From noreply at r-forge.r-project.org  Fri Mar  9 22:22:26 2018
From: noreply at r-forge.r-project.org (noreply at r-forge.r-project.org)
Date: Fri,  9 Mar 2018 22:22:26 +0100 (CET)
Subject: [Dplr-commits] r1088 - pkg/dplR/man
Message-ID: <20180309212226.74F32189405@r-forge.r-project.org>

Author: andybunn
Date: 2018-03-09 22:22:25 +0100 (Fri, 09 Mar 2018)
New Revision: 1088

Modified:
   pkg/dplR/man/read.crn.Rd
   pkg/dplR/man/read.tucson.Rd
Log:
Fixing dead URL in read.crn and read.tucson. -AB

Modified: pkg/dplR/man/read.crn.Rd
===================================================================
--- pkg/dplR/man/read.crn.Rd	2018-02-28 16:13:37 UTC (rev 1087)
+++ pkg/dplR/man/read.crn.Rd	2018-03-09 21:22:25 UTC (rev 1088)
@@ -26,7 +26,7 @@
 \details{
   This reads in a standard crn file as defined according to the
   standards of the \acronym{ITRDB} at
-  \url{http://www.ncdc.noaa.gov/paleo/treeinfo.html}.  Despite the
+  \url{http://www1.ncdc.noaa.gov/pub/data/paleo/treering/treeinfo.txt}.  Despite the
   standards at the \acronym{ITRDB}, this occasionally fails due to
   formatting problems.
 }

Modified: pkg/dplR/man/read.tucson.Rd
===================================================================
--- pkg/dplR/man/read.tucson.Rd	2018-02-28 16:13:37 UTC (rev 1087)
+++ pkg/dplR/man/read.tucson.Rd	2018-03-09 21:22:25 UTC (rev 1088)
@@ -35,7 +35,7 @@
 \details{
   This reads in a standard rwl file as defined according to the
   standards of the \acronym{ITRDB} at
-  \url{http://www.ncdc.noaa.gov/paleo/treeinfo.html}.  Despite the
+  \url{http://www1.ncdc.noaa.gov/pub/data/paleo/treering/treeinfo.txt}.  Despite the
   standards at the \acronym{ITRDB}, this occasionally fails due to
   formatting problems.
 }


From noreply at r-forge.r-project.org  Sat Mar 24 22:01:47 2018
From: noreply at r-forge.r-project.org (noreply at r-forge.r-project.org)
Date: Sat, 24 Mar 2018 22:01:47 +0100 (CET)
Subject: [Dplr-commits] r1089 - in pkg/dplR: . R vignettes
Message-ID: <20180324210147.A36011896DA@r-forge.r-project.org>

Author: andybunn
Date: 2018-03-24 22:01:46 +0100 (Sat, 24 Mar 2018)
New Revision: 1089

Modified:
   pkg/dplR/ChangeLog
   pkg/dplR/DESCRIPTION
   pkg/dplR/R/seg.plot.R
   pkg/dplR/vignettes/xdate-dplR.Rnw
Log:
Typos and minor stuff

Modified: pkg/dplR/ChangeLog
===================================================================
--- pkg/dplR/ChangeLog	2018-03-09 21:22:25 UTC (rev 1088)
+++ pkg/dplR/ChangeLog	2018-03-24 21:01:46 UTC (rev 1089)
@@ -2,6 +2,16 @@
 
 - Note that Darwin Alexander Pucha Cofrep has been added as a developer to work on plotRings() etc.
 
+File: seg.plot.R
+----------------
+
+- Fixed an issue with ylim and yaxs which should cut out extra white space.
+
+File: xdate-dplR.Rnw
+----------------
+
+- Fixed typos 
+
 * CHANGES IN dplR VERSION 1.6.7
 
 File: latexify.R

Modified: pkg/dplR/DESCRIPTION
===================================================================
--- pkg/dplR/DESCRIPTION	2018-03-09 21:22:25 UTC (rev 1088)
+++ pkg/dplR/DESCRIPTION	2018-03-24 21:01:46 UTC (rev 1089)
@@ -3,7 +3,7 @@
 Type: Package
 Title: Dendrochronology Program Library in R
 Version: 1.6.8
-Date: 2018-01-31
+Date: 2018-03-24
 Authors at R: c(person("Andy", "Bunn", role = c("aut", "cph",
         "cre", "trl"), email = "andy.bunn at wwu.edu"), person("Mikko",
         "Korpela", role = c("aut", "cph", "trl")), person("Franco", "Biondi",

Modified: pkg/dplR/R/seg.plot.R
===================================================================
--- pkg/dplR/R/seg.plot.R	2018-03-09 21:22:25 UTC (rev 1088)
+++ pkg/dplR/R/seg.plot.R	2018-03-24 21:01:46 UTC (rev 1089)
@@ -20,8 +20,8 @@
     op <- par(no.readonly=TRUE) # Save par
     on.exit(par(op))            # Reset par on exit
     par(mar=c(2, 5, 2, 5) + 0.1, mgp=c(1.1, 0.1, 0), tcl=0.5,
-        xaxs="i")
-    plot(yr, segs[[1]], type="n", ylim=c(0, n.col), axes=FALSE,
+        xaxs="i",yaxs="i")
+    plot(yr, segs[[1]], type="n", ylim=c(0, n.col+1), axes=FALSE,
          ylab="", xlab=gettext("Year", domain="R-dplR"), ...)
     abline(h=seq.col,lwd=1,col="grey")
     grid(ny = NA)

Modified: pkg/dplR/vignettes/xdate-dplR.Rnw
===================================================================
--- pkg/dplR/vignettes/xdate-dplR.Rnw	2018-03-09 21:22:25 UTC (rev 1088)
+++ pkg/dplR/vignettes/xdate-dplR.Rnw	2018-03-24 21:01:46 UTC (rev 1089)
@@ -243,10 +243,10 @@
 the dating error is between 1879 and 1889.  
 
 We have strong inference now that series \code{643114} is misdated somewhere in a ten
-year period around 1885. On final tool that dplR has is the ability to combine 
+year period around 1885. One final tool that dplR has is the ability to combine 
 the visual style of crossdating using skeleton plots with the statistical 
 approach of cross-correlation analysis. The \code{skel.ccf.plot} function does 
-just this. Here we make a skeleton plot from the 80-year period around the 
+just this. Here we make a skeleton plot from the 40-year period around the 
 suspected dating error (1885):
 
 <<f, fig=TRUE>>=