[FLR-list] Error in a4aout at harvest + m(stock) : non-conformable arrays

[Iago Mosqueira]

That's right, stock goes from 4-21 but one index goes 2-12

gul.indices[[2]] <- gul.indices[[2]][-c(1,2),]

Those 2 ages need to be dropped, I think.


Iago

On 18/02/2015 11:21, Luis Ridao wrote:
> Hi,
>
> It seems that one one the tunning fleets has a wider age range than 
> the the stock object:
>
> > gul.indices[[1]]@range
>       min       max plusgroup   minyear   maxyear    startf endf
>         6        13        13      1998      2014 0         1
> > gul.indices[[2]]@range
>       min       max plusgroup   minyear   maxyear    startf endf
>       2.0      12.0      12.0    1996.0    2014.0       0.6 0.7
> > gul at range
>       min       max plusgroup   minyear   maxyear   minfbar maxfbar
>         4        21        21      1995      2014         6 11
>
> best,
> Luis
>
> On 02/17/2015 05:12 PM, Ernesto Jardim wrote:
>>
>> hi
>>
>> I'm away. Can't replicate ... I had this one before. It's something 
>> with data.  Check if index has more ages or years than stock.
>>
>> best
>>
>> EJ
>>
>> No dia 17 de Fev de 2015 17:10, "Luis Ridao" <luisr at hav.fo 
>> <mailto:luisr at hav.fo>> escreveu:
>>
>>     Hi all,
>>
>>     Giving "a4a" package a try.
>>     I have FLStock and FLIndices objects:
>>
>>     > class(gul0001)
>>     [1] "FLStock"
>>     attr(,"package")
>>     [1] "FLCore"
>>
>>     > class(gul.indices)
>>     [1] "FLIndices"
>>     attr(,"package")
>>     [1] "FLCore"
>>     >
>>
>>     The harvest slot is "NAs":
>>
>>     > dim(harvest(gul0001))
>>     [1] 18 20  1  1  1  1
>>
>>     and M slot (M=0.1)
>>
>>     > dim(m(gul0001))
>>     [1] 18 20  1  1  1  1
>>
>>     But when performing a model run an error comes up:
>>
>>     > gulfit <- sca(gul0001, gul.indices)
>>     Error in a4aout at harvest + m(stock) : non-conformable arrays
>>
>>
>>     Any ideas?
>>
>>     Thanks in advance
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-- 
Dr Iago Mosqueira

European Commission – Joint Research Center
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