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<div class="moz-cite-prefix">Dear Pablo,<br>
<br>
Don't worry about it.. It's just a warning indicating that some
function of raster package have changed of names.. <br>
I took this into account in the last biomod2 version so warnings
will disappear when you'll update the package .<br>
<br>
Best,<br>
<br>
Damien <br>
<br>
On 12/09/2012 14:46, Pablo Riul wrote:<br>
</div>
<blockquote
cite="mid:1347453980.20646.YahooMailNeo@web39305.mail.mud.yahoo.com"
type="cite">
<div style="color:#000; background-color:#fff; font-family:times
new roman, new york, times, serif;font-size:18pt">
<div><span>Dear list,</span></div>
<div style="color: rgb(0, 0, 0); font-size: 24px; font-family:
'times new roman', 'new york', times, serif; background-color:
transparent; font-style: normal; "><span><br>
</span></div>
<div style="color: rgb(0, 0, 0); font-size: 24px; font-family:
'times new roman', 'new york', times, serif; background-color:
transparent; font-style: normal; "><span>I updated my packages
and I'm now using raster 2.0-12. When I created myBiomodData
using the BIOMOD_FormatingData function I received the
warning below:</span></div>
<div style="color: rgb(0, 0, 0); font-size: 24px; font-family:
'times new roman', 'new york', times, serif; background-color:
transparent; font-style: normal; "><span><br>
</span></div>
<div style="color: rgb(0, 0, 0); font-size: 24px; font-family:
'times new roman', 'new york', times, serif; background-color:
transparent; font-style: normal; "><span>
<div style="margin: 0.0px 0.0px 0.0px 0.0px; font: 14.2px
Monaco; color: #1c39f6"><span style="color: #99228d">>
</span>myBiomodData <- BIOMOD_FormatingData(resp.var =
myResp,expl.var = myExpl,resp.xy = myRespXY,resp.name =
myRespName,PA.nb.rep = 1,PA.nb.absences = 1000,PA.strategy
= 'random')</div>
<div style="margin: 0.0px 0.0px 0.0px 0.0px; font: 14.2px
Monaco; min-height: 19.0px"><br>
</div>
<div style="margin: 0.0px 0.0px 0.0px 0.0px; font: 14.2px
Monaco">-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=
Mhisp Data Formating
-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=</div>
<div style="margin: 0.0px 0.0px 0.0px 0.0px; font: 14.2px
Monaco; min-height: 19.0px"><br>
</div>
<div style="margin: 0.0px 0.0px 0.0px 0.0px; font: 14.2px
Monaco"> ! No data has been set aside for modeling
evaluation</div>
<div style="margin: 0.0px 0.0px 0.0px 0.0px; font: 14.2px
Monaco"> > Pseudo Absences Selection checkings...</div>
<div style="margin: 0.0px 0.0px 0.0px 0.0px; font: 14.2px
Monaco"> > random pseudo absences selection</div>
<div style="margin: 0.0px 0.0px 0.0px 0.0px; font: 14.2px
Monaco"> > Pseudo absences are selected in
explanatory variables</div>
<div style="margin: 0.0px 0.0px 0.0px 0.0px; font: 14.2px
Monaco">-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=
Done
-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=</div>
<div style="margin: 0.0px 0.0px 0.0px 0.0px; font: 14.2px
Monaco; color: #ff1f17">Warning message:</div>
<div style="margin: 0.0px 0.0px 0.0px 0.0px; font: 14.2px
Monaco; color: #ff1f17">In .local(x, rcl, ...) :</div>
<div style="margin: 0.0px 0.0px 0.0px 0.0px; font: 14.2px
Monaco; color: #ff1f17"> raster function "reclass" has
been deprecated and will be removed from the package;</div>
<div style="margin: 0.0px 0.0px 0.0px 0.0px; font: 14.2px
Monaco; color: #ff1f17">Please use "reclassify" instead</div>
<div style="margin: 0.0px 0.0px 0.0px 0.0px; font: 14.2px
Monaco; color: #ff1f17"><br>
</div>
<div style="margin: 0.0px 0.0px 0.0px 0.0px; font: 14.2px
Monaco; color: #ff1f17"><br>
</div>
</span></div>
<div>Its not a problem now, but maybe in next updates of package
raster the reclass function may be not available anymore.</div>
<div><br>
</div>
<div style="color: rgb(0, 0, 0); font-size: 24px; font-family:
'times new roman', 'new york', times, serif; background-color:
transparent; font-style: normal; ">Cheers,</div>
<div style="color: rgb(0, 0, 0); font-size: 24px; font-family:
'times new roman', 'new york', times, serif; background-color:
transparent; font-style: normal; "> </div>
<div>Pablo Riul<br>
<br>
Departamento de Engenharia e Meio Ambiente<br>
Centro de Ciências Aplicadas e Educação<br>
Universidade Federal da Paraíba - Campus IV<br>
R: Mangueira s/n, Centro CEP: 58.297-000<br>
Rio Tinto - Paraíba - Brasil</div>
</div>
<br>
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<br>
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</blockquote>
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