[Distr-commits] r883 - in pkg/SweaveListingUtils: . tests/Examples
noreply at r-forge.r-project.org
noreply at r-forge.r-project.org
Sat Feb 9 23:12:40 CET 2013
Author: ruckdeschel
Date: 2013-02-09 23:12:39 +0100 (Sat, 09 Feb 2013)
New Revision: 883
Modified:
pkg/SweaveListingUtils/DESCRIPTION
pkg/SweaveListingUtils/tests/Examples/SweaveListingUtils-Ex.Rout.save
Log:
changed Rout.save according to wishes of BDR
Modified: pkg/SweaveListingUtils/DESCRIPTION
===================================================================
--- pkg/SweaveListingUtils/DESCRIPTION 2013-02-08 21:59:56 UTC (rev 882)
+++ pkg/SweaveListingUtils/DESCRIPTION 2013-02-09 22:12:39 UTC (rev 883)
@@ -13,7 +13,7 @@
source code
Maintainer: Peter Ruckdeschel <Peter.Ruckdeschel at itwm.fraunhofer.de>
License: LGPL-3
-Date: 2013-02-08
+Date: 2013-02-09
LastChangedDate: {$LastChangedDate$}
LastChangedRevision: {$LastChangedRevision$}
-SVNRevision: 881
+SVNRevision: 882
Modified: pkg/SweaveListingUtils/tests/Examples/SweaveListingUtils-Ex.Rout.save
===================================================================
--- pkg/SweaveListingUtils/tests/Examples/SweaveListingUtils-Ex.Rout.save 2013-02-08 21:59:56 UTC (rev 882)
+++ pkg/SweaveListingUtils/tests/Examples/SweaveListingUtils-Ex.Rout.save 2013-02-09 22:12:39 UTC (rev 883)
@@ -1,93 +1,84 @@
-
-R Under development (unstable) (2013-01-09 r61595) -- "Unsuffered Consequences"
-Copyright (C) 2013 The R Foundation for Statistical Computing
-ISBN 3-900051-07-0
-Platform: x86_64-unknown-linux-gnu (64-bit)
-
-R is free software and comes with ABSOLUTELY NO WARRANTY.
-You are welcome to redistribute it under certain conditions.
-Type 'license()' or 'licence()' for distribution details.
-
- Natural language support but running in an English locale
-
-R is a collaborative project with many contributors.
-Type 'contributors()' for more information and
-'citation()' on how to cite R or R packages in publications.
-
-Type 'demo()' for some demos, 'help()' for on-line help, or
-'help.start()' for an HTML browser interface to help.
-Type 'q()' to quit R.
-
-> pkgname <- "SweaveListingUtils"
-> source(file.path(R.home("share"), "R", "examples-header.R"))
-> options(warn = 1)
-> library('SweaveListingUtils')
-Loading required package: startupmsg
-:startupmsg> Utilities for start-up messages (version 0.8)
-:startupmsg>
-:startupmsg> For more information see ?"startupmsg",
-:startupmsg> NEWS("startupmsg")
-
-:SweaveListingUtils> Utilities for Sweave together with
-:SweaveListingUtils> TeX listings package (version 0.6)
-:SweaveListingUtils>
-:SweaveListingUtils> NOTE: Support for this package
-:SweaveListingUtils> will stop soon.
-:SweaveListingUtils>
-:SweaveListingUtils> Package 'knitr' is providing the
-:SweaveListingUtils> same functionality in a better
-:SweaveListingUtils> way.
-:SweaveListingUtils>
-:SweaveListingUtils> Some functions from package 'base'
-:SweaveListingUtils> are intentionally masked ---see
-:SweaveListingUtils> SweaveListingMASK().
-:SweaveListingUtils>
-:SweaveListingUtils> Note that global options are
-:SweaveListingUtils> controlled by
-:SweaveListingUtils> SweaveListingoptions() ---c.f.
-:SweaveListingUtils> ?"SweaveListingoptions".
-:SweaveListingUtils>
-:SweaveListingUtils> For more information see
-:SweaveListingUtils> ?"SweaveListingUtils",
-:SweaveListingUtils> NEWS("SweaveListingUtils")
-:SweaveListingUtils> There is a vignette to this
-:SweaveListingUtils> package; try
-:SweaveListingUtils> vignette("ExampleSweaveListingUtils").
-
-
-Attaching package: ‘SweaveListingUtils’
-
-The following object is masked from ‘package:base’:
-
- library, require
-
->
-> assign(".oldSearch", search(), pos = 'CheckExEnv')
-> assign(".ExTimings", "SweaveListingUtils-Ex.timings", pos = 'CheckExEnv')
-> cat("name\tuser\tsystem\telapsed\n", file=get(".ExTimings", pos = 'CheckExEnv'))
-> assign(".format_ptime",
-+ function(x) {
-+ if(!is.na(x[4L])) x[1L] <- x[1L] + x[4L]
-+ if(!is.na(x[5L])) x[2L] <- x[2L] + x[5L]
-+ format(x[1L:3L])
-+ },
-+ pos = 'CheckExEnv')
->
-> cleanEx()
-> nameEx("SweaveListingMASK")
-> ### * SweaveListingMASK
->
-> flush(stderr()); flush(stdout())
->
-> assign(".ptime", proc.time(), pos = "CheckExEnv")
-> ### Name: SweaveListingMASK
-> ### Title: Masking of/by other functions in package "SweaveListingUtils"
-> ### Aliases: SweaveListingMASK MASKING
-> ### Keywords: programming documentation
->
-> ### ** Examples
->
-> SweaveListingMASK()
+
+R Under development (unstable) (2013-01-05 r61562) -- "Unsuffered Consequences"
+Copyright (C) 2013 The R Foundation for Statistical Computing
+ISBN 3-900051-07-0
+Platform: i386-w64-mingw32/i386 (32-bit)
+
+R is free software and comes with ABSOLUTELY NO WARRANTY.
+You are welcome to redistribute it under certain conditions.
+Type 'license()' or 'licence()' for distribution details.
+
+ Natural language support but running in an English locale
+
+R is a collaborative project with many contributors.
+Type 'contributors()' for more information and
+'citation()' on how to cite R or R packages in publications.
+
+Type 'demo()' for some demos, 'help()' for on-line help, or
+'help.start()' for an HTML browser interface to help.
+Type 'q()' to quit R.
+
+> pkgname <- "SweaveListingUtils"
+> source(file.path(R.home("share"), "R", "examples-header.R"))
+> options(warn = 1)
+> options(pager = "console")
+> library('SweaveListingUtils')
+Loading required package: startupmsg
+:startupmsg> Utilities for start-up messages (version 0.8)
+:startupmsg>
+:startupmsg> For more information see ?"startupmsg",
+:startupmsg> NEWS("startupmsg")
+
+:SweaveListingUtils> Utilities for Sweave together with
+:SweaveListingUtils> TeX listings package (version
+:SweaveListingUtils> 0.6.1)
+:SweaveListingUtils>
+:SweaveListingUtils> NOTE: Support for this package
+:SweaveListingUtils> will stop soon.
+:SweaveListingUtils>
+:SweaveListingUtils> Package 'knitr' is providing the
+:SweaveListingUtils> same functionality in a better
+:SweaveListingUtils> way.
+:SweaveListingUtils>
+:SweaveListingUtils> Some functions from package 'base'
+:SweaveListingUtils> are intentionally masked ---see
+:SweaveListingUtils> SweaveListingMASK().
+:SweaveListingUtils>
+:SweaveListingUtils> Note that global options are
+:SweaveListingUtils> controlled by
+:SweaveListingUtils> SweaveListingoptions() ---c.f.
+:SweaveListingUtils> ?"SweaveListingoptions".
+:SweaveListingUtils>
+:SweaveListingUtils> For more information see
+:SweaveListingUtils> ?"SweaveListingUtils",
+:SweaveListingUtils> NEWS("SweaveListingUtils")
+:SweaveListingUtils> There is a vignette to this
+:SweaveListingUtils> package; try
+:SweaveListingUtils> vignette("ExampleSweaveListingUtils").
+
+
+Attaching package: 'SweaveListingUtils'
+
+The following object is masked from 'package:base':
+
+ library, require
+
+>
+> assign(".oldSearch", search(), pos = 'CheckExEnv')
+> cleanEx()
+> nameEx("SweaveListingMASK")
+> ### * SweaveListingMASK
+>
+> flush(stderr()); flush(stdout())
+>
+> ### Name: SweaveListingMASK
+> ### Title: Masking of/by other functions in package "SweaveListingUtils"
+> ### Aliases: SweaveListingMASK MASKING
+> ### Keywords: programming documentation
+>
+> ### ** Examples
+>
+> SweaveListingMASK()
######################################################################
# On masking of and by other functions in package "SweaveListingUtils"
######################################################################
@@ -116,3291 +107,3242 @@
*** non-intentional masking: ***
-... nothing discovered so far ...
->
->
->
->
-> assign(".dptime", (proc.time() - get(".ptime", pos = "CheckExEnv")), pos = "CheckExEnv")
-> cat("SweaveListingMASK", get(".format_ptime", pos = 'CheckExEnv')(get(".dptime", pos = "CheckExEnv")), "\n", file=get(".ExTimings", pos = 'CheckExEnv'), append=TRUE, sep="\t")
-> cleanEx()
-> nameEx("SweaveListingOptions")
-> ### * SweaveListingOptions
->
-> flush(stderr()); flush(stdout())
->
-> assign(".ptime", proc.time(), pos = "CheckExEnv")
-> ### Name: SweaveListingOptions
-> ### Title: Function to change the global options of the package
-> ### 'SweaveListingUtils'
-> ### Aliases: SweaveListingOptions SweaveListingoptions
-> ### getSweaveListingOption Rset Rdset Rin Rout Rcode Rcolor Rbcolor
-> ### Routcolor RRecomdcolor Rcommentcolor pkg pkv Keywordstyle
-> ### Recomd.Keywordstyle interm.Keywordstyle intermediate overwrite
-> ### inSweave fromRForge base.url addRset addRdset fileCommand pkgCommand
-> ### Keywords: misc utilities
->
-> ### ** Examples
->
-> SweaveListingOptions()
-$Rset
-$Rset$fancyvrb
-[1] "true"
-
-$Rset$escapechar
-[1] "`"
-
-$Rset$extendedchars
-[1] "false"
-
-$Rset$language
-[1] "R"
-
-$Rset$basicstyle
-[1] "{\\color{Rcolor}\\small}"
-
-$Rset$keywordstyle
-[1] "{\\bf\\color{Rcolor}}"
-
-$Rset$commentstyle
-[1] "{\\color{Rcommentcolor}\\ttfamily\\itshape}"
-
-$Rset$literate
-[1] "{\"}{\\texttt{\"}}1{<-}{{$\\leftarrow$}}2{<<-}{{$\\twoheadleftarrow$}}2{~}{{$\\sim$}}1{<=}{{$\\leq$}}2{>=}{{$\\geq$}}2{^}{{$\\scriptstyle\\wedge$}}1"
-
-$Rset$alsoother
-[1] "{$}"
-
-$Rset$alsoletter
-[1] "{.<-}"
-
-$Rset$otherkeywords
-[1] "{!,!=,~,$,*,\\&,\\%/\\%,\\%*\\%,\\%\\%,<-,<<-,/}"
-
-$Rset$escapeinside
-[1] "{(*}{*)}"
-
-
-$Rdset
-$Rdset$fancyvrb
-[1] "true"
-
-$Rdset$language
-[1] "Rd"
-
-$Rdset$keywordstyle
-[1] "{\\bf}"
-
-$Rdset$basicstyle
-[1] "{\\color{black}\\footnotesize}"
-
-$Rdset$commentstyle
-[1] "{\\ttfamily\\itshape}"
-
-$Rdset$alsolanguage
-[1] "R"
-
-
-$Rin
-$Rin$style
-[1] "Rstyle"
-
-$Rin$fancyvrb
-[1] "true"
-
-$Rin$basicstyle
-[1] "\\color{Rcolor}\\small"
-
-
-$Rout
-$Rout$fancyvrb
-[1] "false"
-
-$Rout$basicstyle
-[1] "\\color{Routcolor}\\small"
-
-
-$Rcode
-$Rcode$style
-[1] "Rstyle"
-
-$Rcode$fancyvrb
-[1] "true"
-
-$Rcode$fontshape
-[1] "sl"
-
-$Rcode$basicstyle
-[1] "\\color{Rcolor}"
-
-
-$Rcolor
-[1] 0.0 0.5 0.5
-
-$RRecomdcolor
-[1] 0.0 0.6 0.4
-
-$Rbcolor
-[1] 0.0 0.6 0.6
-
-$Routcolor
-[1] 0.461 0.039 0.102
-
-$Rcommentcolor
-[1] 0.101 0.043 0.432
-
-$pkv
-[1] "2.1.4"
-
-$pkg
-[1] "distr"
-
-$Keywordstyle
-[1] "{\\bf}"
-
-$Recomd.Keywordstyle
-[1] "{\\bf\\color{RRecomdcolor}}"
-
-$interm.Keywordstyle
-[1] "{\\bf\\color{Rbcolor}}"
-
-$overwrite
-[1] FALSE
-
-$intermediate
-[1] TRUE
-
-$inSweave
-[1] FALSE
-
-$fromRForge
-[1] TRUE
-
-$base.url
-[1] "http://r-forge.r-project.org/scm/viewvc.php/*checkout*/pkg/"
-
-$addRset
-[1] TRUE
-
-$addRdset
-[1] TRUE
-
-$addRinset
-[1] TRUE
-
-$addRoutset
-[1] TRUE
-
-$addRcodeset
-[1] TRUE
-
-$fileCommand
-[1] "\\def\\file#1{{\\tt #1}}"
-
-$pkgCommand
-[1] "\\def\\pkg#1{{\\tt \"#1\"}}"
-
-> SweaveListingOptions("Rout")
-$Rout
-$Rout$fancyvrb
-[1] "false"
-
-$Rout$basicstyle
-[1] "\\color{Routcolor}\\small"
-
-
-> SweaveListingOptions("Rout" = c(0,0,0))
-> # or
-> SweaveListingOptions(Rout = c(0,1,0))
-> getSweaveListingOption("Rout")
-[1] 0 1 0
->
->
->
->
-> assign(".dptime", (proc.time() - get(".ptime", pos = "CheckExEnv")), pos = "CheckExEnv")
-> cat("SweaveListingOptions", get(".format_ptime", pos = 'CheckExEnv')(get(".dptime", pos = "CheckExEnv")), "\n", file=get(".ExTimings", pos = 'CheckExEnv'), append=TRUE, sep="\t")
-> cleanEx()
-> nameEx("SweaveListingPreparations")
-> ### * SweaveListingPreparations
->
-> flush(stderr()); flush(stdout())
->
-> assign(".ptime", proc.time(), pos = "CheckExEnv")
-> ### Name: SweaveListingPreparations
-> ### Title: SweaveListingPreparations
-> ### Aliases: SweaveListingPreparations
-> ### Keywords: utilities
->
-> ### ** Examples
->
-> SweaveListingPreparations()
-%------------------------------------------------------------------------------%
-%Preparations for Sweave and Listings
-%------------------------------------------------------------------------------%
-%
-\RequirePackage{color}
-\definecolor{Rcolor}{rgb}{0, 0.5, 0.5}
-\definecolor{RRecomdcolor}{rgb}{0, 0.6, 0.4}
-\definecolor{Rbcolor}{rgb}{0, 0.6, 0.6}
-\definecolor{Routcolor}{rgb}{0.461, 0.039, 0.102}
-\definecolor{Rcommentcolor}{rgb}{0.101, 0.043, 0.432}
-%------------------------------------------------------------------------------%
-\lstdefinelanguage{Rd}[common]{TeX}%
-{moretexcs={acronym,alias,arguments,author,bold,cite,%
- code,command,concept,cr,deqn,describe,%
- description,details,dfn,doctype,dots,%
- dontrun,dontshow,donttest,dQuote,%
- email,emph,enc,encoding,enumerate,env,eqn,%
- examples,file,format,if,ifelse,item,itemize,kbd,keyword,%
- ldots,link,linkS4class,method,name,note,%
- option,out,pkg,preformatted,R,Rdopts,Rdversion,%
- references,S3method,S4method,Sexpr,samp,section,%
- seealso,source,sp,special,sQuote,strong,%
- subsection,synopsis,tab,tabular,testonly,%
- title,url,usage,value,var,verb},
- sensitive=true,%
- morecomment=[l]\%% 2008/9 Peter Ruckdeschel
-}[keywords,comments]%%
-%------------------------------------------------------------------------------%
-
-%----------------
-\lstdefinestyle{RstyleO1}{fancyvrb=true,escapechar=`,extendedchars=false,%
- language=R,%
- basicstyle={\color{Rcolor}\small},%
- keywordstyle={\bf\color{Rcolor}},%Warning in print.taglist(taglist, LineLength = LineLength, offset.start = nchar(startS), :
- Some elements of taglist are too long
-
- commentstyle={\color{Rcommentcolor}\ttfamily\itshape},%
- literate={"}{\texttt{"}}1{<-}{{$\leftarrow$}}2{<<-}{{$\twoheadleftarrow$}}2{~}{{$\sim$}}1{<=}{{$\leq$}}2{>=}{{$\geq$}}2{^}{{$\scriptstyle\wedge$}}1,%
- alsoother={$},%
- alsoletter={.<-},%
- otherkeywords={!,!=,~,$,*,\&,\%/\%,\%*\%,\%\%,<-,<<-,/},%
- escapeinside={(*}{*)}}%
-%----------------
-\lstdefinestyle{Rstyle}{style=RstyleO1}
-
-%----------------
-\lstdefinestyle{Rdstyle}{fancyvrb=true,language=Rd,keywordstyle={\bf},%
- basicstyle={\color{black}\footnotesize},%
- commentstyle={\ttfamily\itshape},%
- alsolanguage=R}%
-%----------------
-%------------------------------------------------------------------------------%
-\global\def\Rlstset{\lstset{style=Rstyle}}%
-\global\def\Rdlstset{\lstset{style=Rdstyle}}%
-%------------------------------------------------------------------------------%
-\global\def\Rinlstset{\lstset{style=Rinstyle}}%
-\global\def\Routlstset{\lstset{style=Routstyle}}%
-\global\def\Rcodelstset{\lstset{style=Rcodestyle}}%
-%------------------------------------------------------------------------------%
-\Rlstset
-%------------------------------------------------------------------------------%
-%copying relevant parts of Sweave.sty
-%------------------------------------------------------------------------------%
-%
-\RequirePackage{graphicx,fancyvrb}%
-\IfFileExists{upquote.sty}{\RequirePackage{upquote}}{}%
-
-\RequirePackage{ifthen}%
-\newboolean{Sweave at gin}%
-\setboolean{Sweave at gin}{true}%
-\setkeys{Gin}{width=0.8\textwidth}%
-\newboolean{Sweave at ae}
-\setboolean{Sweave at ae}{true}%
-\RequirePackage[T1]{fontenc}
-\RequirePackage{ae}
-%
-\newenvironment{Schunk}{}{}
-
-\newcommand{\Sconcordance}[1]{%
-\ifx\pdfoutput\undefined%
-\csname newcount\endcsname\pdfoutput\fi%
-\ifcase\pdfoutput\special{#1}%
-\else\immediate\pdfobj{#1}\fi}
-
-%------------------------------------------------------------------------------%
-% ---- end of parts of Sweave.sty
-%------------------------------------------------------------------------------%
-%
-% ---- input
-\lstdefinestyle{RinstyleO}{style=Rstyle,fancyvrb=true,%
- basicstyle=\color{Rcolor}\small}%
-\lstdefinestyle{Rinstyle}{style=RinstyleO}
-\lstnewenvironment{Sinput}{\Rinlstset}{\Rlstset}
-%
-% ---- output
-\lstdefinestyle{RoutstyleO}{
-V1=0,V2=1,V3=0}%
-\lstdefinestyle{Routstyle}{style=RoutstyleO}
-\lstnewenvironment{Soutput}{\Routlstset}{\Rlstset}
-%
-% ---- code
-\lstdefinestyle{RcodestyleO}{style=Rstyle,fancyvrb=true,fontshape=sl,%
- basicstyle=\color{Rcolor}}%
-\lstdefinestyle{Rcodestyle}{style=RcodestyleO}
-\lstnewenvironment{Scode}{\Rcodelstset}{\Rlstset}
-%
-%------------------------------------------------------------------------------%
-\let\code\lstinline
-\def\Code#1{{\tt\color{Rcolor} #1}}
-\def\file#1{{\tt #1}}
-\def\pkg#1{{\tt "#1"}}
-\newcommand{\pkgversion}{{\tt 2.4}}
-%------------------------------------------------------------------------------%
-Warning in setBaseOrRecommended(pkgs = pkgs) :
- number of items to replace is not a multiple of replacement length
-
-\lstdefinestyle{RstyleO2}{style=RstyleO1,%
-% --------------------------
-% Registration of package SweaveListingUtils
-% --------------------------
-morekeywords={[2]taglist,setToBeDefinedPkgs,setBaseOrRecommended,readSourceFromRForge,readPkgVersion,%
-lstsetRout,lstsetRin,lstsetRd,lstsetRcode,lstsetRall,%
-lstsetR,lstsetLanguage,lstset,lstinputSourceFromRForge,lstdefRstyle,%
-isBaseOrRecommended,getSweaveListingOption,copySourceFromRForge,changeKeywordstyles,SweaveListingoptions,%
-SweaveListingPreparations,SweaveListingOptions,SweaveListingMASK%
-},%
-keywordstyle={[2]{\bf}},%
-%
-% --------------------------
-% Registration of package startupmsg
-% --------------------------
-morekeywords={[3]suppressStartupMessages,startupType,startupPackage,startupMessage,startupEndline,%
-readVersionInformation,readURLInformation,pointertoNEWS,onlytypeStartupMessages,mystartupMessage,%
-mySMHandler,infoShow,buildStartupMessage,TOBEDONE,StartupMessage,%
-NEWS%
-},%
-keywordstyle={[3]{\bf}},%
-%
-% --------------------------
-% Registration of package stats [recommended or base]
-% --------------------------
-morekeywords={[4]xtabs,write.ftable,window<-,wilcox.test,weighted.residuals,%
-weighted.mean,vcov,varimax,variable.names,var.test,%
-update.formula,update.default,tsp<-,tsdiag,tsSmooth,%
-ts.union,ts.plot,ts.intersect,toeplitz,terms.terms,%
-terms.formula,terms.default,terms.aovlist,termplot,t.test,%
-supsmu,summary.stepfun,summary.mlm,summary.manova,summary.lm,%
-summary.infl,summary.glm,summary.aovlist,summary.aov,stl,%
-stepfun,stat.anova,splinefunH,spectrum,spec.taper,%
-spec.pgram,spec.ar,sortedXyData,smoothEnds,smooth.spline,%
-smooth,simulate,shapiro.test,setNames,selfStart,%
-se.contrast,screeplot,scatter.smooth,runmed,rstudent.lm,%
-rstudent.glm,rstandard.lm,rstandard.glm,rmultinom,residuals.lm,%
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-prop.test,promax,printCoefmat,print.ts,print.terms,%
-print.logLik,print.lm,print.integrate,print.infl,print.glm,%
-print.ftable,print.formula,print.family,print.density,print.anova,%
-princomp,predict.poly,predict.mlm,predict.lm,predict.glm,%
-prcomp,ppr,power.t.test,power.prop.test,power.anova.test,%
-polym,poisson.test,plot.ts,plot.stepfun,plot.spec.phase,%
-plot.spec.coherency,plot.spec,plot.mlm,plot.lm,plot.ecdf,%
-plot.density,plot.TukeyHSD,plclust,pbirthday,pairwise.wilcox.test,%
-pairwise.table,pairwise.t.test,pairwise.prop.test,pacf,p.adjust.methods,%
-p.adjust,order.dendrogram,optimHess,oneway.test,numericDeriv,%
-nobs,nls.control,nls,nlminb,naresid,%
-naprint,napredict,na.pass,na.omit,na.fail,%
-na.exclude,na.contiguous,na.action,mood.test,monthplot,%
-model.weights,model.tables,model.response,model.offset,model.matrix.lm,%
-model.matrix.default,model.matrix,model.frame.lm,model.frame.glm,model.frame.default,%
-model.frame.aovlist,model.frame,model.extract,medpolish,median.default,%
-mcnemar.test,mauchly.test,mantelhaen.test,manova,makepredictcall,%
-makeARIMA,make.link,ls.print,ls.diag,logLik,%
-loess.smooth,loess.control,loess,loadings,lm.wfit,%
-lm.influence,lm.fit,lines.ts,line,lag.plot,%
-lag,ksmooth,ks.test,kruskal.test,knots,%
-kmeans,kernel,kernapply,isoreg,is.tskernel,%
-is.ts,is.stepfun,is.mts,is.leaf,is.empty.model,%
-inverse.gaussian,interaction.plot,integrate,influence.measures,heatmap,%
-hclust,hatvalues.lm,hatvalues,glm.fit,glm.control,%
-get_all_vars,getInitial,getCall,friedman.test,fligner.test,%
-fitted.values,fisher.test,filter,factor.scope,factanal,%
-expand.model.frame,estVar,embed,eff.aovlist,ecdf,%
-dummy.coef,drop.terms,drop.scope,dmultinom,dist,%
-diffinv,diff.ts,dfbeta,df.residual,df.kernel,%
-deriv3.formula,deriv3.default,deriv3,deriv.formula,deriv.default,%
-density.default,dendrapply,delete.response,decompose,cutree,%
-cpgram,cov2cor,cov.wt,cor.test,cophenetic,%
-cooks.distance,contrasts<-,contr.treatment,contr.sum,contr.poly,%
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-TukeyHSD,StructTS,SSweibull,SSmicmen,SSlogis,%
-SSgompertz,SSfpl,SSfol,SSbiexp,SSasympOrig,%
-SSasympOff,SSasymp,SSD,PP.test,NLSstRtAsymptote,%
-NLSstLfAsymptote,NLSstClosestX,NLSstAsymptotic,KalmanSmooth,KalmanRun,%
-KalmanLike,KalmanForecast,HoltWinters,Box.test,BIC,%
-ARMAtoMA,ARMAacf,AIC%
-},%
-keywordstyle={[4]{\bf\color{RRecomdcolor}}},%
-%
-% --------------------------
-% Registration of package graphics [recommended or base]
-% --------------------------
-morekeywords={[5]xspline,text.default,stripchart,strheight,split.screen,%
-spineplot,smoothScatter,rasterImage,polypath,points.default,%
-plot.xy,plot.window,plot.new,plot.function,plot.design,%
-plot.default,pie,panel.smooth,pairs.default,lines.default,%
-layout.show,image.default,hist.default,grconvertY,grconvertX,%
-fourfoldplot,filled.contour,erase.screen,dotchart,contour.default,%
-co.intervals,close.screen,clip,cdplot,boxplot.matrix,%
-boxplot.default,barplot.default,axis.POSIXct,axis.Date,axTicks,%
-assocplot,Axis%
-},%
-keywordstyle={[5]{\bf\color{RRecomdcolor}}},%
-%
-% --------------------------
-% Registration of package grDevices [recommended or base]
-% --------------------------
-morekeywords={[6]xyz.coords,xyTable,xy.coords,xfig,trans3d,%
-topo.colors,tiff,terrain.colors,svg,setPS,%
-setGraphicsEventHandlers,setGraphicsEventEnv,setEPS,savePlot,rgb2hsv,%
-replayPlot,recordPlot,recordGraphics,quartzFonts,quartzFont,%
-quartz.save,quartz.options,quartz,ps.options,postscriptFonts,%
-postscriptFont,png,pdfFonts,pdf.options,pdf,%
-nclass.scott,nclass.Sturges,nclass.FD,n2mfrow,make.rgb,%
-jpeg,is.raster,heat.colors,hcl,grey.colors,%
-gray.colors,graphics.off,getGraphicsEventEnv,getGraphicsEvent,extendrange,%
-embedFonts,deviceIsInteractive,devAskNewPage,dev.size,dev.set,%
-dev.print,dev.prev,dev.off,dev.next,dev.new,%
-dev.list,dev.interactive,dev.hold,dev.flush,dev.cur,%
-dev.copy2pdf,dev.copy2eps,dev.copy,dev.control,dev.capture,%
-dev.capabilities,densCols,convertColor,contourLines,colorspaces,%
-colorRampPalette,colorRamp,colorConverter,col2rgb,cm.colors,%
-check.options,cairo_ps,cairo_pdf,boxplot.stats,bmp,%
-blues9,bitmap,axisTicks,as.raster,as.graphicsAnnot,%
-adjustcolor,X11Fonts,X11Font,X11.options,Type1Font,%
-Hershey,CIDFont%
-},%
-keywordstyle={[6]{\bf\color{RRecomdcolor}}},%
-%
-% --------------------------
-% Registration of package utils [recommended or base]
-% --------------------------
-morekeywords={[7]write.table,write.socket,write.csv2,write.csv,vignette,%
-url.show,upgrade,update.packages,update.packageStatus,unzip,%
-untar,unstack,type.convert,txtProgressBar,toLatex,%
-toBibtex,timestamp,tar,tail.matrix,tail,%
-summaryRprof,strOptions,str,stack,setTxtProgressBar,%
-setRepositories,setBreakpoint,sessionInfo,select.list,savehistory,%
-rtags,removeSource,remove.packages,relist,recover,%
-readCitationFile,read.table,read.socket,read.fwf,read.fortran,%
-read.delim2,read.delim,read.csv2,read.csv,read.DIF,%
-rc.status,rc.settings,rc.options,rc.getOption,promptPackage,%
-promptData,process.events,personList,person,packageVersion,%
-packageStatus,packageDescription,package.skeleton,old.packages,object.size,%
-nsl,news,new.packages,modifyList,mirror2html,%
-memory.size,memory.limit,makeRweaveLatexCodeRunner,make.socket,make.packages.html,%
-maintainer,lsf.str,ls.str,localeToCharset,loadhistory,%
-limitedLabels,is.relistable,installed.packages,install.packages,history,%
-help.start,help.search,help.request,head.matrix,head,%
-globalVariables,glob2rx,getTxtProgressBar,getSrcref,getSrcLocation,%
-getSrcFilename,getSrcDirectory,getS3method,getParseText,getParseData,%
-getFromNamespace,getCRANmirrors,getAnywhere,formatUL,formatOL,%
-flush.console,fixInNamespace,findLineNum,file_test,file.edit,%
-dump.frames,download.packages,download.file,de.setup,de.restore,%
-de.ncols,data.entry,create.post,count.fields,contrib.url,%
-compareVersion,combn,close.socket,citeNatbib,cite,%
-citation,citHeader,citFooter,citEntry,chooseCRANmirror,%
-chooseBioCmirror,checkCRAN,capture.output,bug.report,browseVignettes,%
-browseURL,browseEnv,bibentry,available.packages,assignInNamespace,%
-assignInMyNamespace,aspell_write_personal_dictionary_file,aspell_package_vignettes,aspell_package_Rd_files,aspell_package_R_files,%
-aspell_package_C_files,aspell,as.roman,as.relistable,as.personList,%
-as.person,argsAnywhere,aregexec,alarm,adist,%
-View,URLencode,URLdecode,SweaveSyntaxNoweb,SweaveSyntaxLatex,%
-SweaveSyntConv,SweaveHooks,Sweave,Stangle,RweaveTryStop,%
-RweaveLatexWritedoc,RweaveLatexSetup,RweaveLatexOptions,RweaveLatexFinish,RweaveLatex,%
-RweaveEvalWithOpt,RweaveChunkPrefix,RtangleWritedoc,RtangleSetup,Rtangle,%
-Rprofmem,Rprof,RSiteSearch,RShowDoc,CRAN.packages%
-},%
-keywordstyle={[7]{\bf\color{RRecomdcolor}}},%
-%
-% --------------------------
-% Registration of package datasets [recommended or base]
-% --------------------------
-morekeywords={[8]women,warpbreaks,volcano,uspop,trees,%
-treering,swiss,sunspots,sunspot.year,sunspot.month,%
-state.x77,state.region,state.name,state.division,state.center,%
-state.area,state.abb,stackloss,stack.x,stack.loss,%
-sleep,rock,rivers,randu,quakes,%
-pressure,presidents,precip,occupationalStatus,nottem,%
-nhtemp,mtcars,morley,mdeaths,lynx,%
-longley,lh,ldeaths,islands,iris3,%
-iris,infert,freeny.y,freeny.x,freeny,%
-fdeaths,faithful,eurodist,euro.cross,euro,%
-esoph,discoveries,crimtab,co2,chickwts,%
-cars,beaver2,beaver1,austres,attitude,%
-attenu,anscombe,airquality,airmiles,ability.cov,%
-WorldPhones,WWWusage,VADeaths,USPersonalExpenditure,USJudgeRatings,%
-USArrests,USAccDeaths,UKgas,UKDriverDeaths,UCBAdmissions,%
-ToothGrowth,Titanic,Theoph,Seatbelts,Puromycin,%
-PlantGrowth,OrchardSprays,Orange,Nile,Loblolly,%
-LifeCycleSavings,LakeHuron,JohnsonJohnson,InsectSprays,Indometh,%
-Harman74.cor,Harman23.cor,HairEyeColor,Formaldehyde,EuStockMarkets,%
-DNase,ChickWeight,CO2,BOD,BJsales.lead,%
-BJsales,AirPassengers%
-},%
-keywordstyle={[8]{\bf\color{RRecomdcolor}}},%
-%
-% --------------------------
-% Registration of package methods [recommended or base]
-% --------------------------
-morekeywords={[9]validSlotNames,validObject,unRematchDefinition,tryNew,traceOn,%
-traceOff,testVirtual,testInheritedMethods,superClassDepth,substituteFunctionArgs,%
-substituteDirect,slotsFromS3,slotNames,slot<-,slot,%
-signature,sigToEnv,showMlist,showMethods,showExtends,%
-showDefault,showClass,setValidity,setReplaceMethod,setRefClass,%
-setPrimitiveMethods,setPackageName,setOldClass,setMethod,setLoadActions,%
-setLoadAction,setIs,setGroupGeneric,setGenericImplicit,setGeneric,%
-setDataPart,setClassUnion,setClass,setAs,selectSuperClasses,%
-selectMethod,seemsS4Object,sealClass,resetGeneric,resetClass,%
-requireMethods,representation,removeMethodsObject,removeMethods,removeMethod,%
-removeGeneric,removeClass,rematchDefinition,registerImplicitGenerics,reconcilePropertiesAndPrototype,%
-rbind2,prototype,promptMethods,promptClass,prohibitGeneric,%
-possibleExtends,packageSlot<-,packageSlot,newEmptyObject,newClassRepresentation,%
-newBasic,multipleClasses,mlistMetaName,missingArg,methodsPackageMetaName,%
-methodSignatureMatrix,method.skeleton,metaNameUndo,mergeMethods,matchSignature,%
-makeStandardGeneric,makePrototypeFromClassDef,makeMethodsList,makeGeneric,makeExtends,%
-makeClassRepresentation,loadMethod,listFromMlist,listFromMethods,linearizeMlist,%
-languageEl<-,languageEl,isXS3Class,isVirtualClass,isSealedMethod,%
-isSealedClass,isGroup,isGrammarSymbol,isGeneric,isClassUnion,%
-isClassDef,isClass,insertSource,insertMethod,insertClassMethods,%
-initialize,initRefFields,initFieldArgs,inheritedSlotNames,implicitGeneric,%
-hasMethods,hasMethod,hasLoadAction,hasArg,getVirtual,%
-getValidity,getSubclasses,getSlots,getRefClass,getPrototype,%
-getProperties,getPackageName,getMethodsMetaData,getMethodsForDispatch,getMethods,%
-getMethod,getLoadActions,getGroupMembers,getGroup,getGenerics,%
-getGeneric,getFunction,getExtends,getDataPart,getClasses,%
-getClassPackage,getClassName,getClassDef,getClass,getAllSuperClasses,%
-getAllMethods,getAccess,generic.skeleton,functionBody<-,functionBody,%
-formalArgs,fixPre1.8,findUnique,findMethods,findMethodSignatures,%
-findMethod,findFunction,findClass,finalDefaultMethod,extends,%
-existsMethod,existsFunction,evalqOnLoad,evalSource,evalOnLoad,%
-emptyMethodsList,empty.dump,elNamed<-,elNamed,el<-,%
-el,dumpMethods,dumpMethod,doPrimitiveMethod,defaultPrototype,%
-defaultDumpName,conformMethod,completeSubclasses,completeExtends,completeClassDefinition,%
-coerce<-,coerce,classesToAM,className,classMetaName,%
-classLabel,checkSlotAssignment,cbind2,canCoerce,callNextMethod,%
-callGeneric,cacheMethod,cacheMetaData,cacheGenericsMetaData,body<-,%
-balanceMethodsList,assignMethodsMetaData,assignClassDef,asMethodDefinition,as<-,%
-allNames,allGenerics,addNextMethod,Summary,SignatureMethod,%
-S3Part<-,S3Part,S3Class<-,S3Class,Quote,%
-MethodsListSelect,MethodsList,MethodAddCoerce,Math2,Logic,%
-Complex,Compare,Arith%
-},%
-keywordstyle={[9]{\bf\color{RRecomdcolor}}},%
-%
-% --------------------------
-% Registration of package base [recommended or base]
-% --------------------------
-morekeywords={[10]xzfile,xtfrm.numeric_version,xtfrm.factor,xtfrm.difftime,xtfrm.default,%
-xtfrm.Surv,xtfrm.POSIXlt,xtfrm.POSIXct,xtfrm.Date,xtfrm.AsIs,%
-xtfrm,xpdrows.data.frame,xor.octmode,xor.hexmode,writeLines,%
-writeChar,writeBin,write.dcf,within.list,within.data.frame,%
-within,withVisible,withRestarts,withCallingHandlers,with.default,%
-with,which.min,which.max,weekdays.POSIXt,weekdays.Date,%
-weekdays,version,vapply,utf8ToInt,upper.tri,%
-unz,untracemem,unsplit,unserialize,unlockBinding,%
-unloadNamespace,unix.time,units<-.difftime,units<-,units.difftime,%
-units,unique.numeric_version,unique.matrix,unique.default,unique.data.frame,%
-unique.array,unique.POSIXlt,tryCatch,truncate.connection,truncate,%
-trunc.POSIXt,trunc.Date,transform.default,transform.data.frame,tracingState,%
-tracemem,toupper,topenv,tolower,toString.default,%
-toString,textConnectionValue,textConnection,testPlatformEquivalence,tempdir,%
-tcrossprod,taskCallbackManager,t.default,t.data.frame,system2,%
-system.time,system.file,sys.status,sys.source,sys.save.image,%
-sys.parents,sys.parent,sys.on.exit,sys.nframe,sys.load.image,%
-sys.function,sys.frames,sys.frame,sys.calls,sys.call,%
-suppressWarnings,suppressPackageStartupMessages,suppressMessages,summary.table,summary.srcref,%
-summary.srcfile,summary.matrix,summary.factor,summary.default,summary.data.frame,%
-summary.connection,summary.POSIXlt,summary.POSIXct,summary.Date,substring<-,%
-substr<-,subset.matrix,subset.default,subset.data.frame,strwrap,%
-strtrim,strtoi,strptime,strftime,storage.mode<-,%
-storage.mode,stopifnot,stdout,stdin,stderr,%
-standardGeneric,srcref,srcfilecopy,srcfilealias,srcfile,%
-sprintf,split<-.default,split<-.data.frame,split<-,split.default,%
-split.data.frame,split.POSIXct,split.Date,sort.list,sort.int,%
-sort.default,sort.POSIXlt,solve.qr,solve.default,socketSelect,%
-socketConnection,slice.index,sink.number,simplify2array,simpleWarning,%
-simpleMessage,simpleError,simpleCondition,signalCondition,showConnections,%
-shQuote,setTimeLimit,setSessionTimeLimit,setNamespaceInfo,setHook,%
-set.seed,serialize,seq_len,seq_along,seq.int,%
-seq.default,seq.POSIXt,seq.Date,seek.connection,seek,%
-scale.default,saveRDS,save.image,sample.int,sQuote,%
-rowsum.default,rowsum.data.frame,rownames<-,rowSums,rowMeans,%
-row.names<-.default,row.names<-.data.frame,row.names<-,row.names.default,row.names.data.frame,%
-row.names,round.POSIXt,round.Date,rev.default,retracemem,%
-restartFormals,restartDescription,requireNamespace,replicate,rep_len,%
-rep.numeric_version,rep.int,rep.factor,rep.POSIXlt,rep.POSIXct,%
-rep.Date,removeTaskCallback,regmatches<-,regmatches,registerS3methods,%
-registerS3method,regexec,reg.finalizer,readRenviron,readRDS,%
-readLines,readChar,readBin,read.dcf,rcond,%
-rbind.data.frame,rawToChar,rawToBits,rawShift,rawConnectionValue,%
-rawConnection,raw,rapply,range.default,quarters.POSIXt,%
-quarters.Date,quarters,qr.solve,qr.resid,qr.qy,%
-qr.qty,qr.fitted,qr.default,qr.coef,qr.X,%
-qr.R,qr.Q,pushBackLength,pushBack,psigamma,%
-provideDimnames,prop.table,proc.time,print.warnings,print.table,%
-print.summaryDefault,print.summary.table,print.srcref,print.srcfile,print.simple.list,%
-print.rle,print.restart,print.proc_time,print.packageInfo,print.octmode,%
-print.numeric_version,print.noquote,print.listof,print.libraryIQR,print.hexmode,%
-print.function,print.factor,print.difftime,print.default,print.data.frame,%
[TRUNCATED]
To get the complete diff run:
svnlook diff /svnroot/distr -r 883
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