[CHNOSZ-commits] r83 - in pkg/CHNOSZ: . inst vignettes

[noreply at r-forge.r-project.org]

Author: jedick
Date: 2015-05-15 11:23:26 +0200 (Fri, 15 May 2015)
New Revision: 83

Modified:
   pkg/CHNOSZ/DESCRIPTION
   pkg/CHNOSZ/inst/NEWS
   pkg/CHNOSZ/vignettes/anintro.Rnw
   pkg/CHNOSZ/vignettes/anintro.lyx
Log:
use no internet in anintro.Rnw


Modified: pkg/CHNOSZ/DESCRIPTION
===================================================================
--- pkg/CHNOSZ/DESCRIPTION	2015-05-14 17:05:52 UTC (rev 82)
+++ pkg/CHNOSZ/DESCRIPTION	2015-05-15 09:23:26 UTC (rev 83)
@@ -1,6 +1,6 @@
-Date: 2015-05-14
+Date: 2015-05-15
 Package: CHNOSZ
-Version: 1.0.3-20
+Version: 1.0.3-21
 Title: Chemical Thermodynamics and Activity Diagrams
 Author: Jeffrey Dick
 Maintainer: Jeffrey Dick <j3ffdick at gmail.com>

Modified: pkg/CHNOSZ/inst/NEWS
===================================================================
--- pkg/CHNOSZ/inst/NEWS	2015-05-14 17:05:52 UTC (rev 82)
+++ pkg/CHNOSZ/inst/NEWS	2015-05-15 09:23:26 UTC (rev 83)
@@ -1,4 +1,4 @@
-CHANGES IN CHNOSZ 1.0.3-20 (2015-05-14)
+CHANGES IN CHNOSZ 1.0.3-21 (2015-05-15)
 ---------------------------------------
 
 NEW FEATURES:

Modified: pkg/CHNOSZ/vignettes/anintro.Rnw
===================================================================
--- pkg/CHNOSZ/vignettes/anintro.Rnw	2015-05-14 17:05:52 UTC (rev 82)
+++ pkg/CHNOSZ/vignettes/anintro.Rnw	2015-05-15 09:23:26 UTC (rev 83)
@@ -527,9 +527,11 @@
 
 If the protein is not available in CHNOSZ's own database, the amino
 acid composition of the protein can be retrieved from the UniProtKB
-(if the computer is connected to the Internet).
+(if the computer is connected to the internet). N.B. The following
+example is not evaluated when compiling this vignette in case the
+R package checks are run without internet access.
 
-<<subcrt_ALAT1>>=
+<<subcrt_ALAT1,eval=FALSE>>=
 aa <- uniprot.aa("ALAT1_HUMAN")
 add.protein(aa)
 subcrt("ALAT1_HUMAN",1,T=25)

Modified: pkg/CHNOSZ/vignettes/anintro.lyx
===================================================================
--- pkg/CHNOSZ/vignettes/anintro.lyx	2015-05-14 17:05:52 UTC (rev 82)
+++ pkg/CHNOSZ/vignettes/anintro.lyx	2015-05-15 09:23:26 UTC (rev 83)
@@ -2073,7 +2073,10 @@
 \begin_layout Standard
 If the protein is not available in CHNOSZ's own database, the amino acid
  composition of the protein can be retrieved from the UniProtKB (if the
- computer is connected to the Internet).
+ computer is connected to the internet).
+ N.B.
+ The following example is not evaluated when compiling this vignette in
+ case the R package checks are run without internet access.
 \end_layout
 
 \begin_layout Standard
@@ -2090,7 +2093,7 @@
 status open
 
 \begin_layout Plain Layout
-subcrt_ALAT1
+subcrt_ALAT1,eval=FALSE
 \end_layout
 
 \end_inset