[Distr-commits] r1432 - in pkg: distrDoc distrMod distrMod/inst distrMod/man distrMod/tests/Examples utils

noreply at r-forge.r-project.org noreply at r-forge.r-project.org
Wed Jan 31 17:12:46 CET 2024


Author: ruckdeschel
Date: 2024-01-31 17:12:45 +0100 (Wed, 31 Jan 2024)
New Revision: 1432

Modified:
   pkg/distrDoc/DESCRIPTION
   pkg/distrMod/DESCRIPTION
   pkg/distrMod/inst/NEWS
   pkg/distrMod/man/internalmleHelpers.Rd
   pkg/distrMod/man/internals.Rd
   pkg/distrMod/tests/Examples/distrMod-Ex.Rout.save
   pkg/utils/DESCRIPTIONutilsExamples.R
Log:
[trunk] 
+ prepared distrMod for resubmission
+ removed Enoding: UTF-8 entry in DESCRIPTION files -- it is no longer needed

Modified: pkg/distrDoc/DESCRIPTION
===================================================================
--- pkg/distrDoc/DESCRIPTION	2024-01-30 19:10:39 UTC (rev 1431)
+++ pkg/distrDoc/DESCRIPTION	2024-01-31 16:12:45 UTC (rev 1432)
@@ -17,7 +17,6 @@
 Suggests: Biobase, knitr
 VignetteBuilder: knitr
 ByteCompile: yes
-Encoding: UTF-8
 License: LGPL-3
 URL: http://distr.r-forge.r-project.org/
 LastChangedDate: {$LastChangedDate$}

Modified: pkg/distrMod/DESCRIPTION
===================================================================
--- pkg/distrMod/DESCRIPTION	2024-01-30 19:10:39 UTC (rev 1431)
+++ pkg/distrMod/DESCRIPTION	2024-01-31 16:12:45 UTC (rev 1432)
@@ -14,7 +14,6 @@
 Enhances: RobExtremes
 ByteCompile: yes
 License: LGPL-3
-Encoding: UTF-8
 URL: http://distr.r-forge.r-project.org/
 LastChangedDate: {$LastChangedDate$}
 LastChangedRevision: {$LastChangedRevision$}

Modified: pkg/distrMod/inst/NEWS
===================================================================
--- pkg/distrMod/inst/NEWS	2024-01-30 19:10:39 UTC (rev 1431)
+++ pkg/distrMod/inst/NEWS	2024-01-31 16:12:45 UTC (rev 1432)
@@ -8,6 +8,13 @@
  information)
 
 ##############
+v 2.9.1
+##############
+bug fixes
++ fixed some documentation glitches in internal .Rd files 
+
+
+##############
 v 2.9.0
 ##############
 user-visible CHANGES:

Modified: pkg/distrMod/man/internalmleHelpers.Rd
===================================================================
--- pkg/distrMod/man/internalmleHelpers.Rd	2024-01-30 19:10:39 UTC (rev 1431)
+++ pkg/distrMod/man/internalmleHelpers.Rd	2024-01-31 16:12:45 UTC (rev 1432)
@@ -34,7 +34,7 @@
   \item{res.name}{the name of the corresponding estimator}
   \item{call}{the original call with which the estimate was produced}
   \item{asvar.fct}{a function producing an asymptotic covariance matrix or \code{NULL}.}
-  \item{validity.check}{logical: shall return parameter value be checked for
+  \item{check.validity}{logical: shall return parameter value be checked for
     validity?}
   \item{theta}{parameter vector}
   \item{idx}{indices of the main part of the component}

Modified: pkg/distrMod/man/internals.Rd
===================================================================
--- pkg/distrMod/man/internals.Rd	2024-01-30 19:10:39 UTC (rev 1431)
+++ pkg/distrMod/man/internals.Rd	2024-01-31 16:12:45 UTC (rev 1432)
@@ -8,6 +8,7 @@
 \alias{.oldCvMMDCovariance}
 \alias{.show.with.sd}
 \alias{.getLogDeriv}
+\alias{.csimpsum}
 \alias{.deleteDim}
 
 \title{Internal functions of package distrMod}

Modified: pkg/distrMod/tests/Examples/distrMod-Ex.Rout.save
===================================================================
--- pkg/distrMod/tests/Examples/distrMod-Ex.Rout.save	2024-01-30 19:10:39 UTC (rev 1431)
+++ pkg/distrMod/tests/Examples/distrMod-Ex.Rout.save	2024-01-31 16:12:45 UTC (rev 1432)
@@ -1,7 +1,7 @@
 
-R Under development (unstable) (2022-09-25 r82916 ucrt) -- "Unsuffered Consequences"
-Copyright (C) 2022 The R Foundation for Statistical Computing
-Platform: x86_64-w64-mingw32/x64 (64-bit)
+R Under development (unstable) (2024-01-25 r85826 ucrt) -- "Unsuffered Consequences"
+Copyright (C) 2024 The R Foundation for Statistical Computing
+Platform: x86_64-w64-mingw32/x64
 
 R is free software and comes with ABSOLUTELY NO WARRANTY.
 You are welcome to redistribute it under certain conditions.
@@ -31,7 +31,7 @@
 
 Loading required package: sfsmisc
 :distr>  Object Oriented Implementation of Distributions (version
-:distr>  2.9.0)
+:distr>  2.9.3)
 :distr> 
 :distr>  Attention: Arithmetics on distribution objects are
 :distr>  understood as operations on corresponding random variables
@@ -57,7 +57,7 @@
     df, qqplot, sd
 
 Loading required package: distrEx
-:distrEx>  Extensions of Package 'distr' (version 2.9.0)
+:distrEx>  Extensions of Package 'distr' (version 2.9.2)
 :distrEx> 
 :distrEx>  Note: Packages "e1071", "moments", "fBasics" should be
 :distrEx>  attached /before/ package "distrEx". See
@@ -81,11 +81,11 @@
     IQR, mad, median, var
 
 Loading required package: RandVar
-:RandVar>  Implementation of Random Variables (version 1.2.1)
+:RandVar>  Implementation of Random Variables (version 1.2.3)
 :RandVar> 
 :RandVar>  For more information see ?"RandVar", NEWS("RandVar"), as
 :RandVar>  well as
-:RandVar>    http://robast.r-forge.r-project.org/
+:RandVar>    https://r-forge.r-project.org/projects/robast/
 :RandVar>  This package also includes a vignette; try
 :RandVar>  vignette("RandVar").
 
@@ -92,7 +92,7 @@
 Loading required package: MASS
 Loading required package: stats4
 :distrMod>  Object Oriented Implementation of Probability Models
-:distrMod>  (version 2.9.0)
+:distrMod>  (version 2.9.1)
 :distrMod> 
 :distrMod>  Some functions from pkg's 'base' and 'stats' are
 :distrMod>  intentionally masked ---see distrModMASK().
@@ -422,7 +422,7 @@
         dimnames = list(nms, nms0))
     list(fval = fval0, mat = mat0)
 }
-<bytecode: 0x0000017a0f4b5578>
+<bytecode: 0x000001791e030a58>
 Trafo / derivative matrix at which estimate was produced:
        scale shape
 shape  0.000     1
@@ -623,7 +623,7 @@
         1)/c(scale = 1)
     return(y)
 }
-<environment: 0x0000017a10591d40>
+<environment: 0x0000017925f4e840>
 
 > ## IGNORE_RDIFF_BEGIN
 > checkL2deriv(E1)
@@ -797,8 +797,8 @@
 
 Slot "fct":
 function(x) QuadFormNorm(x, A = A)
-<bytecode: 0x0000017a0fa44f10>
-<environment: 0x0000017a0fa46c48>
+<bytecode: 0x0000017923225eb0>
+<environment: 0x0000017923216f98>
 
 > 
 > ## The function is currently defined as
@@ -1081,7 +1081,7 @@
         1)/c(meanlog = 1)
     return(y)
 }
-<environment: 0x0000017a0a709860>
+<environment: 0x000001792c72bbd8>
 
 > checkL2deriv(L1)
 precision of centering:	 -0.003003394 
@@ -2123,7 +2123,7 @@
     else 
         return(sqrt(colSums(x^2)))
 }
-<bytecode: 0x0000017a0818c308>
+<bytecode: 0x0000017924f3be60>
 <environment: namespace:distrMod>
 > name(EuclNorm)
 [1] "EuclideanNorm"
@@ -2157,7 +2157,7 @@
     else 
         return(sqrt(colSums(x^2)))
 }
-<bytecode: 0x0000017a0818c308>
+<bytecode: 0x0000017924f3be60>
 <environment: namespace:distrMod>
 
 > ## IGNORE_RDIFF_END
@@ -2614,8 +2614,8 @@
 
 Slot "fct":
 function(x) QuadFormNorm(x, A= A0)
-<bytecode: 0x0000017a08292700>
-<environment: 0x0000017a0f053790>
+<bytecode: 0x000001792507a5a0>
+<environment: 0x0000017927c247b8>
 
 > 
 > ## The function is currently defined as
@@ -2654,8 +2654,8 @@
 
 Slot "fct":
 function(x) QuadFormNorm(x, A = A)
-<bytecode: 0x0000017a07d886b0>
-<environment: 0x0000017a0f48d6c8>
+<bytecode: 0x0000017923037b68>
+<environment: 0x00000179279c0538>
 
 > 
 > ## The function is currently defined as
@@ -3485,7 +3485,7 @@
 > isKerAinKerB(D,ma)
 [1] FALSE
 > isKerAinKerB(ma,D)
-[1] FALSE
+[1] TRUE
 > ## IGNORE_RDIFF_END
 > 
 > 
@@ -3678,7 +3678,7 @@
     dimnames(mat) <- list(nfval, c("mean", "sd"))
     return(list(fval = fval, mat = mat))
 }
-<bytecode: 0x0000017a032a7ac8>
+<bytecode: 0x000001791f39b1e8>
 > print(param(NS), show.details = "minimal")
 An object of class "ParamWithScaleFamParameter"
 name:	location and scale
@@ -3727,7 +3727,7 @@
     dimnames(mat) <- list(nfval, c("mean", "sd"))
     return(list(fval = fval, mat = mat))
 }
-<bytecode: 0x0000017a032a7ac8>
+<bytecode: 0x000001791f39b1e8>
 Trafo / derivative matrix:
             mean         sd
 mu/sig 0.3668695 -0.3024814
@@ -3770,7 +3770,7 @@
     dimnames(mat) <- list(nfval, c("mean", "sd"))
     return(list(fval = fval, mat = mat))
 }
-<bytecode: 0x0000017a032a7ac8>
+<bytecode: 0x000001791f39b1e8>
 Trafo / derivative matrix:
          mean      sd
 mu/sig 0.3669 -0.3025
@@ -4136,7 +4136,7 @@
 > cleanEx()
 > options(digits = 7L)
 > base::cat("Time elapsed: ", proc.time() - base::get("ptime", pos = 'CheckExEnv'),"\n")
-Time elapsed:  38.53 1 40.4 NA NA 
+Time elapsed:  36.73 1.42 39.43 NA NA 
 > grDevices::dev.off()
 null device 
           1 

Modified: pkg/utils/DESCRIPTIONutilsExamples.R
===================================================================
--- pkg/utils/DESCRIPTIONutilsExamples.R	2024-01-30 19:10:39 UTC (rev 1431)
+++ pkg/utils/DESCRIPTIONutilsExamples.R	2024-01-31 16:12:45 UTC (rev 1432)
@@ -422,6 +422,7 @@
             "RandVar"="RandVar(>= 1.2.0)")
 colnames(Values) <- names(ReqRVersion0) <- Pkgs
 rownames(Values)  <- Names
+
 changeDescription(startDir = "C:/rtest/distr",names=Names,
                   pkgs=Pkgs, values=Values,ReqRVersion =ReqRVersion0,
                   ReqDistrPkgVersion =ReqDistrPkgVersion0)
@@ -438,6 +439,15 @@
                   pkgs=Pkgs, values=Values)
 updateHTMLpages(pkgNames ="distrMod", pkgVersions = "2.9.3")
 
+Pkgs <- c("distrEx")
+Names <- c("Version")    ## 20240127
+Values <- matrix(c("2.9.2"),1,length(Pkgs))
+colnames(Values) <- Pkgs
+rownames(Values)  <- Names
+changeDescription(startDir = "C:/rtest/distr",names=Names,
+                  pkgs=Pkgs, values=Values, verbose=TRUE)
+updateHTMLpages(pkgNames ="distrEx", pkgVersions = "2.9.2")
+
 Pkgs <- c("RobAStRDA")
 Names <- c("Version")    ## 20240127
 Values <- matrix(c("1.2.1"),1,length(Pkgs))
@@ -445,5 +455,83 @@
 rownames(Values)  <- Names
 changeDescription(startDir = "C:/rtest/robast",names=Names,
                   pkgs=Pkgs, values=Values)
+
+Pkgs <- c("distrSim")
+Names <- c("Version")    ## 20240127
+Values <- matrix(c("2.8.2"),1,length(Pkgs))
+colnames(Values) <- Pkgs
+rownames(Values)  <- Names
+changeDescription(startDir = "C:/rtest/distr",names=Names,
+                  pkgs=Pkgs, values=Values, verbose=TRUE)
+updateHTMLpages(pkgNames ="distrSim", pkgVersions = "2.8.2")
+
+Pkgs <- c("distrRmetrics")
+Names <- c("Version")    ## 20240127
+Values <- matrix(c("2.8.2"),1,length(Pkgs))
+colnames(Values) <- Pkgs
+rownames(Values)  <- Names
+changeDescription(startDir = "C:/rtest/distr",names=Names,
+                  pkgs=Pkgs, values=Values, verbose=TRUE)
+
+Pkgs <- c("distrTeach")
+Names <- c("Version")    ## 20240127
+Values <- matrix(c("2.9.1"),1,length(Pkgs))
+colnames(Values) <- Pkgs
+rownames(Values)  <- Names
+changeDescription(startDir = "C:/rtest/distr",names=Names,
+                  pkgs=Pkgs, values=Values, verbose=TRUE)
+updateHTMLpages(pkgNames ="distrTeach", pkgVersions = "2.9.1")
+
+Pkgs <- c("distrTEst")
+Names <- c("Version")    ## 20240127
+Values <- matrix(c("2.8.2"),1,length(Pkgs))
+colnames(Values) <- Pkgs
+rownames(Values)  <- Names
+changeDescription(startDir = "C:/rtest/distr",names=Names,
+                  pkgs=Pkgs, values=Values, verbose=TRUE)
+updateHTMLpages(pkgNames ="distrTEst", pkgVersions = "2.8.2")
+
+Pkgs <- c("distrEllipse")
+Names <- c("Version")    ## 20240127
+Values <- matrix(c("2.8.2"),1,length(Pkgs))
+colnames(Values) <- Pkgs
+rownames(Values)  <- Names
+changeDescription(startDir = "C:/rtest/distr",names=Names,
+                  pkgs=Pkgs, values=Values, verbose=TRUE)
+updateHTMLpages(pkgNames ="distrEllipse", pkgVersions = "2.8.2")
+
+Pkgs <- c("distrMod")
+Names <- c("Version")    ## 20240127
+Values <- matrix(c("2.9.1"),1,length(Pkgs))
+colnames(Values) <- Pkgs
+rownames(Values)  <- Names
+changeDescription(startDir = "C:/rtest/distr",names=Names,
+                  pkgs=Pkgs, values=Values, verbose=TRUE)
+updateHTMLpages(pkgNames ="distrMod", pkgVersions = "2.9.1")
+
+Pkgs <- c("distrDoc")
+Names <- c("Version")    ## 20240127
+Values <- matrix(c("2.8.2"),1,length(Pkgs))
+colnames(Values) <- Pkgs
+rownames(Values)  <- Names
+changeDescription(startDir = "C:/rtest/distr",names=Names,
+                  pkgs=Pkgs, values=Values, verbose=TRUE)
+updateHTMLpages(pkgNames ="distrDoc", pkgVersions = "2.8.2")
+
+Pkgs <- c("RobAStRDA")
+Names <- c("Version")    ## 20240127
+Values <- matrix(c("1.2.1"),1,length(Pkgs))
+colnames(Values) <- Pkgs
+rownames(Values)  <- Names
+changeDescription(startDir = "C:/rtest/robast",names=Names,
+                  pkgs=Pkgs, values=Values)
+
+Pkgs <- c("RandVar")
+Names <- c("Version")    ## 20240127
+Values <- matrix(c("1.2.3"),1,length(Pkgs))
+colnames(Values) <- Pkgs
+rownames(Values)  <- Names
+changeDescription(startDir = "C:/rtest/robast",names=Names,
+                  pkgs=Pkgs, values=Values)
 }
 



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