<div dir="ltr"><br clear="all"><div><div class="gmail_signature"><div><span style="color:rgb(0,0,0);font-size:13px">Hi all,</span><div style="color:rgb(0,0,0);font-size:13px"><br></div><div style="color:rgb(0,0,0);font-size:13px">Trying to work with a FLStock object.</div><div style="color:rgb(0,0,0);font-size:13px">When doing a basic call like:</div><div style="color:rgb(0,0,0);font-size:13px"><br></div><div style="color:rgb(0,0,0);font-size:13px"><div>> plot(stock)</div><div>Warning messages:</div><div>1: In FLCore:::uom(op, units(e1), units(e2)) :</div><div> incompatible units of measurements in FLQuant objects: f + NA</div><div>2: In `[<-.factor`(`*tmp*`, ri, value = c(3, 3, 3, 3, 3, 3, 3, 3, 3, :</div><div> invalid factor level, NA generated</div><div><br></div><div>I get the graph but the warning propagates forward to other function calls like</div><div><br></div><div>eqsr_fit(stock,.....) in packaǵe "msy":<br></div><div><br></div><div><div>> eqsr_fit(stock,</div><div>+ <span style="white-space:pre-wrap"> </span> nsamp = 1000,</div><div>+ <span style="white-space:pre-wrap"> </span> <a href="http://id.sr/" target="_blank">id.sr</a> = "mystock",</div><div>+ <span style="white-space:pre-wrap"> </span> models = c("segreg"),</div><div>+ <span style="white-space:pre-wrap"> </span> method = "Buckland")</div></div><div><div><br></div><div><div>Warning message:</div><div>In FLCore:::uom(op, units(e1), units(e2)) :</div><div> incompatible units of measurements in FLQuant objects: f + NA</div></div><div><br></div><div>The units in the "stock" object are:</div><div><br></div><div><div>> units(stock)</div><div>$catch</div><div>[1] "tonnes"</div><div><br></div><div>$catch.n</div><div>[1] "thousands"</div><div><br></div><div>$catch.wt</div><div>[1] "kg"</div><div><br></div><div>$discards</div><div>[1] "tonnes"</div><div><br></div><div>$discards.n</div><div>[1] "thousands"</div><div><br></div><div>$discards.wt</div><div>[1] "kg"</div><div><br></div><div>$landings</div><div>[1] "tonnes"</div><div><br></div><div>$landings.n</div><div>[1] "thousands"</div><div><br></div><div>$landings.wt</div><div>[1] "kg"</div><div><br></div><div>$stock</div><div>[1] "tonnes"</div><div><br></div><div>$stock.n</div><div>[1] "NA"</div><div><br></div><div>$stock.wt</div><div>[1] "kg"</div><div><br></div><div>$m</div><div>[1] "NA"</div><div><br></div><div>$mat</div><div>[1] "NA"</div><div><br></div><div>$harvest</div><div>[1] "f"</div><div><br></div><div>$harvest.spwn</div><div>[1] "NA"</div></div><div><br></div><div><br></div><div>I'm using:</div><div><br></div><div><div>R version 3.0.2 <a href="tel:%282013-09-25" value="+4520130925" target="_blank">(2013-09-25</a>)</div><div>Platform: x86_64-pc-linux-gnu (64-bit) UBUNTU</div><div><br></div><div>and FLCore version FLCore_2.5.<a href="tel:20140213" value="+4520140213" target="_blank">20140213</a> </div><div><br></div><div><br></div><div>Thanks in advance</div><div><br></div><div>#######################################################</div><div>The full sessionInfo() is below:</div><div>#######################################################</div><div><div><br></div><div>> sessionInfo()</div><div>R version 3.0.2 <a href="tel:%282013-09-25" value="+4520130925" target="_blank">(2013-09-25</a>)</div><div>Platform: x86_64-pc-linux-gnu (64-bit)</div><div><br></div><div>locale:</div><div> [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8 LC_MONETARY=en_US.UTF-8 </div><div> [6] LC_MESSAGES=en_US.UTF-8 LC_PAPER=en_US.UTF-8 LC_NAME=C LC_ADDRESS=C LC_TELEPHONE=C </div><div>[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C </div><div><br></div><div>attached base packages:</div><div>[1] grid stats graphics grDevices utils datasets methods base </div><div><br></div><div>other attached packages:</div><div> [1] msy_0.1.12 stringr_0.6.2 R2admb_0.7.10 gridExtra_0.9.1 ggplot2_1.0.0 reshape2_1.2.2 </div><div> [7] scam_1.1-8 mgcv_1.7-28 nlme_3.1-113 devtools_1.5 FLCore_2.5.20140213 MASS_7.3-29 </div><div>[13] lattice_0.20-29 xtable_1.7-1 plyr_1.8.1 </div><div><br></div><div>loaded via a namespace (and not attached):</div><div> [1] colorspace_1.2-4 dichromat_2.0-0 digest_0.6.4 evaluate_0.5.5 formatR_0.10 gtable_0.1.2 httr_0.4 </div><div> [8] knitr_1.6 labeling_0.2 Matrix_1.1-2 memoise_0.2.1 munsell_0.4.2 parallel_3.0.2 proto_0.3-10 </div><div>[15] RColorBrewer_1.0-5 Rcpp_0.11.0 RCurl_1.95-4.3 scales_0.2.3 splines_3.0.2 stats4_3.0.2 tools_3.0.2 </div><div>[22] whisker_0.3-2 </div></div></div></div></div></div><div><br></div></div></div>
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