,<o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size:11.0pt;font-family:"Arial",sans-serif;color:#44546A;mso-fareast-language:EN-US"
lang="EN-GB"><o:p> </o:p></span></p>
<p class="MsoNormal"><span
style="font-size:11.0pt;font-family:"Arial",sans-serif;color:#44546A;mso-fareast-language:EN-US"
lang="EN-GB">Ale<o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size:11.0pt;font-family:"Arial",sans-serif;color:#44546A;mso-fareast-language:EN-US"
lang="EN-GB"><o:p> </o:p></span></p>
<div>
<div style="border:none;border-top:solid #E1E1E1
1.0pt;padding:3.0pt 0cm 0cm 0cm">
<p class="MsoNormal"><b><span
style="font-size:11.0pt;font-family:"Calibri",sans-serif"
lang="EN-US">From:</span></b><span
style="font-size:11.0pt;font-family:"Calibri",sans-serif"
lang="EN-US">
<a class="moz-txt-link-abbreviated" href="mailto:flr-list-bounces@lists.r-forge.r-project.org">flr-list-bounces@lists.r-forge.r-project.org</a>
[<a class="moz-txt-link-freetext" href="mailto:flr-list-bounces@lists.r-forge.r-project.org">mailto:flr-list-bounces@lists.r-forge.r-project.org</a>]
<b>On Behalf Of </b><a class="moz-txt-link-abbreviated" href="mailto:Iago.MOSQUEIRA@ec.europa.eu">Iago.MOSQUEIRA@ec.europa.eu</a><br>
<b>Sent:</b> 21 February 2018 09:53<br>
<b>To:</b> <a class="moz-txt-link-abbreviated" href="mailto:flr-list@flr-project.org">flr-list@flr-project.org</a><br>
<b>Subject:</b> Re: [FLR-list] help with bubble plot<o:p></o:p></span></p>
</div>
</div>
<p class="MsoNormal"><o:p> </o:p></p>
<div>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Tahoma",sans-serif;color:black">Hi,<br>
<br>
Thanks. I have corrected readFLindicesVPA, and tested it
with 3 different files. Could you please reinstall FLCore
from the repository and confirm it is working fine?<br>
<br>
Thanks,<br>
<br>
<br>
Iago<o:p></o:p></span></p>
<div>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Tahoma",sans-serif;color:black"><o:p> </o:p></span></p>
<div>
<div>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Courier
New";color:black"><br>
-- <br>
Dr Iago Mosqueira<br>
<br>
European Commission<br>
DG Joint Research Centre<br>
Directorate D - Sustainable Resources <br>
Unit D.02 Water and Marine Resources<br>
<br>
TP 051, Via Enrico Fermi 2749<br>
I-21027 Ispra (VA), Italy<br>
<br>
Phone : +39 0332 785413<br>
<br>
<a href="mailto:iago.mosqueira@ec.europa.eu"
moz-do-not-send="true">iago.mosqueira@ec.europa.eu</a></span><span
style="font-size:10.0pt;font-family:"Tahoma",sans-serif;color:black"><o:p></o:p></span></p>
</div>
</div>
</div>
<div>
<div class="MsoNormal" style="text-align:center"
align="center"><span style="color:black">
<hr size="2" align="center" width="100%">
</span></div>
<div id="divRpF474464">
<p class="MsoNormal" style="margin-bottom:12.0pt"><b><span
style="font-size:10.0pt;font-family:"Tahoma",sans-serif;color:black">From:</span></b><span
style="font-size:10.0pt;font-family:"Tahoma",sans-serif;color:black">
<a
href="mailto:flr-list-bounces@lists.r-forge.r-project.org"
moz-do-not-send="true">flr-list-bounces@lists.r-forge.r-project.org</a>
[<a class="moz-txt-link-abbreviated" href="mailto:flr-list-bounces@lists.r-forge.r-project.org">flr-list-bounces@lists.r-forge.r-project.org</a>] on
behalf of Alessandro Orio [<a class="moz-txt-link-abbreviated" href="mailto:alessandro.orio@slu.se">alessandro.orio@slu.se</a>]<br>
<b>Sent:</b> 21 February 2018 08:36<br>
<b>To:</b> <a href="mailto:flr-list@flr-project.org"
moz-do-not-send="true">flr-list@flr-project.org</a><br>
<b>Subject:</b> Re: [FLR-list] help with bubble plot</span><span
style="color:black"><o:p></o:p></span></p>
</div>
<div>
<div>
<p class="MsoNormal"><span
style="font-size:11.0pt;font-family:"Arial",sans-serif;color:#44546A">Hi,</span><span
style="color:black"><o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size:11.0pt;font-family:"Arial",sans-serif;color:#44546A"> </span><span
style="color:black"><o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size:11.0pt;font-family:"Arial",sans-serif;color:#44546A"
lang="EN-GB">Here are two files.</span><span
style="color:black"><o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size:11.0pt;font-family:"Arial",sans-serif;color:#44546A"
lang="EN-GB"> </span><span style="color:black"><o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size:11.0pt;font-family:"Arial",sans-serif;color:#44546A"
lang="EN-GB">Cheers,</span><span style="color:black"><o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size:11.0pt;font-family:"Arial",sans-serif;color:#44546A"
lang="EN-GB"> </span><span style="color:black"><o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size:11.0pt;font-family:"Arial",sans-serif;color:#44546A">Ale</span><span
style="color:black"><o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size:11.0pt;font-family:"Arial",sans-serif;color:#44546A"> </span><span
style="color:black"><o:p></o:p></span></p>
<div>
<div style="border:none;border-top:solid #E1E1E1
1.0pt;padding:3.0pt 0cm 0cm 0cm">
<p class="MsoNormal"><b><span
style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:black"
lang="EN-US">From:</span></b><span
style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:black"
lang="EN-US">
<a
href="mailto:flr-list-bounces@lists.r-forge.r-project.org"
moz-do-not-send="true">flr-list-bounces@lists.r-forge.r-project.org</a>
[<a
href="mailto:flr-list-bounces@lists.r-forge.r-project.org"
moz-do-not-send="true">mailto:flr-list-bounces@lists.r-forge.r-project.org</a>]
<b>On Behalf Of </b>Iago Mosqueira<br>
<b>Sent:</b> 20 February 2018 18:06<br>
<b>To:</b> <a
href="mailto:flr-list@flr-project.org"
moz-do-not-send="true">flr-list@flr-project.org</a><br>
<b>Subject:</b> Re: [FLR-list] help with bubble
plot</span><span style="color:black"><o:p></o:p></span></p>
</div>
</div>
<p class="MsoNormal"><span style="color:black"> <o:p></o:p></span></p>
<div>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Verdana",sans-serif;color:black">Weird,
apologies. Could you please send me the files you
are using?<br>
<br>
<br>
Iago<br>
---<br>
Sent from mobile</span><span style="color:black"><o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Verdana",sans-serif;color:black"> </span><span
style="color:black"><o:p></o:p></span></p>
<div id="content">
<blockquote
style="margin-top:5.0pt;margin-bottom:5.0pt">
<p class="MsoNormal" style="margin-bottom:12.0pt"><span
style="font-size:10.0pt;font-family:"Verdana",sans-serif;color:black"><br>
---- On Tue, 20 Feb 2018 16:58:18 +0100 <b><a
href="mailto:alessandro.orio@slu.se"
target="_blank" moz-do-not-send="true">alessandro.orio@slu.se</a>
</b>wrote ----<br>
<br>
</span><span style="color:black"><o:p></o:p></span></p>
<div>
<div>
<p class="MsoNormal"><span
style="font-size:11.0pt;font-family:"Arial",sans-serif;color:#44546A">Hi
Iago,</span><span style="color:black"><o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size:11.0pt;font-family:"Arial",sans-serif;color:#44546A"> </span><span
style="color:black"><o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size:11.0pt;font-family:"Arial",sans-serif;color:#44546A">Sorry
to bother you again. It seems the plots
are now working but now readFLIndex and
readFLIndices are not working anymore. I
have tried with different tuning files.
With and without NAs and I always get this
error.</span><span style="color:black"><o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size:11.0pt;font-family:"Arial",sans-serif;color:#44546A"> </span><span
style="color:black"><o:p></o:p></span></p>
<p class="MsoNormal" style="background:white"><span
style="font-size:10.0pt;font-family:"Lucida
Console";color:#C5060B">Error in
<a href="mailto:x@.Data[[match%28i"
target="_blank" moz-do-not-send="true">x@.Data[[match(i</a>,
names(x))]] <- value :
</span><span style="color:black"><o:p></o:p></span></p>
<p class="MsoNormal" style="background:white"><span
style="font-size:10.0pt;font-family:"Lucida
Console";color:#C5060B"> attempt to
select less than one element in
integerOneIndex</span><span
style="color:black"><o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size:11.0pt;font-family:"Arial",sans-serif;color:#44546A"> </span><span
style="color:black"><o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size:11.0pt;font-family:"Arial",sans-serif;color:#44546A">Sorry,</span><span
style="color:black"><o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size:11.0pt;font-family:"Arial",sans-serif;color:#44546A"> </span><span
style="color:black"><o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size:11.0pt;font-family:"Arial",sans-serif;color:#44546A">Ale</span><span
style="color:black"><o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size:11.0pt;font-family:"Arial",sans-serif;color:#44546A"> </span><span
style="color:black"><o:p></o:p></span></p>
<div>
<div style="border:none;border-top:solid
#E1E1E1 1.0pt;padding:3.0pt 0cm 0cm 0cm">
<p class="MsoNormal"><b><span
style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:black">From:</span></b><span
style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:black">
<a
href="mailto:flr-list-bounces@lists.r-forge.r-project.org"
target="_blank"
moz-do-not-send="true">flr-list-bounces@lists.r-forge.r-project.org</a>
[mailto:<a
href="mailto:flr-list-bounces@lists.r-forge.r-project.org"
target="_blank"
moz-do-not-send="true">flr-list-bounces@lists.r-forge.r-project.org</a>]
<b>On Behalf Of </b>Iago Mosqueira<br>
<b>Sent:</b> 20 February 2018 15:25<br>
<b>To:</b> flr-list <<a
href="mailto:flr-list@flr-project.org"
target="_blank"
moz-do-not-send="true">flr-list@flr-project.org</a>><br>
<b>Subject:</b> Re: [FLR-list] help
with bubble plot</span><span
style="color:black"><o:p></o:p></span></p>
</div>
</div>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Verdana",sans-serif;color:black"> </span><span
style="color:black"><o:p></o:p></span></p>
<div>
<div>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Verdana",sans-serif;color:black">Hi,</span><span
style="color:black"><o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Verdana",sans-serif;color:black"> </span><span
style="color:black"><o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Verdana",sans-serif;color:black">FLCore
2.6.6 is now in the repository, and
bubbles appears to work again. Only
available in Windows for R 3.4</span><span
style="color:black"><o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Verdana",sans-serif;color:black"> </span><span
style="color:black"><o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Verdana",sans-serif;color:black">Best,</span><span
style="color:black"><o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Verdana",sans-serif;color:black"> </span><span
style="color:black"><o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Verdana",sans-serif;color:black"> </span><span
style="color:black"><o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Verdana",sans-serif;color:black">Iago</span><span
style="color:black"><o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Verdana",sans-serif;color:black"> </span><span
style="color:black"><o:p></o:p></span></p>
</div>
<div>
<div>
<div>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Verdana",sans-serif;color:black"> </span><span
style="color:black"><o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Verdana",sans-serif;color:black">----
On Mon, 19 Feb 2018 17:23:03
+0100 <b>Mikaela Bergenius <<a
href="mailto:mikaela.bergenius@slu.se" target="_blank"
moz-do-not-send="true">mikaela.bergenius@slu.se</a>></b>
wrote ----</span><span
style="color:black"><o:p></o:p></span></p>
</div>
</div>
<div>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Verdana",sans-serif;color:black"> </span><span
style="color:black"><o:p></o:p></span></p>
</div>
<blockquote
style="border:none;border-left:solid
#CCCCCC 1.0pt;padding:0cm 0cm 0cm
5.0pt;margin-left:3.75pt;margin-top:5.0pt;margin-right:0cm;margin-bottom:5.0pt">
<div>
<div>
<p class="MsoNormal"><span
style="font-size:11.0pt;font-family:"Arial",sans-serif;color:#44546A">Thanks
heaps!!</span><span
style="color:black"><o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size:11.0pt;font-family:"Arial",sans-serif;color:#44546A"> </span><span
style="color:black"><o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size:11.0pt;font-family:"Arial",sans-serif;color:#44546A">Best,
Mikaela</span><span
style="color:black"><o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size:11.0pt;font-family:"Arial",sans-serif;color:#44546A"> </span><span
style="color:black"><o:p></o:p></span></p>
<div>
<div
style="border:none;border-top:solid
#E1E1E1 1.0pt;padding:3.0pt 0cm
0cm 0cm">
<p class="MsoNormal"><b><span
style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:black">From:</span></b><span
style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:black">
<a
href="mailto:flr-list-bounces@lists.r-forge.r-project.org"
target="_blank"
moz-do-not-send="true">flr-list-bounces@lists.r-forge.r-project.org</a>
[mailto:<a
href="mailto:flr-list-bounces@lists.r-forge.r-project.org"
target="_blank"
moz-do-not-send="true">flr-list-bounces@lists.r-forge.r-project.org</a>]
<b>On Behalf Of </b>Alessandro
Orio<br>
<b>Sent:</b> den 19 februari
2018 14:24<br>
<b>To:</b> <a
href="mailto:flr-list@flr-project.org"
target="_blank"
moz-do-not-send="true">flr-list@flr-project.org</a><br>
<b>Subject:</b> Re:
[FLR-list] help with bubble
plot</span><span
style="color:black"><o:p></o:p></span></p>
</div>
</div>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Verdana",sans-serif;color:black"> </span><span
style="color:black"><o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size:11.0pt;font-family:"Arial",sans-serif;color:#44546A">Thanks
to you!!</span><span
style="color:black"><o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size:11.0pt;font-family:"Arial",sans-serif;color:#44546A"> </span><span
style="color:black"><o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size:11.0pt;font-family:"Arial",sans-serif;color:#44546A">Cheers,</span><span
style="color:black"><o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size:11.0pt;font-family:"Arial",sans-serif;color:#44546A"> </span><span
style="color:black"><o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size:11.0pt;font-family:"Arial",sans-serif;color:#44546A">Ale</span><span
style="color:black"><o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size:11.0pt;font-family:"Arial",sans-serif;color:#44546A"> </span><span
style="color:black"><o:p></o:p></span></p>
<div>
<div
style="border:none;border-top:solid
#E1E1E1 1.0pt;padding:3.0pt 0cm
0cm 0cm">
<p class="MsoNormal"><b><span
style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:black">From:</span></b><span
style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:black">
<a
href="mailto:flr-list-bounces@lists.r-forge.r-project.org"
target="_blank"
moz-do-not-send="true">flr-list-bounces@lists.r-forge.r-project.org</a>
[<a
href="mailto:flr-list-bounces@lists.r-forge.r-project.org"
target="_blank"
moz-do-not-send="true">mailto:flr-list-bounces@lists.r-forge.r-project.org</a>]
<b>On Behalf Of </b>Iago
Mosqueira<br>
<b>Sent:</b> 19 February
2018 13:22<br>
<b>To:</b> flr-list <<a
href="mailto:flr-list@flr-project.org"
target="_blank"
moz-do-not-send="true">flr-list@flr-project.org</a>><br>
<b>Subject:</b> Re:
[FLR-list] help with bubble
plot</span><span
style="color:black"><o:p></o:p></span></p>
</div>
</div>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Verdana",sans-serif;color:black"> </span><span
style="color:black"><o:p></o:p></span></p>
<div>
<div>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Verdana",sans-serif;color:black">Hi,</span><span
style="color:black"><o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Verdana",sans-serif;color:black"> </span><span
style="color:black"><o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Verdana",sans-serif;color:black">I
can replicate the problem
now. The code in the
development version of
FLCore does not have this
problem, although I cannot
see why the changes lead to
this.</span><span
style="color:black"><o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Verdana",sans-serif;color:black"> </span><span
style="color:black"><o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Verdana",sans-serif;color:black">I
will update FLCore in the
repository tomorrow to
version 2.6.6.</span><span
style="color:black"><o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Verdana",sans-serif;color:black"> </span><span
style="color:black"><o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Verdana",sans-serif;color:black">Thanks,</span><span
style="color:black"><o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Verdana",sans-serif;color:black"> </span><span
style="color:black"><o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Verdana",sans-serif;color:black"> </span><span
style="color:black"><o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Verdana",sans-serif;color:black">Iago</span><span
style="color:black"><o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Verdana",sans-serif;color:black"> </span><span
style="color:black"><o:p></o:p></span></p>
</div>
<div>
<div>
<div>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Verdana",sans-serif;color:black"> </span><span
style="color:black"><o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Verdana",sans-serif;color:black">----
On Mon, 19 Feb 2018
10:27:06 +0100 <b>Alessandro
Orio <<a
href="mailto:alessandro.orio@slu.se"
target="_blank"
moz-do-not-send="true">alessandro.orio@slu.se</a>></b>
wrote ----</span><span
style="color:black"><o:p></o:p></span></p>
</div>
</div>
<div>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Verdana",sans-serif;color:black"> </span><span
style="color:black"><o:p></o:p></span></p>
</div>
<blockquote
style="border:none;border-left:solid
#CCCCCC 1.0pt;padding:0cm 0cm
0cm
5.0pt;margin-left:3.75pt;margin-top:5.0pt;margin-right:0cm;margin-bottom:5.0pt">
<div>
<div>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Verdana",sans-serif;color:black"> </span><span
style="color:black"><o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size:11.0pt;font-family:"Arial",sans-serif;color:#44546A">Hi
Iago,</span><span
style="color:black"><o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size:11.0pt;font-family:"Arial",sans-serif;color:#44546A"> </span><span
style="color:black"><o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size:11.0pt;font-family:"Arial",sans-serif;color:#44546A">I’m
having the same exact
problem and I’m
working on the latest
version of the package
and on R 3.4.</span><span
style="color:black"><o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size:11.0pt;font-family:"Arial",sans-serif;color:#44546A"> </span><span
style="color:black"><o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size:11.0pt;font-family:"Arial",sans-serif;color:#44546A">This
is the plot of the
residuals of ple4…</span><span
style="color:black"><o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size:11.0pt;font-family:"Arial",sans-serif;color:#44546A"> </span><span
style="color:black"><o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size:11.0pt;font-family:"Arial",sans-serif;color:#44546A">Best,</span><span
style="color:black"><o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size:11.0pt;font-family:"Arial",sans-serif;color:#44546A"> </span><span
style="color:black"><o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size:11.0pt;font-family:"Arial",sans-serif;color:#44546A">Ale</span><span
style="color:black"><o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size:11.0pt;font-family:"Arial",sans-serif;color:#44546A"> </span><span
style="color:black"><o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size:11.0pt;font-family:"Arial",sans-serif;color:#44546A"> </span><span
style="color:black"><o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size:11.0pt;font-family:"Arial",sans-serif;color:#44546A"> </span><span
style="color:black"><o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size:11.0pt;font-family:"Arial",sans-serif;color:#44546A"> </span><span
style="color:black"><o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size:11.0pt;font-family:"Arial",sans-serif;color:#44546A"> </span><span
style="color:black"><o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size:11.0pt;font-family:"Arial",sans-serif;color:#44546A"> </span><span
style="color:black"><o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Verdana",sans-serif;color:black"><img
style="width:4.875in;height:3.5208in" id="_x0000_i1026"
src="cid:part20.55742133.D55F7503@gmail.com"
class="" width="468"
border="0"
height="338"></span><span
style="color:black"><o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size:11.0pt;font-family:"Arial",sans-serif;color:#44546A"> </span><span
style="color:black"><o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size:11.0pt;font-family:"Arial",sans-serif;color:#44546A"> </span><span
style="color:black"><o:p></o:p></span></p>
<div>
<div
style="border:none;border-top:solid
#E1E1E1
1.0pt;padding:3.0pt
0cm 0cm 0cm">
<p class="MsoNormal"><b><span
style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:black">From:</span></b><span
style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:black">
<a
href="mailto:flr-list-bounces@lists.r-forge.r-project.org"
target="_blank"
moz-do-not-send="true">flr-list-bounces@lists.r-forge.r-project.org</a>
[<a
href="mailto:flr-list-bounces@lists.r-forge.r-project.org"
target="_blank"
moz-do-not-send="true">mailto:flr-list-bounces@lists.r-forge.r-project.org</a>]
<b>On Behalf Of </b>Iago
Mosqueira<br>
<b>Sent:</b> 17
February 2018
16:26<br>
<b>To:</b>
flr-list <<a
href="mailto:flr-list@flr-project.org"
target="_blank"
moz-do-not-send="true">flr-list@flr-project.org</a>><br>
<b>Subject:</b>
Re: [FLR-list]
help with bubble
plot</span><span
style="color:black"><o:p></o:p></span></p>
</div>
</div>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Verdana",sans-serif;color:black"> </span><span
style="color:black"><o:p></o:p></span></p>
<div>
<div>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Verdana",sans-serif;color:black">Hi,</span><span
style="color:black"><o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Verdana",sans-serif;color:black"> </span><span
style="color:black"><o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Verdana",sans-serif;color:black">I
am testing it with
the index.res
obtained from
running FLXSA on
ple4 and
ple4.indices,
which also has
some NAs, and I am
getting no error</span><span
style="color:black"><o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Verdana",sans-serif;color:black"> </span><span
style="color:black"><o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Verdana",sans-serif;color:black">library(FLXSA)</span><span
style="color:black"><o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Verdana",sans-serif;color:black">data(ple4)</span><span
style="color:black"><o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Verdana",sans-serif;color:black">data(ple4.indices)</span><span
style="color:black"><o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Verdana",sans-serif;color:black"> </span><span
style="color:black"><o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Verdana",sans-serif;color:black">res
<- FLXSA(ple4,
ple4.indices)</span><span
style="color:black"><o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Verdana",sans-serif;color:black"> </span><span
style="color:black"><o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Verdana",sans-serif;color:black">bubbles(age
~ year|qname, data
= index.res(res))</span><span
style="color:black"><o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Verdana",sans-serif;color:black"> </span><span
style="color:black"><o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Verdana",sans-serif;color:black">Are
you on the latest
versions of the
package and on R
3.4?</span><span
style="color:black"><o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Verdana",sans-serif;color:black"> </span><span
style="color:black"><o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Verdana",sans-serif;color:black">Best,</span><span
style="color:black"><o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Verdana",sans-serif;color:black"> </span><span
style="color:black"><o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Verdana",sans-serif;color:black"> </span><span
style="color:black"><o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Verdana",sans-serif;color:black">Iago</span><span
style="color:black"><o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Verdana",sans-serif;color:black"> </span><span
style="color:black"><o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Verdana",sans-serif;color:black"> </span><span
style="color:black"><o:p></o:p></span></p>
</div>
<div>
<div>
<div>
<p
class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Verdana",sans-serif;color:black"> </span><span
style="color:black"><o:p></o:p></span></p>
</div>
<div>
<p
class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Verdana",sans-serif;color:black">----
On Tue, 13 Feb
2018 16:36:43
+0100 <b>Mikaela
Bergenius <<a
href="mailto:mikaela.bergenius@slu.se" target="_blank"
moz-do-not-send="true">mikaela.bergenius@slu.se</a>></b>
wrote ----</span><span
style="color:black"><o:p></o:p></span></p>
</div>
</div>
<div>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Verdana",sans-serif;color:black"> </span><span
style="color:black"><o:p></o:p></span></p>
</div>
<blockquote
style="border:none;border-left:solid
#CCCCCC
1.0pt;padding:0cm
0cm 0cm
5.0pt;margin-left:3.75pt;margin-top:5.0pt;margin-right:0cm;margin-bottom:5.0pt">
<div>
<div>
<p
class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Arial",sans-serif;color:black">Hi,</span><span
style="color:black"><o:p></o:p></span></p>
<p
class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Arial",sans-serif;color:black">Im
trying to plot
the
standardized
residuals of
my XSA using
the function
bubbles</span><span
style="color:black"><o:p></o:p></span></p>
<p
class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Arial",sans-serif;color:black">bubbles(age
~ year|qname,
data =
index.res(xsa.results7)).</span><span
style="color:black"><o:p></o:p></span></p>
<p
class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Arial",sans-serif;color:black">In
an earlier
version of R I
had no
problems with
this plot. Now
I get this
error message
in the plot:</span><span
style="color:black"><o:p></o:p></span></p>
<p
class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Arial",sans-serif;color:black"> </span><span
style="color:black"><o:p></o:p></span></p>
<p
class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Verdana",sans-serif;color:black"> </span><span
style="color:black"><o:p></o:p></span></p>
<p
class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Arial",sans-serif;color:black">The
problem is
that in this
newest version
of FL core if
I have NAs in
some years of
my index I
will not get
the plot.
While before I
was getting
only an empty
column in the
years with
NAs. Ca you
please advice
me on what to
do?</span><span
style="color:black"><o:p></o:p></span></p>
<p
class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Arial",sans-serif;color:black">Thank
you!</span><span
style="color:black"><o:p></o:p></span></p>
<p
class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Arial",sans-serif;color:black"> </span><span
style="color:black"><o:p></o:p></span></p>
<p
class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Arial",sans-serif;color:black">Mikaela</span><span
style="color:black"><o:p></o:p></span></p>
</div>
<div>
<p
class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Verdana",sans-serif;color:black">_______________________________________________</span><span
style="color:black"><o:p></o:p></span></p>
</div>
<div>
<p
class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Verdana",sans-serif;color:black">flr-list
mailing list</span><span
style="color:black"><o:p></o:p></span></p>
</div>
<div>
<p
class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Verdana",sans-serif;color:black"><a
href="mailto:flr-list@flr-project.org" target="_blank"
moz-do-not-send="true">flr-list@flr-project.org</a></span><span
style="color:black"><o:p></o:p></span></p>
</div>
<div>
<p
class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Verdana",sans-serif;color:black"><a
href="https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/flr-list"
target="_blank" moz-do-not-send="true">https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/flr-list</a></span><span
style="color:black"><o:p></o:p></span></p>
</div>
</div>
</blockquote>
</div>
<div>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Verdana",sans-serif;color:black"> </span><span
style="color:black"><o:p></o:p></span></p>
</div>
</div>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Verdana",sans-serif;color:black"> </span><span
style="color:black"><o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Verdana",sans-serif;color:black">_______________________________________________</span><span
style="color:black"><o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Verdana",sans-serif;color:black">flr-list
mailing list</span><span
style="color:black"><o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Verdana",sans-serif;color:black"><a
href="mailto:flr-list@flr-project.org" target="_blank"
moz-do-not-send="true">flr-list@flr-project.org</a></span><span
style="color:black"><o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Verdana",sans-serif;color:black"><a
href="https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/flr-list"
target="_blank"
moz-do-not-send="true">https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/flr-list</a></span><span
style="color:black"><o:p></o:p></span></p>
</div>
</div>
</blockquote>
</div>
<div>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Verdana",sans-serif;color:black"> </span><span
style="color:black"><o:p></o:p></span></p>
</div>
</div>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Verdana",sans-serif;color:black"> </span><span
style="color:black"><o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Verdana",sans-serif;color:black">_______________________________________________</span><span
style="color:black"><o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Verdana",sans-serif;color:black">flr-list
mailing list
</span><span style="color:black"><o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Verdana",sans-serif;color:black"><a
href="mailto:flr-list@flr-project.org" target="_blank"
moz-do-not-send="true">flr-list@flr-project.org</a>
</span><span style="color:black"><o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Verdana",sans-serif;color:black"><a
href="https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/flr-list"
target="_blank"
moz-do-not-send="true">https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/flr-list</a>
</span><span style="color:black"><o:p></o:p></span></p>
</div>
</div>
</blockquote>
</div>
<div>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Verdana",sans-serif;color:black"> </span><span
style="color:black"><o:p></o:p></span></p>
</div>
</div>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Verdana",sans-serif;color:black"> </span><span
style="color:black"><o:p></o:p></span></p>
</div>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Verdana",sans-serif;color:black">_______________________________________________
<br>
flr-list mailing list <br>
<a href="mailto:flr-list@flr-project.org"
target="_blank" moz-do-not-send="true">flr-list@flr-project.org</a>
<br>
<a
href="https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/flr-list"
target="_blank" moz-do-not-send="true">https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/flr-list</a>
</span><span style="color:black"><o:p></o:p></span></p>
</div>
</blockquote>
</div>
</div>
<p class="MsoNormal"><span style="color:black"> <o:p></o:p></span></p>
</div>
</div>
</div>
</div>
</div>
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<pre wrap="">_______________________________________________
flr-list mailing list
<a class="moz-txt-link-abbreviated" href="mailto:flr-list@flr-project.org">flr-list@flr-project.org</a>
<a class="moz-txt-link-freetext" href="https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/flr-list">https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/flr-list</a>
</pre>
</blockquote>
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