[FLR-list] a4a 'SCA'

[Iago Mosqueira]

Hi,

Can you try reinstalling? Fla4a is still 1.0.0, but FLCore should be 
2/.6.0.20161214. In Ubuntu 14.04, R 3.3.2, I get

catch.n       : [ 10 52 1 1 1 1 ], units =  NA
 > library(FLa4a)
 > mod02 <- FLModelSim(model=~a, params=FLPar(a=0.2))
 > m1 <- a4aM(level=mod02)
 > m1
a4aM object:
   shape: ~1
   level: ~a
   trend: ~1
 > data(ple4)
 > data(ple4.indices)
 > fit <- sca(ple4, ple4.indices)
summary(fit)
 > summary(fit)
An object of class "a4aFit"

Name: Plaice in IV
Description: Imported from a VPA file. ( N:\Projecten\ICES WG\Demersale 
werkgroep WGNSS [...]
Quant: age
Dims:  age      year    unit    season  area    iter
         10      52      1       1       1       1

Range:  min     max     pgroup  minyear maxyear minfbar maxfbar
         1       10      10      1957    2008    2       6

stock.n       : [ 10 52 1 1 1 1 ], units =  NA
harvest       : [ 10 52 1 1 1 1 ], units =  f
catch.n       : [ 10 52 1 1 1 1 ], units =  NA

Cheers,


Iago


On 22/12/16 17:07, Mathieu Lundy wrote:
> Folks,
> I was wondering if anyone had experience of basic package error with Fla4a
> when using the SCA family of functions. I think this might relate to a
> 32bit vs 64 bit compile?? but I'm not sure. I'm using FLcore
> (2.6.0.020161214) and Fla4a (1.0.0) in R.3.3.2 on 32bit Unbuntu 16.04.
>
> Some functions in the Fla4a run but with SCA I return errors. Any hints on
> where I might solve this would be greatly appreciated.
>
> Thanks
> Mat
>
>
>
>> mod02 <- FLModelSim(model=~a, params=FLPar(a=0.2))
>
>> m1 <- a4aM(level=mod02)
>
>> m1
>
> a4aM object:
>
>   shape: ~1
>
>   level: ~a
>
>   trend: ~1
>
>
>
>
>> data(ple4)
>
>> data(ple4.indices)
>
>> fit <- sca(ple4, ple4.indices)
>
>
>
>
>
> ~R/i686-pc-linux-gnu-library/3.3/FLa4a/bin/linux/a4a: 1:
>
>
> ~R/i686-pc-linux-gnu-library/3.3/FLa4a/bin/linux/a4a: ELF: not found
>
>
>
>
>
> ~R/i686-pc-linux-gnu-library/3.3/FLa4a/bin/linux/a4a: 1:
>
>
> ~R/i686-pc-linux-gnu-library/3.3/FLa4a/bin/linux/a4a:
> /lib64/ld-linux-x86-64.so.2GNUGNU��p�O ,+�J1��~��: not found
>
>
>
>
>
> ~R/i686-pc-linux-gnu-library/3.3/FLa4a/bin/linux/a4a: 1:
>
>
>
>
>
> ~R/i686-pc-linux-gnu-library/3.3/FLa4a/bin/linux/a4a:
> �����������������������s�:: not found
>
>
>
>
>
> ~i686-pc-linux-gnu-library/3.3/FLa4a/bin/linux/a4a: 1:
>
>
> ~R/i686-pc-linux-gnu-library/3.3/FLa4a/bin/linux/a4a: : not found
>
>
> ~R/i686-pc-linux-gnu-library/3.3/FLa4a/bin/linux/a4a: 1:
>
>
> ~R/i686-pc-linux-gnu-library/3.3/FLa4a/bin/linux/a4a:
>
>
> ~R/i686-pc-linux-gnu-library/3.3/FLa4a/bin/linux/a4a: 1:
>
>
> ~R/i686-pc-linux-gnu-library/3.3/FLa4a/bin/linux/a4a: h2: not found
>
>
> h2: not found
>
>
> ~R/i686-pc-linux-gnu-library/3.3/FLa4a/bin/linux/a4a: 1:
>
>
> ~R/i686-pc-linux-gnu-library/3.3/FLa4a/bin/linux/a4a: TT at T
> @DDP�td0X0XW0XWLuLuQ�tdR�tdh2h2: not found
>
>
> ~R/i686-pc-linux-gnu-library/3.3/FLa4a/bin/linux/a4a: 1:
>
>
> ~R/i686-pc-linux-gnu-library/3.3/FLa4a/bin/linux/a4a: �=: not found
>
>
> ~R/i686-pc-linux-gnu-library/3.3/FLa4a/bin/linux/a4a: 2:
>
>
> ~R/i686-pc-linux-gnu-library/3.3/FLa4a/bin/linux/a4a: Syntax error: ")"
> unexpected
>
>
>
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