[FLR-list] Missing SR relationships

[Mark Payne]

Is it in the repo now? I'll try it out in the next week or so...

Mark
________________________________________
Fra: flr-list-bounces at r-forge.wu-wien.ac.at [flr-list-bounces at r-forge.wu-wien.ac.at] på vegne af Iago MOSQUEIRA (JRC) [iago.mosqueira-sanchez at jrc.ec.europa.eu]
Sendt: 14. maj 2013 23:07
Til: flr-list at flr-project.org
Emne: Re: [FLR-list] Missing SR relationships

A quick test with nsher shows it working

data(nsher)
model(nsher)<-rickerAR1

nshe<-fmle(nsher)

There was a bug in the call to return in the initial function for
rickerAR1 but it appears to have been fixed


Iago


On 05/14/2013 11:02 PM, Iago MOSQUEIRA (JRC) wrote:
>
> Hi,
>
> Right now the help needs updating. Is RickerAR1 still failing for you?
>
>
> Iago
>
> On 05/14/2013 04:12 PM, Mark Payne wrote:
>> Has this been fixed in a more recent build e.g. on the repo? Is there
>> any reason why is there is discrepancy between the SRR functions
>> described in the help files and those that are actually available?
>>
>> Mark
>>
>>
>> ------------------------------------------------------------------------
>> *Fra:* flr-list-bounces at r-forge.wu-wien.ac.at
>> [flr-list-bounces at r-forge.wu-wien.ac.at] på vegne af Laurie
>> [lauriekell at googlemail.com]
>> *Sendt:* 25. april 2013 17:57
>> *Til:* flr-list at flr-project.org
>> *Emne:* Re: [FLR-list] Missing SR relationships
>>
>> Its the brackets
>>
>> return(FLPar(a = max(exp(res[1])), b = -max(res[2])*)*, rho = 0)
>>
>>
>> On 25/04/13 12:28, Mark Payne wrote:
>>> bevholtAR1 works, but not rickerAR1
>>>
>>>> model(nsher) <- rickerAR1
>>>> mdl <- fmle(nsher)
>>> Error in return(FLPar(a = max(exp(res[1])), b = -max(res[2])), rho = 0) :
>>>   multi-argument returns are not permitted
>>>
>>> But what is the difference between these functions and the ones that are documented in the help files?
>>>
>>> Here's my version info FYI - its the standard install from the repo
>>>> packageDescription("FLCore")
>>> Package: FLCore
>>> Title: Core package of FLR, fisheries modelling in R.
>>> Version: 2.4
>>> Date: 2011
>>> Packaged: 2011-10-14 12:08:14.541 UTC; imosqueira
>>> Built: R 2.14.1; i686-pc-linux-gnu; 2013-02-04 10:40:33
>>>       UTC; unix
>>>
>>> Mark
>>>
>>> ________________________________________
>>> Fra: flr-list-bounces at r-forge.wu-wien.ac.at [flr-list-bounces at r-forge.wu-wien.ac.at] på vegne af Laurie [lauriekell at googlemail.com]
>>> Sendt: 25. april 2013 12:10
>>> Til: flr-list at flr-project.org
>>> Emne: Re: [FLR-list] Missing SR relationships
>>>
>>> try
>>>
>>> bevholtAR1()
>>> rickerAR1()
>>>
>>> On 25/04/13 09:51, Mark Payne wrote:
>>>> Hi,
>>>>
>>>> I am trying to fit some stock-recruitment relationships using the FLSR classes - this is the first time that I've played with them, and I have to say, I am very impressed with what you have setup here. However, it seems that there are a few missing that should be there according to the help file. ?SRModels gives me a nice list of the available models, but when I try the classic ar1 models, I get the following errors:
>>>>
>>>>> data(nsher)
>>>>> model(nsher) <- "bevholt.ar1"
>>>> Error in do.call(value, list()) : could not find function "bevholt.ar1"
>>>>> model(nsher) <- bevholt.ar1()
>>>> Error: could not find function "bevholt.ar1"
>>>>> model(nsher) <- "ricker.ar1"
>>>> Error in do.call(value, list()) : could not find function "ricker.ar1"
>>>>> model(nsher) <- ricker.ar1()
>>>> Error: could not find function "ricker.ar1"
>>>>
>>>> Any ideas?
>>>>
>>>> Mark
>>>> _______________________________________________
>>>> flr-list mailing list
>>>> flr-list at flr-project.org
>>>> https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/flr-list
>>> _______________________________________________
>>> flr-list mailing list
>>> flr-list at flr-project.org
>>> https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/flr-list
>>> _______________________________________________
>>> flr-list mailing list
>>> flr-list at flr-project.org
>>> https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/flr-list
>>
>>
>>
>> _______________________________________________
>> flr-list mailing list
>> flr-list at flr-project.org
>> https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/flr-list
>>
>
>


--
Dr Iago Mosqueira

European Commission – Joint Research Center
Institute for the Protection and Security of the Citizen (IPSC)
Maritime Affairs Unit FISHREG – Scientific Support to Fisheries
TP 051, Via Enrico Fermi 2749
I-21027 Ispra (VA), Italy

Office : +39 0332 785413
Fax: +39 0332 789658

iago.mosqueira at jrc.ec.europa.eu

http://fishreg.jrc.ec.europa.eu/home

_______________________________________________
flr-list mailing list
flr-list at flr-project.org
https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/flr-list