[FLR-list] help with bubble plot

[Iago Mosqueira]

Weird, apologies. Could you please send me the files you are using?


Iago
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---- On Tue, 20 Feb 2018 16:58:18 +0100 alessandro.orio at slu.se wrote ----

Hi Iago,

 

Sorry to bother you again. It seems the plots are now working but now readFLIndex and readFLIndices are not working anymore. I have tried with different tuning files. With and without NAs and I always get this error.

 

Error in x at .Data[[match(i, names(x))]] <- value :

  attempt to select less than one element in integerOneIndex

 

Sorry,

 

Ale

 

From: flr-list-bounces at lists.r-forge.r-project.org [mailto:flr-list-bounces at lists.r-forge.r-project.org] On Behalf Of Iago Mosqueira
Sent: 20 February 2018 15:25
To: flr-list <flr-list at flr-project.org>
Subject: Re: [FLR-list] help with bubble plot

 

Hi,

 

FLCore 2.6.6 is now in the repository, and bubbles appears to work again. Only available in Windows for R 3.4

 

Best,

 

 

Iago

 

 

---- On Mon, 19 Feb 2018 17:23:03 +0100 Mikaela Bergenius <mikaela.bergenius at slu.se> wrote ----

 

Thanks heaps!!

 

Best, Mikaela

 

From: flr-list-bounces at lists.r-forge.r-project.org [mailto:flr-list-bounces at lists.r-forge.r-project.org] On Behalf Of Alessandro Orio
Sent: den 19 februari 2018 14:24
To: flr-list at flr-project.org
Subject: Re: [FLR-list] help with bubble plot

 

Thanks to you!!

 

Cheers,

 

Ale

 

From: flr-list-bounces at lists.r-forge.r-project.org [mailto:flr-list-bounces at lists.r-forge.r-project.org] On Behalf Of Iago Mosqueira
Sent: 19 February 2018 13:22
To: flr-list <flr-list at flr-project.org>
Subject: Re: [FLR-list] help with bubble plot

 

Hi,

 

I can replicate the problem now. The code in the development version of FLCore does not have this problem, although I cannot see why the changes lead to this.

 

I will update FLCore in the repository tomorrow to version 2.6.6.

 

Thanks,

 

 

Iago

 

 

---- On Mon, 19 Feb 2018 10:27:06 +0100 Alessandro Orio <alessandro.orio at slu.se> wrote ----

 

 

Hi Iago,

 

I’m having the same exact problem and I’m working on the latest version of the package and on R 3.4.

 

This is the plot of the residuals of ple4…

 

Best,

 

Ale

 

 

 

 

 

 



 

 

From: flr-list-bounces at lists.r-forge.r-project.org [mailto:flr-list-bounces at lists.r-forge.r-project.org] On Behalf Of Iago Mosqueira
Sent: 17 February 2018 16:26
To: flr-list <flr-list at flr-project.org>
Subject: Re: [FLR-list] help with bubble plot

 

Hi,

 

I am testing it with the index.res obtained from running FLXSA on ple4 and ple4.indices, which also has some NAs, and I am getting no error

 

library(FLXSA)

data(ple4)

data(ple4.indices)

 

res <- FLXSA(ple4, ple4.indices)

 

bubbles(age ~ year|qname, data = index.res(res))

 

Are you on the latest versions of the package and on R 3.4?

 

Best,

 

 

Iago

 

 

 

---- On Tue, 13 Feb 2018 16:36:43 +0100 Mikaela Bergenius <mikaela.bergenius at slu.se> wrote ----

 

Hi,

Im trying to plot the standardized residuals of my XSA using the function bubbles

bubbles(age ~ year|qname, data = index.res(xsa.results7)).

In an earlier version of R I had no problems with this plot. Now I get this error message in the plot:

 

 

The problem is that in this newest version of FL core if I have NAs in some years of my index I will not get the plot. While before I was getting only an  empty column in the years with NAs. Ca you please advice me on what to do?

Thank you!

 

Mikaela

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