[CHNOSZ-commits] r446 - in pkg/CHNOSZ: . vignettes

[noreply at r-forge.r-project.org]

Author: jedick
Date: 2019-04-16 07:25:57 +0200 (Tue, 16 Apr 2019)
New Revision: 446

Modified:
   pkg/CHNOSZ/DESCRIPTION
   pkg/CHNOSZ/vignettes/CHNOSZ.png
   pkg/CHNOSZ/vignettes/anintro.Rmd
   pkg/CHNOSZ/vignettes/eos-regress.Rmd
   pkg/CHNOSZ/vignettes/obigt.Rmd
Log:
vignettes: use %\VignetteEncoding{UTF-8}


Modified: pkg/CHNOSZ/DESCRIPTION
===================================================================
--- pkg/CHNOSZ/DESCRIPTION	2019-04-16 04:25:40 UTC (rev 445)
+++ pkg/CHNOSZ/DESCRIPTION	2019-04-16 05:25:57 UTC (rev 446)
@@ -1,6 +1,6 @@
 Date: 2019-04-16
 Package: CHNOSZ
-Version: 1.3.1-26
+Version: 1.3.1-27
 Title: Thermodynamic Calculations and Diagrams for Geochemistry
 Authors at R: c(
     person("Jeffrey", "Dick", , "j3ffdick at gmail.com", role = c("aut", "cre"),

Modified: pkg/CHNOSZ/vignettes/CHNOSZ.png
===================================================================
(Binary files differ)

Modified: pkg/CHNOSZ/vignettes/anintro.Rmd
===================================================================
--- pkg/CHNOSZ/vignettes/anintro.Rmd	2019-04-16 04:25:40 UTC (rev 445)
+++ pkg/CHNOSZ/vignettes/anintro.Rmd	2019-04-16 05:25:57 UTC (rev 446)
@@ -17,7 +17,7 @@
 vignette: >
   %\VignetteIndexEntry{An Introduction to CHNOSZ}
   %\VignetteEngine{knitr::rmarkdown}
-  \usepackage[utf8]{inputenc}
+  %\VignetteEncoding{UTF-8}
 bibliography: vig.bib
 link-citations: yes
 csl: elementa.csl

Modified: pkg/CHNOSZ/vignettes/eos-regress.Rmd
===================================================================
--- pkg/CHNOSZ/vignettes/eos-regress.Rmd	2019-04-16 04:25:40 UTC (rev 445)
+++ pkg/CHNOSZ/vignettes/eos-regress.Rmd	2019-04-16 05:25:57 UTC (rev 446)
@@ -18,7 +18,7 @@
 vignette: >
   %\VignetteIndexEntry{Regressing thermodynamic data}
   %\VignetteEngine{knitr::rmarkdown}
-  \usepackage[utf8]{inputenc}
+  %\VignetteEncoding{UTF-8}
 bibliography: vig.bib
 link-citations: yes
 csl: elementa.csl

Modified: pkg/CHNOSZ/vignettes/obigt.Rmd
===================================================================
--- pkg/CHNOSZ/vignettes/obigt.Rmd	2019-04-16 04:25:40 UTC (rev 445)
+++ pkg/CHNOSZ/vignettes/obigt.Rmd	2019-04-16 05:25:57 UTC (rev 446)
@@ -9,7 +9,7 @@
 vignette: >
   %\VignetteIndexEntry{Thermodynamic data in CHNOSZ}
   %\VignetteEngine{knitr::rmarkdown}
-  \usepackage[utf8]{inputenc}
+  %\VignetteEncoding{UTF-8}
 bibliography: obigt.bib
 # so that these appear in the bibliography
 nocite: | 
@@ -234,7 +234,7 @@
 
 ### `r setfile("SLOP98.csv")`
 ```{r SLOP98, results="asis", echo=FALSE}
-cat('These species, which were taken from or are linked to slop98.dat (or later versions) and were present in earlier versions of CHNOSZ, have been replaced by or are incompatible with species currently in the default database, including aqueous Al species [@TS01], As species [@NA03], Au, Ag, and Cu species [@AZ01; @AZ10], Pd species [@TBZ+13], Zn species [@AT14], and Pt species [@TBB15]. This file also contains aqueous transuranic actinide complexes, for which estimated thermodynamic properties have been reported, but no entropies of the corresponding elements at 298.15 K are available to check the self-consistency of the GHS values for the complexes. The data are kept here to enable comparisons with newer data and reproduction of published calculations. Use <span style="color:red">`add.obigt("SLOP98")`</span> to load the data. **NOTE:** Many other species found in slop98.dat and later versions are still present in the default database.\n\n')
+cat('These species, which were taken from or are linked to slop98.dat (or later versions) and were present in earlier versions of CHNOSZ, have been replaced by or are incompatible with species currently in the default database, including aqueous Al species [@TS01], As species [@NA03], Au, Ag, and Cu species [@AZ01; @AZ10], Pd species [@TBZ+13], Zn species [@AT14], and Pt species [@TBB15]. This file also contains aqueous transuranic actinide complexes, for which estimated thermodynamic properties have been reported, but no entropies of the corresponding elements at 298.15 K are available to check the self-consistency of the GHS values for the complexes. Use <span style="color:red">`add.obigt("SLOP98")`</span> to load the data. **NOTE:** Many other species found in slop98.dat and later versions are still present in the default database.\n\n')
 ```
 
 ```{r optreflist, results="asis", echo=FALSE}
@@ -242,7 +242,7 @@
 
 ### `r setfile("OldAA.csv")`
 ```{r OldAA, results="asis", echo=FALSE}
-cat('Data for these amino acids and related species were present in earlier versions of CHNOSZ but have been replaced by or are incompatible with later updates [@LD12; @Kit14; @AKAE19]. The data are kept here to reproduce published calculations and for comparison with newer data. Use <span style="color:red">`add.obigt("OldAA")`</span> to load the data.\n\n')
+cat('Data for these amino acids and related species were present in earlier versions of CHNOSZ but have been replaced by or are incompatible with later updates [@LD12; @Kit14; @AKAE19]. Use <span style="color:red">`add.obigt("OldAA")`</span> to load the data.\n\n')
 ```
 
 ```{r optreflist, results="asis", echo=FALSE}