[FLR-list] help with bubble plot

Wed Feb 21 10:13:11 CET 2018

Thanks now it is working!
Cheers,

Ale

From: flr-list-bounces at lists.r-forge.r-project.org [mailto:flr-list-bounces at lists.r-forge.r-project.org] On Behalf Of Iago.MOSQUEIRA at ec.europa.eu
Sent: 21 February 2018 09:53
To: flr-list at flr-project.org
Subject: Re: [FLR-list] help with bubble plot

Hi,

Thanks. I have corrected readFLindicesVPA, and tested it with 3 different files. Could you please reinstall FLCore from the repository and confirm it is working fine?

Thanks,

Iago

--
Dr Iago Mosqueira

European Commission
DG Joint Research Centre
Directorate D - Sustainable Resources
Unit D.02 Water and Marine Resources

TP 051, Via Enrico Fermi 2749
I-21027 Ispra (VA), Italy

Phone : +39 0332 785413

iago.mosqueira at ec.europa.eu<mailto:iago.mosqueira at ec.europa.eu>
________________________________
From: flr-list-bounces at lists.r-forge.r-project.org<mailto:flr-list-bounces at lists.r-forge.r-project.org> [flr-list-bounces at lists.r-forge.r-project.org] on behalf of Alessandro Orio [alessandro.orio at slu.se]
Sent: 21 February 2018 08:36
To: flr-list at flr-project.org<mailto:flr-list at flr-project.org>
Subject: Re: [FLR-list] help with bubble plot
Hi,

Here are two files.

Cheers,

Ale

From: flr-list-bounces at lists.r-forge.r-project.org<mailto:flr-list-bounces at lists.r-forge.r-project.org> [mailto:flr-list-bounces at lists.r-forge.r-project.org] On Behalf Of Iago Mosqueira
Sent: 20 February 2018 18:06
To: flr-list at flr-project.org<mailto:flr-list at flr-project.org>
Subject: Re: [FLR-list] help with bubble plot

Weird, apologies. Could you please send me the files you are using?

Iago
---
Sent from mobile

---- On Tue, 20 Feb 2018 16:58:18 +0100 alessandro.orio at slu.se<mailto:alessandro.orio at slu.se> wrote ----

Hi Iago,

Sorry to bother you again. It seems the plots are now working but now readFLIndex and readFLIndices are not working anymore. I have tried with different tuning files. With and without NAs and I always get this error.

Error in x at .Data[[match(i<mailto:x at .Data[[match(i>, names(x))]] <- value :
  attempt to select less than one element in integerOneIndex

Sorry,

Ale

From: flr-list-bounces at lists.r-forge.r-project.org<mailto:flr-list-bounces at lists.r-forge.r-project.org> [mailto:flr-list-bounces at lists.r-forge.r-project.org<mailto:flr-list-bounces at lists.r-forge.r-project.org>] On Behalf Of Iago Mosqueira
Sent: 20 February 2018 15:25
To: flr-list <flr-list at flr-project.org<mailto:flr-list at flr-project.org>>
Subject: Re: [FLR-list] help with bubble plot

Hi,

FLCore 2.6.6 is now in the repository, and bubbles appears to work again. Only available in Windows for R 3.4

Best,

Iago

---- On Mon, 19 Feb 2018 17:23:03 +0100 Mikaela Bergenius <mikaela.bergenius at slu.se<mailto:mikaela.bergenius at slu.se>> wrote ----

Thanks heaps!!

Best, Mikaela

From: flr-list-bounces at lists.r-forge.r-project.org<mailto:flr-list-bounces at lists.r-forge.r-project.org> [mailto:flr-list-bounces at lists.r-forge.r-project.org<mailto:flr-list-bounces at lists.r-forge.r-project.org>] On Behalf Of Alessandro Orio
Sent: den 19 februari 2018 14:24
To: flr-list at flr-project.org<mailto:flr-list at flr-project.org>
Subject: Re: [FLR-list] help with bubble plot

Thanks to you!!

Cheers,

Ale

From: flr-list-bounces at lists.r-forge.r-project.org<mailto:flr-list-bounces at lists.r-forge.r-project.org> [mailto:flr-list-bounces at lists.r-forge.r-project.org] On Behalf Of Iago Mosqueira
Sent: 19 February 2018 13:22
To: flr-list <flr-list at flr-project.org<mailto:flr-list at flr-project.org>>
Subject: Re: [FLR-list] help with bubble plot

Hi,

I can replicate the problem now. The code in the development version of FLCore does not have this problem, although I cannot see why the changes lead to this.

I will update FLCore in the repository tomorrow to version 2.6.6.

Thanks,

Iago

---- On Mon, 19 Feb 2018 10:27:06 +0100 Alessandro Orio <alessandro.orio at slu.se<mailto:alessandro.orio at slu.se>> wrote ----

Hi Iago,

I'm having the same exact problem and I'm working on the latest version of the package and on R 3.4.

This is the plot of the residuals of ple4...

Best,

Ale

[cid:image001.jpg at 01D3AAFC.93A41180]

From: flr-list-bounces at lists.r-forge.r-project.org<mailto:flr-list-bounces at lists.r-forge.r-project.org> [mailto:flr-list-bounces at lists.r-forge.r-project.org] On Behalf Of Iago Mosqueira
Sent: 17 February 2018 16:26
To: flr-list <flr-list at flr-project.org<mailto:flr-list at flr-project.org>>
Subject: Re: [FLR-list] help with bubble plot

Hi,

I am testing it with the index.res obtained from running FLXSA on ple4 and ple4.indices, which also has some NAs, and I am getting no error

library(FLXSA)
data(ple4)
data(ple4.indices)

res <- FLXSA(ple4, ple4.indices)

bubbles(age ~ year|qname, data = index.res(res))

Are you on the latest versions of the package and on R 3.4?

Best,

Iago

---- On Tue, 13 Feb 2018 16:36:43 +0100 Mikaela Bergenius <mikaela.bergenius at slu.se<mailto:mikaela.bergenius at slu.se>> wrote ----

Hi,
Im trying to plot the standardized residuals of my XSA using the function bubbles
bubbles(age ~ year|qname, data = index.res(xsa.results7)).
In an earlier version of R I had no problems with this plot. Now I get this error message in the plot:

The problem is that in this newest version of FL core if I have NAs in some years of my index I will not get the plot. While before I was getting only an  empty column in the years with NAs. Ca you please advice me on what to do?
Thank you!

Mikaela
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