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<div style="direction: ltr;font-family: Tahoma;color: #000000;font-size: 10pt;">Hi,<br>
<br>
We have only been testing it for R 3.4, at least for windows. I suspect the version of gcc in RTools 3.3 is not modern enough.<br>
<br>
<br>
Iago<br>
<div><br>
<div style="font-family:Tahoma; font-size:13px">
<div style="font-family:Tahoma; font-size:13px"><font face="Courier New"><br>
-- <br>
Dr Iago Mosqueira<br>
<br>
European Commission<br>
DG Joint Research Centre<br>
Directorate D - Sustainable Resources <br>
Unit D.02 Water and Marine Resources<br>
<br>
TP 051, Via Enrico Fermi 2749<br>
I-21027 Ispra (VA), Italy<br>
<br>
Phone : +39 0332 785413<br>
<br>
iago.mosqueira@ec.europa.eu</font></div>
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<div id="divRpF499340" style="direction: ltr;"><font color="#000000" size="2" face="Tahoma"><b>From:</b> flr-list-bounces@lists.r-forge.r-project.org [flr-list-bounces@lists.r-forge.r-project.org] on behalf of Hintzen, Niels [niels.hintzen@wur.nl]<br>
<b>Sent:</b> 06 October 2017 12:10<br>
<b>To:</b> flr-list@flr-project.org<br>
<b>Subject:</b> [FLR-list] Problems installing FLasher on R3.3.3.<br>
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<p class="MsoNormal"><span style="font-size:10.0pt; font-family:"Verdana",sans-serif">Dear all,</span></p>
<p class="MsoNormal"><span style="font-size:10.0pt; font-family:"Verdana",sans-serif"> </span></p>
<p class="MsoNormal"><span style="font-size:10.0pt; font-family:"Verdana",sans-serif">I don’t manage to get Flasher installed on R3.3.3. I do have an up-to-date gcc compiler, but something goes wrong. Any suggestions? Full error message below.</span></p>
<p class="MsoNormal"><span style="font-size:10.0pt; font-family:"Verdana",sans-serif"> </span></p>
<p class="MsoNormal"><span style="font-size:10.0pt; font-family:"Verdana",sans-serif">Thanks,</span></p>
<p class="MsoNormal"><span style="font-size:10.0pt; font-family:"Verdana",sans-serif"> </span></p>
<p class="MsoNormal"><span style="font-size:10.0pt; font-family:"Verdana",sans-serif">Niels</span></p>
<p class="MsoNormal"><span style="font-size:10.0pt; font-family:"Verdana",sans-serif"> </span></p>
<p class="MsoNormal"><span style="font-size:10.0pt; font-family:"Verdana",sans-serif"> </span></p>
<p class="MsoNormal"><span style="font-size:10.0pt; font-family:"Verdana",sans-serif"> </span></p>
<p class="MsoNormal"><span style="font-size:10.0pt; font-family:"Verdana",sans-serif">* installing *source* package 'FLasher' ...</span></p>
<p class="MsoNormal"><span style="font-size:10.0pt; font-family:"Verdana",sans-serif">** libs</span></p>
<p class="MsoNormal"><span style="font-size:10.0pt; font-family:"Verdana",sans-serif"> </span></p>
<p class="MsoNormal"><span style="font-size:10.0pt; font-family:"Verdana",sans-serif">*** arch - i386</span></p>
<p class="MsoNormal"><span style="font-size:10.0pt; font-family:"Verdana",sans-serif">c:/Rtools/mingw_32/bin/g++ -std=c++0x -I"C:/PROGRA~1/R/R-33~1.3/include" -DNDEBUG -I"C:/Program Files/R/R-3.3.3/library/Rcpp/include" -I"d:/Compiler/gcc-4.9.3/local330/include"
-I../inst/include -O2 -Wall -mtune=core2 -c FLCatch.cpp -o FLCatch.o</span></p>
<p class="MsoNormal"><span style="font-size:10.0pt; font-family:"Verdana",sans-serif">In file included from ../inst/include/cppad/local/recorder.hpp:15:0,</span></p>
<p class="MsoNormal"><span style="font-size:10.0pt; font-family:"Verdana",sans-serif"> from ../inst/include/cppad/core/ad.hpp:21,</span></p>
<p class="MsoNormal"><span style="font-size:10.0pt; font-family:"Verdana",sans-serif"> from ../inst/include/cppad/cppad.hpp:55,</span></p>
<p class="MsoNormal"><span style="font-size:10.0pt; font-family:"Verdana",sans-serif"> from ../inst/include/FLQuant_base.h:7,</span></p>
<p class="MsoNormal"><span style="font-size:10.0pt; font-family:"Verdana",sans-serif"> from ../inst/include/FLCatch.h:10,</span></p>
<p class="MsoNormal"><span style="font-size:10.0pt; font-family:"Verdana",sans-serif"> from FLCatch.cpp:6:</span></p>
<p class="MsoNormal"><span style="font-size:10.0pt; font-family:"Verdana",sans-serif">../inst/include/cppad/local/pod_vector.hpp:58:25: error: redefinition of 'bool CppAD::local::is_pod() [with Type = unsigned int]'</span></p>
<p class="MsoNormal"><span style="font-size:10.0pt; font-family:"Verdana",sans-serif">template <> inline bool is_pod<size_t>(void) { return true; }</span></p>
<p class="MsoNormal"><span style="font-size:10.0pt; font-family:"Verdana",sans-serif"> ^</span></p>
<p class="MsoNormal"><span style="font-size:10.0pt; font-family:"Verdana",sans-serif">../inst/include/cppad/local/pod_vector.hpp:56:25: note: 'bool CppAD::local::is_pod() [with Type = unsigned int]' previously declared here</span></p>
<p class="MsoNormal"><span style="font-size:10.0pt; font-family:"Verdana",sans-serif">template <> inline bool is_pod<unsigned int>(void) { return true; }</span></p>
<p class="MsoNormal"><span style="font-size:10.0pt; font-family:"Verdana",sans-serif"> ^</span></p>
<p class="MsoNormal"><span style="font-size:10.0pt; font-family:"Verdana",sans-serif">make: *** [FLCatch.o] Error 1</span></p>
<p class="MsoNormal"><span style="font-size:10.0pt; font-family:"Verdana",sans-serif">Warning: running command 'make -f "Makevars.win" -f "C:/PROGRA~1/R/R-33~1.3/etc/i386/Makeconf" -f "C:/PROGRA~1/R/R-33~1.3/share/make/winshlib.mk" CXX='$(CXX1X) $(CXX1XSTD)'
CXXFLAGS='$(CXX1XFLAGS)' CXXPICFLAGS='$(CXX1XPICFLAGS)' SHLIB_LDFLAGS='$(SHLIB_CXX1XLDFLAGS)' SHLIB_LD='$(SHLIB_CXX1XLD)' SHLIB="FLasher.dll" OBJECTS="FLCatch.o FLFishery.o FLQuant_base.o FLQuant_multidim.o FLStock.o RcppExports.o fwdBiol.o fwdControl.o fwdSR.o
operating_model.o solver.o tests_FLCatch.o tests_FLFishery.o tests_FLQuant.o tests_FLQuantAD.o tests_FLQuant_multidim.o tests_FLStock.o tests_arithmetic_operators.o tests_fwdBiol.o tests_fwdControl.o tests_fwdSR.o tests_operatingModel.o tests_profiling.o tests_solver.o"'
had status 2</span></p>
<p class="MsoNormal"><span style="font-size:10.0pt; font-family:"Verdana",sans-serif">ERROR: compilation failed for package 'FLasher'</span></p>
<p class="MsoNormal"><span style="font-size:10.0pt; font-family:"Verdana",sans-serif">* removing 'C:/Program Files/R/R-3.3.3/library/FLasher'</span></p>
<p class="MsoNormal"><span style="font-size:10.0pt; font-family:"Verdana",sans-serif"> </span></p>
<p class="MsoNormal"><span style="font-size:10.0pt; font-family:"Verdana",sans-serif">The downloaded source packages are in</span></p>
<p class="MsoNormal"><span style="font-size:10.0pt; font-family:"Verdana",sans-serif"> ‘C:\Users\hintz001\AppData\Local\Temp\Rtmp6dzPgy\downloaded_packages’</span></p>
<p class="MsoNormal"><span style="font-size:10.0pt; font-family:"Verdana",sans-serif">Warning messages:</span></p>
<p class="MsoNormal"><span style="font-size:10.0pt; font-family:"Verdana",sans-serif">1: running command '"C:/PROGRA~1/R/R-33~1.3/bin/x64/R" CMD INSTALL -l "C:\Program Files\R\R-3.3.3\library" C:\Users\hintz001\AppData\Local\Temp\Rtmp6dzPgy/downloaded_packages/FLasher_0.0.3.tar.gz'
had status 1 </span></p>
<p class="MsoNormal"><span style="font-size:10.0pt; font-family:"Verdana",sans-serif">2: In install.packages(pkgs, repos = "http://flr-project.org/R") :</span></p>
<p class="MsoNormal"><span style="font-size:10.0pt; font-family:"Verdana",sans-serif"> installation of package ‘FLasher’ had non-zero exit status</span></p>
<p class="MsoNormal"><span style="font-size:10.0pt; font-family:"Verdana",sans-serif">> </span></p>
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