<html><head><meta http-equiv="Content-Type" content="text/html charset=utf-8"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class="">Thank you Iago: it is working now! <div class=""><br class=""></div><div class="">Best,</div><div class=""><br class=""><div class="">Piera</div><div class=""><br class=""><div apple-content-edited="true" class="">
<div style="color: rgb(0, 0, 0); letter-spacing: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-stroke-width: 0px; word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class="">----------------------------------</div><div style="color: rgb(0, 0, 0); letter-spacing: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-stroke-width: 0px; word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class="">Piera Carpi, Ph.D.<br class="">Istituto di Scienze del Mare (CNR-ISMAR)<br class="">Sezione Pesca Marittima-Ancona<br class="">Largo Fiera della Pesca<br class="">60125, Ancona - ITALY<br class="">Tel: 071-2078858<br class="">Fax: 071-55313<br class="">e-mail: <a href="mailto:piera.carpi@an.ismar.cnr.it" class="">piera.carpi@an.ismar.cnr.it</a><br class=""><br class=""><br class=""></div>
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<br class=""><div><blockquote type="cite" class=""><div class="">On 28 Jan 2016, at 22:02, Iago MOSQUEIRA (JRC) <<a href="mailto:iago.mosqueira@jrc.ec.europa.eu" class="">iago.mosqueira@jrc.ec.europa.eu</a>> wrote:</div><br class="Apple-interchange-newline"><div class=""><br class="">Dear all,<br class=""><br class="">The corrected packages are now available on the repository for R 3.2<br class=""><br class="">Best,<br class=""><br class=""><br class="">Iago<br class=""><br class="">On 28/01/16 16:07, Iago MOSQUEIRA (JRC) wrote:<br class=""><blockquote type="cite" class="">Hi,<br class=""><br class="">The issue has been a change in the latest version of ggplot2 that broke<br class="">some of our code. Fixed now in ggplotFL in github, will upload an<br class="">updated package to the repository later today.<br class=""><br class="">If you can compile packages, you can test it using devtools to install<br class="">from github<br class=""><br class="">library(devtools)<br class=""><br class="">install_github('flr/ggplotFL')<br class=""><br class="">library(ggplotFL)<br class=""><br class="">data(nsher)<br class=""><br class="">plot(nsher)<br class=""><br class=""><br class="">Thanks both for reporting it<br class=""><br class="">Best,<br class=""><br class=""><br class="">Iago<br class=""><br class=""><br class="">On 28/01/16 15:54, Marc Taylor wrote:<br class=""><blockquote type="cite" class="">Hi all,<br class=""><br class="">I was curious for an answer to this as well. I thought I would chime in<br class="">with an example where the same happens for me.<br class=""><br class="">The plot of the FLSR object works until one loads the FLBRP package:<br class=""><br class="">###########<br class="">library(FLCore)<br class="">data("ple4")<br class="">ple4_sr <- as.FLSR(ple4)<br class="">model(ple4_sr) <- "ricker"<br class="">ple4_sr <- fmle(ple4_sr)<br class="">plot(ple4_sr) # works<br class=""><br class="">library(FLBRP)<br class="">plot(ple4_sr) # works no longer<br class="">############<br class=""><br class="">Cheers,<br class="">Marc<br class=""><br class="">Dr. Marc Taylor<br class="">Marine Lebende Resourcen / Marine Living Resources<br class="">Thünen-Institut für Seefischerei / Thünen Institute of Sea Fisheries<br class="">Palmaille 9<br class="">22767 Hamburg, Germany<br class=""><br class="">Tel: +49 40 38905-143<br class="">Mail:marc.taylor@<a href="http://ti.bund.de" class="">ti.bund.de</a><br class="">Web:www.ti.bund.de<br class=""><br class="">On 1/28/2016 3:43 PM, Iago MOSQUEIRA (JRC) wrote:<br class=""><blockquote type="cite" class="">Hi,<br class=""><br class="">It works here with the same versions.<br class=""><br class="">Can you try<br class=""><br class="">- on a clean session loading ggplotFL and running it<br class="">- clean session, load ggplot2, then ggplotFL, then run<br class=""><br class="">and report the results?<br class=""><br class="">There could also be some method conflict withj some of the other pkgs<br class="">in your session.<br class=""><br class="">Cheers,<br class=""><br class=""><br class="">Iago<br class=""><br class="">On 26/01/16 13:18, Piera Carpi wrote:<br class=""><blockquote type="cite" class="">Hi all,<br class="">I’m trying to plot a FLSR object, but whenever I do:<br class=""><br class="">sr <- fmle(as.FLSR(stk, model=“ricker”))<br class="">plot(sr)<br class=""><br class="">I obtain the following output, and no plots at all:<br class=""><br class="">TableGrob (3 x 2) "arrange": 6 grobs<br class=""> z cells name grob<br class="">1 1 (1-1,1-1) arrange gtable[layout]<br class="">2 2 (1-1,2-2) arrange gtable[layout]<br class="">3 3 (2-2,1-1) arrange gtable[layout]<br class="">4 4 (2-2,2-2) arrange gtable[layout]<br class="">5 5 (3-3,1-1) arrange gtable[layout]<br class="">6 6 (3-3,2-2) arrange gtable[layout]<br class=""><br class=""><br class="">Below info on my R session:<br class=""><br class=""><br class="">R version 3.2.2 (2015-08-14)<br class="">Platform: x86_64-pc-linux-gnu (64-bit)<br class="">Running under: Ubuntu 14.04.3 LTS<br class=""><br class="">locale:<br class=""> [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C<br class="">LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8<br class=""> [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8<br class=""> LC_PAPER=en_US.UTF-8 LC_NAME=C<br class=""> [9] LC_ADDRESS=C LC_TELEPHONE=C<br class="">LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C<br class=""><br class="">attached base packages:<br class="">[1] grid stats graphics grDevices utils datasets methods<br class=""> base<br class=""><br class="">other attached packages:<br class=""> [1] msy_0.1.16 FLSAM_1.0 FLBRP_2.5.20140822<br class=""> plyr_1.8.3 ggplotFL_2.5.20141027<br class=""> [6] reshape2_1.4.1 gridExtra_2.0.0 ggplot2_1.0.1<br class="">FLa4a_0.300.2 copula_0.999-13<br class="">[11] triangle_0.8 mgcv_1.8-7 nlme_3.1-121<br class=""> FLXSA_2.5.20140808 FLAssess_2.5.20130716<br class="">[16] FLash_2.5.2 FLCore_2.5.20150513 MASS_7.3-43<br class="">lattice_0.20-33 RevoUtilsMath_3.2.2<br class=""><br class="">loaded via a namespace (and not attached):<br class=""> [1] Rcpp_0.12.1 tools_3.2.2 digest_0.6.8 gtable_0.1.2<br class=""> pspline_1.0-17 Matrix_1.2-2 yaml_2.1.13<br class=""> [8] mvtnorm_1.0-3 proto_0.3-10 knitr_1.11 stringr_1.0.0<br class=""> stats4_3.2.2 ADGofTest_0.3 rmarkdown_0.7<br class="">[15] magrittr_1.5 htmltools_0.2.6 scales_0.3.0 stabledist_0.7-0<br class="">colorspace_1.2-6 labeling_0.3 stringi_0.5-5<br class="">[22] gsl_1.9-10 munsell_0.4.2”<br class=""><br class=""><br class="">Any idea why?<br class=""><br class="">Thanks in advance!<br class=""><br class="">Piera<br class=""><br class=""><br class=""><br class=""><br class="">----------------------------------<br class="">Piera Carpi, Ph.D.<br class="">Istituto di Scienze del Mare (CNR-ISMAR)<br class="">Sezione Pesca Marittima-Ancona<br class="">Largo Fiera della Pesca<br class="">60125, Ancona - ITALY<br class="">Tel: 071-2078858<br class="">Fax: 071-55313<br class="">e-mail: <a href="mailto:piera.carpi@an.ismar.cnr.it" class="">piera.carpi@an.ismar.cnr.it</a><br class=""><<a href="mailto:piera.carpi@an.ismar.cnr.it" class="">mailto:piera.carpi@an.ismar.cnr.it</a>><br class=""><br class=""><br class=""><br class=""><br class=""><br class="">_______________________________________________<br class="">flr-list mailing list<br class=""><a href="mailto:flr-list@flr-project.org" class="">flr-list@flr-project.org</a><br class="">https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/flr-list<br class=""><br class=""></blockquote><br class=""></blockquote><br class=""><br class=""><br class="">_______________________________________________<br class="">flr-list mailing list<br class=""><a href="mailto:flr-list@flr-project.org" class="">flr-list@flr-project.org</a><br class="">https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/flr-list<br class=""><br class=""></blockquote><br class=""></blockquote><br class="">_______________________________________________<br class="">flr-list mailing list<br class=""><a href="mailto:flr-list@flr-project.org" class="">flr-list@flr-project.org</a><br class="">https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/flr-list<br class=""></div></blockquote></div><br class=""></div></div></body></html>