[Distr-commits] r836 - in branches: . distr-2.5 distr-2.5/pkg distr-2.5/pkg/Mail distr-2.5/pkg/SweaveListingUtils distr-2.5/pkg/SweaveListingUtils/R distr-2.5/pkg/SweaveListingUtils/inst distr-2.5/pkg/SweaveListingUtils/inst/TeX distr-2.5/pkg/SweaveListingUtils/inst/doc distr-2.5/pkg/SweaveListingUtils/inst/try distr-2.5/pkg/SweaveListingUtils/man distr-2.5/pkg/SweaveListingUtils/tests distr-2.5/pkg/SweaveListingUtils/tests/Examples distr-2.5/pkg/SweaveListingUtils/vignettes distr-2.5/pkg/distr distr-2.5/pkg/distr/R distr-2.5/pkg/distr/demo distr-2.5/pkg/distr/inst distr-2.5/pkg/distr/inst/doc distr-2.5/pkg/distr/man distr-2.5/pkg/distr/tests distr-2.5/pkg/distr/tests/Examples distr-2.5/pkg/distr/vignettes distr-2.5/pkg/distrDoc distr-2.5/pkg/distrDoc/R distr-2.5/pkg/distrDoc/inst distr-2.5/pkg/distrDoc/inst/doc distr-2.5/pkg/distrDoc/man distr-2.5/pkg/distrDoc/vignettes distr-2.5/pkg/distrEllipse distr-2.5/pkg/distrEllipse/R distr-2.5/pkg/distrEllipse/inst distr-2.5/pkg/distrEllipse/man distr-2.5/pkg/distrEllipse/tests distr-2.5/pkg/distrEllipse/tests/Examples distr-2.5/pkg/distrEx distr-2.5/pkg/distrEx/R distr-2.5/pkg/distrEx/demo distr-2.5/pkg/distrEx/inst distr-2.5/pkg/distrEx/inst/tests distr-2.5/pkg/distrEx/man distr-2.5/pkg/distrEx/src distr-2.5/pkg/distrEx/tests distr-2.5/pkg/distrEx/tests/Examples distr-2.5/pkg/distrMod distr-2.5/pkg/distrMod/R distr-2.5/pkg/distrMod/demo distr-2.5/pkg/distrMod/inst distr-2.5/pkg/distrMod/inst/doc distr-2.5/pkg/distrMod/inst/scripts distr-2.5/pkg/distrMod/man distr-2.5/pkg/distrMod/tests distr-2.5/pkg/distrMod/tests/Examples distr-2.5/pkg/distrMod/vignettes distr-2.5/pkg/distrRmetrics distr-2.5/pkg/distrRmetrics/R distr-2.5/pkg/distrRmetrics/inst distr-2.5/pkg/distrSim distr-2.5/pkg/distrSim/R distr-2.5/pkg/distrSim/demo distr-2.5/pkg/distrSim/inst distr-2.5/pkg/distrSim/man distr-2.5/pkg/distrSim/tests distr-2.5/pkg/distrSim/tests/Examples distr-2.5/pkg/distrTEst distr-2.5/pkg/distrTEst/R distr-2.5/pkg/distrTEst/demo distr-2.5/pkg/distrTEst/inst distr-2.5/pkg/distrTEst/man distr-2.5/pkg/distrTEst/tests distr-2.5/pkg/distrTEst/tests/Examples distr-2.5/pkg/distrTeach distr-2.5/pkg/distrTeach/R distr-2.5/pkg/distrTeach/demo distr-2.5/pkg/distrTeach/inst distr-2.5/pkg/distrTeach/man distr-2.5/pkg/distrTeach/tests distr-2.5/pkg/distrTeach/tests/Examples distr-2.5/pkg/startupmsg distr-2.5/pkg/startupmsg/R distr-2.5/pkg/startupmsg/inst distr-2.5/pkg/startupmsg/man distr-2.5/pkg/startupmsg/tests distr-2.5/pkg/startupmsg/tests/Examples distr-2.5/pkg/utils distr-2.5/www
noreply at r-forge.r-project.org
noreply at r-forge.r-project.org
Wed Jan 9 01:39:29 CET 2013
Author: ruckdeschel
Date: 2013-01-09 01:39:27 +0100 (Wed, 09 Jan 2013)
New Revision: 836
Added:
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branches/distr-2.5/README
branches/distr-2.5/pkg/
branches/distr-2.5/pkg/Mail/
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+-----------------------------------------------------------------------
+This is the repository of your project. It contains two important
+pre-defined directories namely 'www' and 'pkg'. They must not be
+deleted otherwise R-Forge's core functionality will not be available
+(daily check and build of your package or project websites).
+These two directories are standardized and therefore are going to be
+described in this README. The rest of your repository can be used as
+you like.
+
+3. 'pkg' directory
+-----------------------------------------------------------------------
+Typically this directory contains the R package with the usual
+DESCRIPTION and R/, man/, data/ directories etc (see 'Writing R
+Extension' for more details). In the future it will also be possible to
+have multiple packages managed by a control file, however currently
+this feature is still under development).
+
+Furthermore, this directory will be checked out daily, the package is
+checked and if it passes this procedure it is build and made available at
+http://R-Forge.R-project.org/src/contrib/ (as source tar.gz and win32
+.zip). It should be possible to install the package via
+install.packages("foo",url="R-Forge.R-project.org") within R
+then.
+
+4. 'www' directory
+-----------------------------------------------------------------------
+This directory contains your project homepage which is available at
+http://<projectname>.R-Forge.R-project.org.
+Note that it will be checked out daily, so please take
+into consideration that it will not be available right after you
+commit your changes or updates.
+
+5. Help
+-----------------------------------------------------------------------
+If you need help don't hesitate to contact us
+(R-Forge at R-project.org)
Added: branches/distr-2.5/pkg/Mail/New versions for the distr-family of packages and of package startupmsg.txt
===================================================================
--- branches/distr-2.5/pkg/Mail/New versions for the distr-family of packages and of package startupmsg.txt (rev 0)
+++ branches/distr-2.5/pkg/Mail/New versions for the distr-family of packages and of package startupmsg.txt 2013-01-09 00:39:27 UTC (rev 836)
@@ -0,0 +1,122 @@
+#########################################################################################
+# To r-packages:
+#########################################################################################
+
+SUBJECT:: New versions for the distr-family of packages and of package startupmsg
+
+We would like to announce the availability on CRAN of new versions
+of our packages in the "distrXXX"-family (version 1.9),
+i.e.; "distr", "distrEx", "distrSim", "distrTEst", and "distrDoc"
+as well as of package for managing startup messages, "startupmsg" (0.5).
+[all of them require R >= 2.2.0]
+-----------------------------------------------------------------------------------------
+********************************* Changes ***********************************************
+of "distr" (1.9), "distrEx" (1.9), "distrSim" (1.9), "distrTEst" (1.9), "distrDoc" (1.9)
+*****************************************************************************************
+-----------------------------------------------------------------------------------------
+There are major changes / in "distr" and "distrEx" from this release on;
+the more important ones can be inspected at
+
+http://www.uni-bayreuth.de/departments/math/org/mathe7/DISTR
+
+and the pages linked to on this page.
+
+Special thanks go to Spencer Graves for spotting some errors in 1.8 (which
+should be fixed by now) and to G.Jay Kerns for detecting some further bugs
+and providing code for exact kurtosis and skewness functionals.
+
+After package installation you may also have a look
+at NEWS("<pkg-name>") for all the packages mentioned in this mail.
+
+-----------------------------------------------------------------------------------------
+********************************* Changes ***********************************************
+of "startupmsg" (0.5)
+*****************************************************************************************
+-----------------------------------------------------------------------------------------
+This may be interesting to those annoyed by our "chatty" startup messages ;-)
+
+-> From this version on, you may use suppressPackageStartupMessages() to suppress the
+ startup-messages issued by our packages---
+compare http://tolstoy.newcastle.edu.au/R/e2/devel/07/04/3039.html
+
+-----------------------------------------------------------------------------------------
+Short Descriptions
+-----------------------------------------------------------------------------------------
+************ "distr":
+"distr" is to provide a conceptual treatment of random variables
+(r.v.'s) by means of S4--classes. A virtual mother class "Distribution"
+is introduced.
+All distributions of the "stats" package are implemented as subclasses of
+either "AbscontDistribution" or "DiscreteDistribution".
+
+Using these classes, we also provide (default) methods to automatically
+generate the image distributions under unary mathematical operations as
+well as a general convolution algorithm.
+-----------------------------------------------------------------------------------------
+************ "distrSim":
+Classes and methods are provided for a standardized treatment of
+simulations (also under contaminations) .
+-----------------------------------------------------------------------------------------
+************ "distrTEst":
+Classes and methods are provided for a standardized treatment of
+the evaluation of statistical procedures (up to now only estimators)
+at data/simulations
+-----------------------------------------------------------------------------------------
+************ "distrEx":
+This package provides some extensions to package "distr" like:
+* extreme value distribution classes,
+* expectations
++in the form E(X) for the expectation of X where X is some
+distribution or
++in the form E(X,f) for the expectation of f(X) where X is
+some distribution and f some function in X,
+* further functionals: var, sd, IQR, mad, median, kurtosis, skewness
+* truncated moments
+* distances between distributions
+(Hellinger, Kolmogorov, total variation, "convex contamination")
+* conditional distributions in factorized form
+* conditional expectations in factorized form
+-----------------------------------------------------------------------------------------
+************ "distrDoc":
+"distrDoc" provides a common vignette to the distrXXX family
+-----------------------------------------------------------------------------------------
+************ "startupmsg":
+provides utilities for start-up messages for packages
+-----------------------------------------------------------------------------------------
+
+We look forward to receiving questions, comments and suggestions
+
+Peter Ruckdeschel
+Matthias Kohl
+Thomas Stabla
+Florian Camphausen
+
+###########################################################################################
+# To Greg Snow
+###########################################################################################
+
+SUBJECT: Opinion on distr/distrEx packages
+
+Dear Greg,
+
+we have been working with your TeachingDemo package in our courses
+for a while now and find it very useful. Thank you for providing it.
+
+As you may know we are working on S4 classes for distributions and
+in this framework have made available the distrXXX familiy of packages.
+
+In the latest version (1.9) uploaded to CRAN recently, we, too, have
+implemented two little demos that might be used in teaching:
+
+illustCLT[_tcl] (illustration for the CLT)
+illustLLN (illustration for the LLN),
+
+respectively functions illustrateCLT and illustrateLLN.
+In both cases you may use arbitrary summand distributions (using our
+S4 classes).
+
+We would be interested in what you think of these demos.
+Would you have any suggestions for enhancements?
+
+Best,
+Peter, Matthias, Thomas, Florian
Added: branches/distr-2.5/pkg/Mail/new_versions_packages_distr-distrEx-distrSim-distrTEst.txt
===================================================================
--- branches/distr-2.5/pkg/Mail/new_versions_packages_distr-distrEx-distrSim-distrTEst.txt (rev 0)
+++ branches/distr-2.5/pkg/Mail/new_versions_packages_distr-distrEx-distrSim-distrTEst.txt 2013-01-09 00:39:27 UTC (rev 836)
@@ -0,0 +1,225 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN">
+<html>
+<head>
+ <meta content="text/html;charset=ISO-8859-1" http-equiv="Content-Type">
+ <title>new versions of packages "distr", "distrEx", "distrSim",
+"distrTEst"; new package "startupmsg"</title>
+</head>
+<body bgcolor="#ffffff" text="#000000">
+<meta content="text/html;charset=ISO-8859-1" http-equiv="Content-Type">
+<title></title>
+<meta content="text/html;charset=ISO-8859-1" http-equiv="Content-Type">
+<title></title>
+<pre>We would like to announce the availability on CRAN of a new versions
+of our packages "distr", "distrEx", "distrSim", "distrTEst", as well <br>as a new package "startupmsg"<br><br>-----------------------------------------------------------------------------------------<br>************ new package "startupmsg" *****************<br>-----------------------------------------------------------------------------------------<br><br>### startupmsg -- v0.2 <br><br>Utilities for start-up messages for packages:<br><br>provides: <br><br>+functions: to display a NEWS file (if existing) and tags from the <br> DESCRIPTION file of a package <br><br>+conditions: a new sub-condition to 'message' (with a 'types' slot) <br> is introduced, allowing for scalable startup messages by <br> condition "catchers" muffleMessage() [for StartupMessage], <br> onlytypeMessage(), and custom() <br><br>additionally: <br>+ buildStartupMessage: automatically generates a 'complete' start-up message including <br> *a start-up message of type "version" as to the version information.<br> *a start-up message of type "notabene" (optionally)<br> *a start-up message of "information" mentioning<br> -?"<pkg-name>", <br> -NEWS("<pkg-name>"), if there is a \file{NEWS} file, <br> -the URL tag of the package DESCRIPTION file, (if existing), <br> -a file / a URL to a manual (optional)<br>(to be called in the .onAttach() / .First.lib() function of a package)<br><br><br>+ takes up thread "Wishlist: 'quietly' argument for .onAttach() / .First.lib()"<br> on r-devel, April 2006, more precisely:<br> Brian Ripley: https://stat.ethz.ch/pipermail/r-devel/2006-April/037281.html<br> Andy Liaw: https://stat.ethz.ch/pipermail/r-devel/2006-April/037286.html<br> Seth Falcon: https://stat.ethz.ch/pipermail/r-devel/2006-April/037317.html<br> and https://stat.ethz.ch/pipermail/r-devel/2006-April/037367.html<br><br> also compare https://stat.ethz.ch/pipermail/r-devel/2006-April/037382.html<br><br>-----------------------------------------------------------------------------------------
+************ Changes *****************
+-----------------------------------------------------------------------------------------
+
+### distr -- v1.7
+Changes from 1.6 to 1.7
+
++ taking up a suggestion by Martin Maechler, we now issue warnings as to the
+ intepretation of arithmetics applied to distributions, as well as to the
+ accuracy of slots p,d,q filled by means of simulations;
+ these warnings are issued at two places:
+ (1) on attaching the package
+ (2) at every show/print of a distribution
++ (2) can be cancelled by switching off a corresponding global option
+ in distroptions() (see ?distroptions)
++ distroptions() now behaves like options --- also compare mail
+ "Re: [Rd] How to implement package-specific options?" by Brian Ripley on
+ r-devel, <span
+ id="date">Fri 09 Dec 2005 - 11:52:46, see</span>
+ <a
+ class="moz-txt-link-freetext"
+ href="http://tolstoy.newcastle.edu.au/R/devel/05/12/3408.html">http://tolstoy.newcastle.edu.au/R/devel/05/12/3408.html</a>
++ all specific distributions (those realized as [r|d|p|q]<name> like rnorm in stats)
+ now have valid prototypes
++ fixed arguments xlim and ylim for plot(signature("AbscontDistribution"
+ or "DiscreteDistribution")) thus: plot(Cauchy(),xlim=c(-4,4)) gives
+ reasonable result (and plot(Cauchy()) does not)
++ Internationalization: use of <span
+ style="color: rgb(51, 102, 255);">gettext</span>, <span
+ style="color: rgb(51, 102, 255);">gettextf</span> for <span
+ style="color: rgb(51, 102, 255);">output
++ </span>explicitly implemented <span
+ style="color: rgb(51, 102, 255);">is()</span> relations: R "knows" that:
+ * an Exponential(lambda) distribution also is
+ a Weibull(shape =1, scale = 1/lambda) distribution,
+ as well as a Gamma(shape = 1, scale = 1/lambda) distribution
+ * a Geometric(p) distribution also is
+ a Negativ Binomial(size = 1,p) distribution
+ * a Uniform(0,1) distribution also is a Beta(1,1) distribution
+ * a Cauchy(0,1) distribution also is a T(df=1, ncp=0) distribution
+ * a Chisq(df=n, ncp=0) distribution also is a Gamma(shape=n/2,scale=2) distribution
++ noncentrality parameter included for Beta, T, F distribution </pre>
+<pre wrap="">### distrEx -- v0.4-3
+Changes from 0.4-2 to 0.4-3
+
+* Implementation of functionals:
++ evaluation of exact expressions of E (expectation functional)
+ for most specific distributions
++ var, sd methods for UnivariateDistributions: these include calls like
+ N <- Norm()
+ var(N,function(t)abs(t)^(1/2)) # calculates Var[|N|^(1/2)]
+ also (factorized) conditional variance is available
++ evaluation of exact expressions of var for most specific distributions
++ median, IQR, mad methods for UnivariateDistributions
++ for var, sd, median, IQR, mad:
+ *all* functionality/arguments of stats methods is/are preserved and
+ only if first argument / argument x is of class UnivariateDistribution
+ (or descendant) a different method is applied
+* Demos are included
++ an illustration of the use of these functionals in programming
++ an illustration of the (iid-setup)-CLT (for [almost] arbitrary summand distribution)
++ a deconvolution expample: let X and E be independet univariate random variables with
+ [almost] arbitrary, given absolsutely continuous distributions. We generate the
+ (factorized) conditional distribution of X given X+E=y.
++ Internationalization: use of gettext, gettextf in output
++ C-interface .GLaw() to replace respective R-Code in distrExintegrate.R
++ exact formula for E, Var for Fd (with ncp) and Td (with ncp)
+
+
+### distrSim -- v1.7
+Changes from 1.6 to 1.7
+
++ the (new) Namespace of setRNG by Paul Gilbert is imported
+
+### distrTEst -- v1.7
+Changes from 1.6 to 1.7
+
++ "..." included into evaluate
+
+some more details to be found at
+<a class="moz-txt-link-freetext"
+ href="http://www.uni-bayreuth.de/departments/math/org/mathe7/DISTR">http://www.uni-bayreuth.de/departments/math/org/mathe7/DISTR</a>
+and a more detailed manual is available at
+<a class="moz-txt-link-freetext"
+ href="http://www.uni-bayreuth.de/departments/math/org/mathe7/DISTR/distr.pdf">http://www.uni-bayreuth.de/departments/math/org/mathe7/DISTR/distr.pdf</a>
+
+-----------------------------------------------------------------------------------------
+Short Descriptions
+-----------------------------------------------------------------------------------------
+Short Description of "distr":
+"distr" is to provide a conceptual treatment of random variables
+(r.v.'s) by means of S4--classes. A virtual mother class "Distribution"
+is introduced.
+All distributions of the "base" package are implemented as subclasses of
+either "AbscontDistribution" or "DiscreteDistribution".
+
+Using these classes, we also provide (default) methods to automatically
+generate the image distributions under unary mathematical operations as
+well as a general convolution algorithm.
+-----------------------------------------------------------------------------------------
+Short Description of "distrSim":
+Classes and methods are provided for a standardized treatment of
+simulations (also under contaminations) .
+-----------------------------------------------------------------------------------------
+Short Description of "distrTEst":
+Classes and methods are provided for a standardized treatment of
+the evaluation of statistical procedures (up to now only estimators)
+at data/simulations
+-----------------------------------------------------------------------------------------
+Short Description of "distrEx":
+This package provides some extensions to package "distr"
+like:
+* extreme value distribution classes,
+*expectations
+ +in the form E(X) for the expectation of X where X is some
+ distribution or
+ +in the form E(X,f) for the expectation of f(X) where X is
+ some distribution and f some function in X,
+* further functionals: var, sd, IQR, mad, median
+* truncated moments,
+* distances between distributions
+ (Hellinger, Kolmogorov, total variation, "convex contamination")
+* lists of distributions,
+* conditional distributions in factorized form
+* conditional expectations in factorized form
+-----------------------------------------------------------------------------------------
+We look forward to receiving questions, comments and suggestions
+
+Peter Ruckdeschel
+Matthias Kohl
+Thomas Stabla
+Florian Camphausen
+<br>-----------------------------------------------------------------------------------------
+DESCRIPTIONS
+-----------------------------------------------------------------------------------------
+Package: startupmsg<br>Version: 0.3<br>Date: 2006-04-30<br>Title: Utilities for start-up messages<br>Description: Utilities for start-up messages<br>Author: Peter Ruckdeschel<br>Maintainer: Peter Ruckdeschel <Peter.Ruckdeschel at uni-bayreuth.de><br>Depends: R(>= 2.2.0)<br>SaveImage: no<br>LazyLoad: yes<br>License: GPL (version 2 or later)<br>-----------------------------------------------------------------------------------------<br>Package: distr<br>Version: 1.7<br>Date: 2006-04-30<br>Title: distr<br>Authors: Peter Ruckdeschel <a
+ class="moz-txt-link-rfc2396E"
+ href="mailto:peter.ruckdeschel at uni-bayreuth.de"><peter.ruckdeschel at uni-bayreuth.de></a>,<br>Matthias Kohl <a
+ class="moz-txt-link-rfc2396E"
+ href="mailto:matthias.kohl at uni-bayreuth.de"><matthias.kohl@</a><a
+ class="moz-txt-link-rfc2396E"
+ href="mailto:matthias.kohl at uni-bayreuth.de">stamats</a><a
+ class="moz-txt-link-rfc2396E"
+ href="mailto:matthias.kohl at uni-bayreuth.de">.de></a>,<br>Thomas Stabla <a
+ class="moz-txt-link-rfc2396E" href="mailto:statho3 at web.de"><statho3 at web.de></a>,<br>Florian Camphausen <a
+ class="moz-txt-link-rfc2396E" href="mailto:fcampi at gmx.de"><fcampi at gmx.de></a>
+Maintainer: Peter Ruckdeschel <a
+ class="moz-txt-link-rfc2396E"
+ href="mailto:peter.ruckdeschel at uni-bayreuth.de"><peter.ruckdeschel at uni-bayreuth.de></a>
+Description: S4 Classes for Distributions
+Depends: R (>= 2.2.0), (versions for <=2.2.0, on URL cited below), startupmsg
+License: GPL version 2 or later
+URL: <a
+ class="moz-txt-link-freetext"
+ href="http://www.uni-bayreuth.de/departments/math/org/mathe7/DISTR/">http://www.uni-bayreuth.de/departments/math/org/mathe7/DISTR/</a>
+Reference:
+<a class="moz-txt-link-freetext"
+ href="http://www.uni-bayreuth.de/departments/math/org/mathe7/DISTR/distr.pdf">http://www.uni-bayreuth.de/departments/math/org/mathe7/DISTR/distr.pdf</a><br>-----------------------------------------------------------------------------------------<br>Package: distrSim<br>Version: 1.7<br>Date: 2006-04-30<br>Title: Simulation classes based on package distr<br>Depends: R(>= 2.2.0), methods, graphics, setRNG(>= 2006.2-1),<br> distr(>= 1.7), startupmsg<br>Imports: stats<br>Authors: Peter Ruckdeschel <a
+ class="moz-txt-link-rfc2396E"
+ href="mailto:peter.ruckdeschel at uni-bayreuth.de"><peter.ruckdeschel at uni-bayreuth.de></a>,<br>Matthias Kohl <a
+ class="moz-txt-link-rfc2396E"
+ href="mailto:matthias.kohl at uni-bayreuth.de"><matthias.kohl@</a><a
+ class="moz-txt-link-rfc2396E"
+ href="mailto:matthias.kohl at uni-bayreuth.de">stamats</a><a
+ class="moz-txt-link-rfc2396E"
+ href="mailto:matthias.kohl at uni-bayreuth.de">.de></a>,<br>Thomas Stabla <a
+ class="moz-txt-link-rfc2396E" href="mailto:statho3 at web.de"><statho3 at web.de></a>,<br>Florian Camphausen <a
+ class="moz-txt-link-rfc2396E" href="mailto:fcampi at gmx.de"><fcampi at gmx.de></a>
+Description: Simulation (S4-)classes based on package distr
+Maintainer: Peter Ruckdeschel <a
+ class="moz-txt-link-rfc2396E"
+ href="mailto:Peter.Ruckdeschel at uni-bayreuth.de"><Peter.Ruckdeschel at uni-bayreuth.de></a>
+License: GPL (version 2 or later)
+URL: <a
+ class="moz-txt-link-freetext"
+ href="http://www.uni-bayreuth.de/departments/math/org/mathe7/DISTR/">http://www.uni-bayreuth.de/departments/math/org/mathe7/DISTR/</a>
+Reference:
+<a class="moz-txt-link-freetext"
+ href="http://www.uni-bayreuth.de/departments/math/org/mathe7/DISTR/distr.pdf">http://www.uni-bayreuth.de/departments/math/org/mathe7/DISTR/distr.pdf</a><br>-----------------------------------------------------------------------------------------<br>Package: distrTEst<br>Version: 1.7<br>Date: 2006-04-30<br>Title: Estimation and Testing classes based on package distr<br>Depends: R(>= 2.2.0), methods, graphics, setRNG(>= 2006.2-1), <br> distr(>= 1.7), distrSim(>= 1.7), startupmsg<br>Imports: stats<br>Authors: Peter Ruckdeschel <a
+ class="moz-txt-link-rfc2396E"
+ href="mailto:peter.ruckdeschel at uni-bayreuth.de"><peter.ruckdeschel at uni-bayreuth.de></a>,<br>Matthias Kohl <a
+ class="moz-txt-link-rfc2396E"
+ href="mailto:matthias.kohl at uni-bayreuth.de"><matthias.kohl at stamats.de></a>,<br>Thomas Stabla <a
+ class="moz-txt-link-rfc2396E" href="mailto:statho3 at web.de"><statho3 at web.de></a>,<br>Florian Camphausen <a
+ class="moz-txt-link-rfc2396E" href="mailto:fcampi at gmx.de"><fcampi at gmx.de></a>
+Description: Evaluation (S4-)classes based on package distr for
+evaluating procedures (estimators/tests) at data/simulation in
+a unified way.
+Maintainer: Peter Ruckdeschel <a
+ class="moz-txt-link-rfc2396E"
+ href="mailto:Peter.Ruckdeschel at uni-bayreuth.de"><Peter.Ruckdeschel at uni-bayreuth.de></a>
+License: GPL (version 2 or later)
+URL: <a
+ class="moz-txt-link-freetext"
+ href="http://www.uni-bayreuth.de/departments/math/org/mathe7/DISTR/">http://www.uni-bayreuth.de/departments/math/org/mathe7/DISTR/</a>
+Reference:
+<a class="moz-txt-link-freetext"
+ href="http://www.uni-bayreuth.de/departments/math/org/mathe7/DISTR/distr.pdf">http://www.uni-bayreuth.de/departments/math/org/mathe7/DISTR/distr.pdf</a><br>-----------------------------------------------------------------------------------------<br>Package: distrEx<br>Version: 0-4.3<br>Date: 2006-04-30<br>Title: Extensions of package distr<br>Description: Extensions of package distr and some additional functionality<br>Depends: R(>= 2.0.1), methods, distr(>= 1.7), evd, startupmsg<br>Authors: Matthias Kohl <a
+ class="moz-txt-link-rfc2396E" href="mailto:Matthias.Kohl at stamats.de"><Matthias.Kohl at stamats.de>,</a>
+Peter Ruckdeschel <a
+ class="moz-txt-link-rfc2396E"
+ href="mailto:peter.ruckdeschel at uni-bayreuth.de"><peter.ruckdeschel at uni-bayreuth.de></a>
+Maintainer: Matthias Kohl <a
+ class="moz-txt-link-rfc2396E" href="mailto:Matthias.Kohl at stamats.de"><Matthias.Kohl at stamats.de></a>
+License: GPL (version 2 or later)
+URL: <a
+ class="moz-txt-link-freetext"
+ href="http://www.uni-bayreuth.de/departments/math/org/mathe7/DISTR/">http://www.uni-bayreuth.de/departments/math/org/mathe7/DISTR/</a>
+Reference: <a
+ class="moz-txt-link-freetext" href="http://stamats.de/ThesisMKohl.pdf">http://stamats.de/ThesisMKohl.pdf</a> , App. D<br>-----------------------------------------------------------------------------------------<br><br></pre>
+</body>
+</html>
Added: branches/distr-2.5/pkg/SweaveListingUtils/.Rbuildignore
===================================================================
--- branches/distr-2.5/pkg/SweaveListingUtils/.Rbuildignore (rev 0)
+++ branches/distr-2.5/pkg/SweaveListingUtils/.Rbuildignore 2013-01-09 00:39:27 UTC (rev 836)
@@ -0,0 +1 @@
+^.*\.svn.+
Added: branches/distr-2.5/pkg/SweaveListingUtils/DESCRIPTION
===================================================================
--- branches/distr-2.5/pkg/SweaveListingUtils/DESCRIPTION (rev 0)
+++ branches/distr-2.5/pkg/SweaveListingUtils/DESCRIPTION 2013-01-09 00:39:27 UTC (rev 836)
@@ -0,0 +1,17 @@
+Package: SweaveListingUtils
+Title: Utilities for Sweave together with TeX listings package
+Encoding: latin1
+Version: 0.6
+Depends: R(>= 2.10.0), startupmsg
+Suggests: distr, MASS, survival, distrEx, Matrix, splines
+Imports: stats
+ByteCompile: yes
+Author: Peter Ruckdeschel
+Description: provides utilities for defining R / Rd as Tex-package-listings "language" and including R / Rd source file (sniplets) copied from R-forge in its most
+ recent version (or another url) thereby avoiding inconsistencies between vignette and documented source code
+Maintainer: Peter Ruckdeschel <Peter.Ruckdeschel at itwm.fraunhofer.de>
+License: LGPL-3
+Date: 2013-01-09
+LastChangedDate: {$LastChangedDate: 2013-01-09 00:32:51 +0100 (Mi, 09 Jan 2013) $}
+LastChangedRevision: {$LastChangedRevision: 835 $}
+SVNRevision: 834
Added: branches/distr-2.5/pkg/SweaveListingUtils/NAMESPACE
===================================================================
--- branches/distr-2.5/pkg/SweaveListingUtils/NAMESPACE (rev 0)
+++ branches/distr-2.5/pkg/SweaveListingUtils/NAMESPACE 2013-01-09 00:39:27 UTC (rev 836)
@@ -0,0 +1,12 @@
+import("startupmsg")
+export("taglist", "lstset", "lstsetR", "lstsetRd",
+ "lstsetRin", "lstsetRout", "lstsetRcode",
+ "lstdefRstyle", "lstsetRall",
+ "SweaveListingPreparations", "readSourceFromRForge",
+ "copySourceFromRForge", "lstinputSourceFromRForge",
+ "readPkgVersion", "SweaveListingOptions",
+ "SweaveListingoptions", "getSweaveListingOption",
+ "SweaveListingMASK", "setToBeDefinedPkgs","lstsetLanguage",
+ "changeKeywordstyles", "library", "require",
+ "isBaseOrRecommended", "setBaseOrRecommended")
+S3method(print, taglist)
\ No newline at end of file
Added: branches/distr-2.5/pkg/SweaveListingUtils/R/SweaveListingOptions.R
===================================================================
--- branches/distr-2.5/pkg/SweaveListingUtils/R/SweaveListingOptions.R (rev 0)
+++ branches/distr-2.5/pkg/SweaveListingUtils/R/SweaveListingOptions.R 2013-01-09 00:39:27 UTC (rev 836)
@@ -0,0 +1,86 @@
+### default settings
+.CacheLength <- 0
+.CacheFiles <- NULL
+.alreadyDefinedPkgs <- NULL
+.tobeDefinedPkgs <- NULL
+.numberofRstyleDefs <- NULL
+
+.SweaveListingOptions <- list(
+Rset = list("fancyvrb" = "true", "escapechar" = "`",
+ "extendedchars" = "false",
+ "language" = "R", "basicstyle" = "{\\color{Rcolor}\\small}",
+ "keywordstyle" = "{\\bf\\color{Rcolor}}",
+ "commentstyle" = "{\\color{Rcommentcolor}\\ttfamily\\itshape}",
+ "literate" = paste("{\"}{\\texttt{\"}}1",
+ "{<-}{{$\\leftarrow$}}2",
+ "{<<-}{{$\\twoheadleftarrow$}}2",#"%\n",
+ "{~}{{$\\sim$}}1", "{<=}{{$\\leq$}}2",#"%\n",
+ "{>=}{{$\\geq$}}2", "{^}{{$\\scriptstyle\\wedge$}}1", sep=""),
+ ## ~,^,<=, >= as suggested by Frank Harrell
+ "alsoother" = "{$}", "alsoletter" = "{.<-}",
+ "otherkeywords" = "{!,!=,~,$,*,\\&,\\%/\\%,\\%*\\%,\\%\\%,<-,<<-,/}",
+ "escapeinside" = "{(*}{*)}" ## as suggested by Frank Harrell
+ ),
+Rdset = list("fancyvrb" = "true", "language" = "Rd",
+ "keywordstyle" = "{\\bf}",
+ "basicstyle" = "{\\color{black}\\footnotesize}",
+ "commentstyle" = "{\\ttfamily\\itshape}",
+ "alsolanguage" = "R"),
+Rin = list("style" = "Rstyle", "fancyvrb" = "true",
+ "basicstyle" = "\\color{Rcolor}\\small"),
+Rout = list("fancyvrb" = "false", "basicstyle" = "\\color{Routcolor}\\small"),
+Rcode = list("style" = "Rstyle", "fancyvrb" = "true",
+ "fontshape"= "sl", "basicstyle" = "\\color{Rcolor}"),
+Rcolor = c(0,0.5,0.5),
+RRecomdcolor = c(0,0.6,0.4),
+Rbcolor = c(0,0.6,0.6),
+Routcolor = c(0.461,0.039,0.102),
+Rcommentcolor = c(0.101,0.043,0.432),
+pkv = "2.1.4",
+pkg = "distr",
+Keywordstyle = "{\\bf}",
+Recomd.Keywordstyle = "{\\bf\\color{RRecomdcolor}}",
+interm.Keywordstyle = "{\\bf\\color{Rbcolor}}",
+overwrite = FALSE,
+intermediate = TRUE,
+inSweave = FALSE,
+fromRForge = TRUE,
+base.url = paste("http://r-forge.r-project.org/scm/viewvc.php/",
+ "*checkout*/pkg/",
+ sep = ""),
+addRset = TRUE,
+addRdset = TRUE,
+addRinset = TRUE,
+addRoutset = TRUE,
+addRcodeset = TRUE,
+fileCommand = "\\def\\file#1{{\\tt #1}}",
+pkgCommand = "\\def\\pkg#1{{\\tt \"#1\"}}"
+)
+
+SweaveListingOptions <- function(...) {
+ if (nargs() == 0) return(.SweaveListingOptions)
+ current <- .SweaveListingOptions
+ temp <- list(...)
+ if (length(temp) == 1 && is.null(names(temp))) {
+ arg <- temp[[1]]
+ switch(mode(arg),
+ list = temp <- arg,
+ character = return(.SweaveListingOptions[arg]),
+ stop("invalid argument: ", sQuote(arg)))
+ }
+ if (length(temp) == 0) return(current)
+ n <- names(temp)
+ if (is.null(n)) stop("options must be given by name")
+ changed <- current[n]
+ current[n] <- temp
+# if (sys.parent() == 0)
+ env <- asNamespace("SweaveListingUtils")
+# else
+# env <- parent.frame()
+ assign(".SweaveListingOptions", current, envir = env)
+
+ invisible(current)
+}
+
+getSweaveListingOption <- function(x) SweaveListingOptions(x)[[1]]
+SweaveListingoptions <- SweaveListingOptions
Added: branches/distr-2.5/pkg/SweaveListingUtils/R/SweaveListingUtils.R
===================================================================
--- branches/distr-2.5/pkg/SweaveListingUtils/R/SweaveListingUtils.R (rev 0)
+++ branches/distr-2.5/pkg/SweaveListingUtils/R/SweaveListingUtils.R 2013-01-09 00:39:27 UTC (rev 836)
@@ -0,0 +1,379 @@
+###############################################################################
+# some R helpers for Sweave / listings
+# will be included into some package some day...
+#
+###############################################################################
+
+# .onLoad<-function(lib,pkg){require(methods)}
+
+.onAttach <- function(library, pkg)
+{
+# if (is.null(library))
+# library <- .libPaths()
+
+ unlockBinding(".keywordsR", asNamespace("SweaveListingUtils"))
+ unlockBinding(".alreadyDefinedPkgs", asNamespace("SweaveListingUtils"))
+ unlockBinding(".numberofRstyleDefs", asNamespace("SweaveListingUtils"))
+ unlockBinding(".tobeDefinedPkgs", asNamespace("SweaveListingUtils"))
+ unlockBinding(".CacheFiles", asNamespace("SweaveListingUtils"))
+ unlockBinding(".CacheLength", asNamespace("SweaveListingUtils"))
+ unlockBinding(".SweaveListingOptions", asNamespace("SweaveListingUtils"))
+ msga <- gettext(
+ "NOTE: Support for this package will stop soon.\nPackage 'knitr' is providing the same functionality in a better way.\n"
+ )
+ msgb <- gettext(
+ "Some functions from package 'base' are intentionally masked ---see SweaveListingMASK().\n"
+ )
+ msgc <- gettext(
+ "Note that global options are controlled by SweaveListingoptions() ---c.f. ?\"SweaveListingoptions\"."
+ )
+
+ buildStartupMessage(pkg = "SweaveListingUtils", msga, msgb, msgc,
+ library = library, packageHelp = TRUE,
+ VIGNETTE = gettext(
+"There is a vignette to this package; try vignette(\"ExampleSweaveListingUtils\")."
+ )
+ )
+
+ invisible()
+}
+
+SweaveListingMASK <- function(library = NULL)
+{
[TRUNCATED]
To get the complete diff run:
svnlook diff /svnroot/distr -r 836
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