[datatable-help] .SD segmentation fault.

[Arunkumar Srinivasan]

There’s no way to reproduce this. And there’s no version info (sessionInfo()). There’s little we can do with it.
I suggest you’ve a look at https://github.com/Rdatatable/data.table/wiki/Support and provide us with the necessary data/code for us to reproduce.

-- 
Arun

On 3 Sep 2015 at 19:58:41, George Gui (guizhida at gmail.com) wrote:

Hi, 

I had a memory bug when I tried to run the following script that wants to select a subset rows of data.table, the bug is somehow fixed by making a copy of the input data.table however:

library(data.table)

load('test_bug.RData')

Test.Bug <- function(tmp_move, ID){  
  print(ID)
  #tmp_move <- copy(tmp_move)
  coverage <- tmp_move[, .(c.count= sum(dummy== 0)), by= group]
  groups_selected <- unique(coverage[c.count>120, group])
  tmp_move2 <- tmp_move[group %in% groups_selected]
  return(tmp_move2)
}

move[, Test.Bug(.SD, ID), by= ID]


 *** caught segfault ***
address 0x7fc3910d2824, cause 'memory not mapped'

Traceback:
 1: bmerge(i, x, leftcols, rightcols, io <- FALSE, xo, roll = 0,     rollends = c(FALSE, FALSE), nomatch = 0L, verbose = verbose)
 2: `[.data.table`(tmp_move, group %in% groups_selected)
 3: tmp_move[group %in% groups_selected]
 4: Test.Bug(.SD, ID)
 5: `[.data.table`(move, , Test.Bug(.SD, ID), by = ID)
 6: move[, Test.Bug(.SD, ID), by = ID]


--
Zhida(George) Gui
Mathematics and Economics Major
Email:guizhida at gmail.com
Cell:773-614-2597
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